BAC Information

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BAC

Clone NameB6Ng01-189F12
Chromosome9 (Build37)
Map Location 92,450,101 - 92,599,168
singlet/doubletdoublet
Overlap genePlod2, LOC100039921, LOC100039931
Upstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4
Downstream geneLOC100039944, LOC667009, LOC100040114, LOC674371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189F12.bB6Ng01-189F12.g
ACCGA013394GA013395
length1,174249
definitionB6Ng01-189F12.b B6Ng01-189F12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,597,994 - 92,599,168)(92,450,101 - 92,450,349)
sequence
gaattcaaatagccaaggccagaagaagaagtatggaatctattggagat
ttgcatgcaagaaatgcaaatagtgcctgaagagccctttcaaattactc
tatatacatttcccaactaaagtaaaaaccaaaattattctacaatcaga
aagtaagatagagttttattacctgcctgaaaacacccagaaaatacaaa
taaacagaatttaaaatatgcttaaaggagttaataaaagaaagggaacc
aagagagaaaagattagctaaagtggcagagccagactggggcctcgttc
ttccagaatcgccttgagttctagcattgtcgcctgaacaacagaagaaa
agtcctccaagtctcagaacagggtttgtagactagggttacagtgtcac
aagtctgtccccaggagggaggatggatggtagtaagtagacaaccacag
aacgacaacagaacaccattttaaatataatttaatttttgttttattgg
tgtgcacgtctgcctggtgtcttcagaggtcagaaataggcattggatcc
cctgacactggacttatagacaattgtgagccaccatgcgagtgatagaa
accaaatgcaggttatctgcaagtagaacaagtgctcttaacctctgccg
atacatacttttaaatgagacccctgaatgagttccccaatgagagctgt
gatgttggagtcttggccacggggaagaggaaaaaaaatcaaataaatga
gctccattctctgctctggcacccagtcctgcgcatgtggccctgtcacc
tttccttagaggcttccttccacagctttggcctctgtgggtgccatgat
gattcctgatgctttatgttgcaactagtacatttttgactctatttatt
ttaaatttaggtttcgaaaatatggactttaaaccctgactttaatttct
tacctggtcagtactttttaggcacacacaatattttaaatattttcatc
attgaattccattattcttacaggacctagtggtgtatctatctattttt
ttttattatttttcctatttctacatatggaatagtacatggtactagtt
agggtaataactagataccatgtttatcaataaaatatttataaggcatt
atactggtgagctcagtaatacag

atctctgctgctggttctcagaaattccttcactaggaggtttgtgtgat
cagatccattaatctctgtttctaaactccctcacagctgtctccatctg
acaccaggttgcagagtcaaatctcttctgtttataggatttcagaaagg
tcagagagtgttgggttttcagggtcagggaatttaacctgaaatctctc
tttatttatttttcttttggtggggagagagaaagaaggggggggggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_92597994_92599168
seq2: B6Ng01-189F12.b_46_1219 (reverse)

seq1  CTGTATTTACTGAGCTCACAATTTATAATGCCTATTAAATATTTTATTTG  50
      ||||| ||||||||||||| |  ||||||||||  ||||||||||| |||
seq2  CTGTA-TTACTGAGCTCACCA-GTATAATGCCTTATAAATATTTTA-TTG  47

seq1  AT-AACATGGTTATCTAGTGTATACCTTAAACTAGTTCCATGTACTTATT  99
      || ||||||| ||||||||   |||| | ||||||| |||||||| ||||
seq2  ATAAACATGG-TATCTAGTTATTACCCT-AACTAGTACCATGTAC-TATT  94

seq1  CATAATATTTAGAAATTAGAAAAAATAAT--AAAAAAATAGATAGATACA  147
      |   |||| |||||| ||| |||||||||  |||||||||||||||||||
seq2  C--CATATGTAGAAA-TAGGAAAAATAATAAAAAAAAATAGATAGATACA  141

seq1  -CACTAGGT-CTGTA--GATAATGGAATTCATTGATGAAAATATTTAAAA  193
       |||||||| |||||   ||||||||||||| ||||||||||||||||||
seq2  CCACTAGGTCCTGTAAGAATAATGGAATTCAATGATGAAAATATTTAAAA  191

seq1  TATTTGTGTGTGCCTAAAAAGTACTGACCAGGTAAGAAATTTAAGTCAGG  243
      || |||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TA-TTGTGTGTGCCTAAAAAGTACTGACCAGGTAAGAAATTAAAGTCAGG  240

seq1  GTTTTAAAGTCCATATTTTCGAAACCTAAATTT-AAATAAATAGAGTCAA  292
      | ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  G-TTTAAAGTCCATATTTTCGAAACCTAAATTTAAAATAAATAGAGTCAA  289

seq1  AