BAC Information

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BAC

Clone NameB6Ng01-189B03
Chromosome9 (Build37)
Map Location 99,273,555 - 99,410,447
singlet/doubletdoublet
Overlap geneMras, LOC623534, Armc8
Upstream geneNmnat3, Rbp1, Rbp2, 4930579K19Rik, Copb2, Mrps22, EG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e
Downstream geneDbr1, A4gnt, Dzip1l, Cldn18, EG667429, Sox14, LOC667456, 4930519F24Rik, LOC100040590, Il20rb, Nck1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189B03.bB6Ng01-189B03.g
ACCGA013192GA013193
length855568
definitionB6Ng01-189B03.b B6Ng01-189B03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,273,555 - 99,274,407)(99,409,874 - 99,410,447)
sequence
gaattcataaagagaatcttaaggagacctctaggaacttccttatcatt
gaggacaaagcaagcctatcaggaaaccaagaaggctttcatagcaggac
taatacaagcagaaggtaacttgacattctcttctgttaactagaaacag
gacaaatacatgaccttcttgttgatgccatcgtgatgtaaaggattcag
tcacacccttctggaggcgggagttgtttggaagttgatcttgattttat
gaccatcatctgtgtaagctctccagggctgaccacccatcatgccgact
tctgtgtctctggagatttcatattctctcagctttgttctctcatgtca
acatgtggcgtagctccgctgcatggctgtaaccgtctccaacaccactg
aagacatggaagcctcagctcatctctactctctctctctctcttttatc
tatctatcggaatgtcaaggatctctggtctgtctatcttttatctagat
atcatagtaaaaaaaattctgagcagcccacagtgctgttatcagcatct
gcttcctagatcatatcctgcagttcagctgagaggctgaaggcagcgac
tgttaacttcccccatagttgtcaagcccagaaatgcaaagtccggtgtt
gagaggacaattttttcttttcttttcttctttaaacaatttgatgttat
catttacttgcatgtacatatgaatactcatgtgagtatgtgtctcgttt
gtatatgccccaaggagactagcagaggacacaggaaaccctggaactgg
ggagttacagagttgtaagccagatgatgtaaatgcttcaaacaatatca
ggtcc
tacatgctatgacttggtccctttcaaagcttgggagcatggtattgggt
tctttaagggatacaatagagaacatggcttattgcttttgcctgtccaa
ccccagatctataaaacaatgcggcactccatgagactgtcatgagtcaa
gtcaccgctaactccttcactgttgacctggaaagtggtgcctggatttc
taaccctttccctaaaaccttggaatcacatttttatcctcattttgatc
atggttctcaccgaaatgtcccctttacccctgcatacatgacttcaggt
tagatcatgttgttcacatgacctttctggatgctcttttggtctggaat
tatatgttcatattctgattttgtatcatttttaccctcttatggactgg
taatcctgatgaagaaaatgaatcaaattctcaactttgagcttcctaga
acgctgccaaggatctgctttataacatcttcatgtacaagtctacacct
atagatgtcctagaaaggtcagtttgtgcctagagagaaggtatttaaga
tatagccttactgtaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_99273555_99274407
seq2: B6Ng01-189B03.b_46_900

seq1  GAATTCATAAAGAGAATCTTAAGGAGACCTCTAGGAACTTCCTTATCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAAGAGAATCTTAAGGAGACCTCTAGGAACTTCCTTATCATT  50

seq1  GAGGACAAAGCAAGCCTATCAGGAAACCAAGAAGGCTTTCATAGCAGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAAAGCAAGCCTATCAGGAAACCAAGAAGGCTTTCATAGCAGGAC  100

seq1  TAATACAAGCAGAAGGTAACTTGACATTCTCTTCTGTTAACTAGAAACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACAAGCAGAAGGTAACTTGACATTCTCTTCTGTTAACTAGAAACAG  150

seq1  GACAAATACATGACCTTCTTGTTGATGCCATCGTGATGTAAAGGATTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATACATGACCTTCTTGTTGATGCCATCGTGATGTAAAGGATTCAG  200

seq1  TCACACCCTTCTGGAGGCGGGAGTTGTTTGGAAGTTGATCTTGATTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCCTTCTGGAGGCGGGAGTTGTTTGGAAGTTGATCTTGATTTTAT  250

seq1  GACCATCATCTGTGTAAGCTCTCCAGGGCTGACCACCCATCATGCCGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATCATCTGTGTAAGCTCTCCAGGGCTGACCACCCATCATGCCGACT  300

seq1  TCTGTGTCTCTGGAGATTTCATATTCTCTCAGCTTTGTTCTCTCATGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTCTCTGGAGATTTCATATTCTCTCAGCTTTGTTCTCTCATGTCA  350

seq1  ACATGTGGCGTAGCTCCGCTGCATGGCTGTAACCGTCTCCAACACCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGGCGTAGCTCCGCTGCATGGCTGTAACCGTCTCCAACACCACTG  400

seq1  AAGACATGGAAGCCTCAGCTCATCTCTACTCTCTCTCTCTCTCTTTTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATGGAAGCCTCAGCTCATCTCTACTCTCTCTCTCTCTCTTTTATC  450

seq1  TATCTATCGGAATGTCAAGGATCTCTGGTCTGTCTATCTTTTATCTAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCGGAATGTCAAGGATCTCTGGTCTGTCTATCTTTTATCTAGAT  500

seq1  ATCATAGTAAAAAAAATTCTGAGCAGCCCACAGTGCTGTTATCAGCATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGTAAAAAAAATTCTGAGCAGCCCACAGTGCTGTTATCAGCATCT  550

seq1  GCTTCCTAGATCATATCCTGCAGTTCAGCTGAGAGGCTGAAGGCAGCGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTAGATCATATCCTGCAGTTCAGCTGAGAGGCTGAAGGCAGCGAC  600

seq1  TGTTAACTTCCCCCATAGTTGTCAAGCCCAGAAATGCAAAGTCCGGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACTTCCCCCATAGTTGTCAAGCCCAGAAATGCAAAGTCCGGTGTT  650

seq1  GAGAGGACAATTTTTTCTTTTCTTTTCTTCTTTAAACAATTTGATGTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGACAATTTTTTCTTTTCTTTTCTTCTTTAAACAATTTGATGTTAT  700

seq1  CA-TTACTTGCATGTACATATGAATACTCATGTGAGTATGTGTCGCGTTT  749
      || ||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CATTTACTTGCATGTACATATGAATACTCATGTGAGTATGTGTCTCGTTT  750

seq1  GTATATG-CCCAAGGAGACTAGCAGAGGACACAGG-AACCCTGGAACTGG  797
      ||||||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  GTATATGCCCCAAGGAGACTAGCAGAGGACACAGGAAACCCTGGAACTGG  800

seq1  GGAGTTACAGAGTTGTAAGCCAGATGATGTGAATGCTTCAAACCAAAATC  847
      |||||||||||||||||||||||||||||| ||||||||||| ||| |||
seq2  GGAGTTACAGAGTTGTAAGCCAGATGATGTAAATGCTTCAAA-CAATATC  849

seq1  AGGTCC  853
      ||||||
seq2  AGGTCC  855

seq1: chr9_99409874_99410447
seq2: B6Ng01-189B03.g_69_642 (reverse)

seq1  TTTTACAGTAAGGCTATATCTTAGATACCTTCTCTCTAGGCACAAACTGA  50
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTTACAGTAAGGCTATATCTTAAATACCTTCTCTCTAGGCACAAACTGA  50

seq1  CCTTTCTAGGACATCTATAGGTGTAGACTTGTACATGAAGATGTTATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTAGGACATCTATAGGTGTAGACTTGTACATGAAGATGTTATAAA  100

seq1  GCAGATCCTTGGCAGCGTTCTAGGAAGCTCAAAGTTGAGAATTTGATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCCTTGGCAGCGTTCTAGGAAGCTCAAAGTTGAGAATTTGATTCA  150

seq1  TTTTCTTCATCAGGATTACCAGTCCATAAGAGGGTAAAAATGATACAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCATCAGGATTACCAGTCCATAAGAGGGTAAAAATGATACAAAA  200

seq1  TCAGAATATGAACATATAATTCCAGACCAAAAGAGCATCCAGAAAGGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATATGAACATATAATTCCAGACCAAAAGAGCATCCAGAAAGGTCA  250

seq1  TGTGAACAACATGATCTAACCTGAAGTCATGTATGCAGGGGTAAAGGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACAACATGATCTAACCTGAAGTCATGTATGCAGGGGTAAAGGGGA  300

seq1  CATTTCGGTGAGAACCATGATCAAAATGAGGATAAAAATGTGATTCCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCGGTGAGAACCATGATCAAAATGAGGATAAAAATGTGATTCCAAG  350

seq1  GTTTTAGGGAAAGGGTTAGAAATCCAGGCACCACTTTCCAGGTCAACAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGGGAAAGGGTTAGAAATCCAGGCACCACTTTCCAGGTCAACAGT  400

seq1  GAAGGAGTTAGCGGTGACTTGACTCATGACAGTCTCATGGAGTGCCGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGTTAGCGGTGACTTGACTCATGACAGTCTCATGGAGTGCCGCAT  450

seq1  TGTTTTATAGATCTGGGGTTGGACAGGCAAAAGCAATAAGCCATGTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATAGATCTGGGGTTGGACAGGCAAAAGCAATAAGCCATGTTCTC  500

seq1  TATTGTATCCCTTAAAGAACCCAATACCATGCTCCCAAGCTTTGAAAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTATCCCTTAAAGAACCCAATACCATGCTCCCAAGCTTTGAAAGGG  550

seq1  ACCAAGTCATAGCATGTAGAATTC  574
      ||||||||||||||||||||||||
seq2  ACCAAGTCATAGCATGTAGAATTC  574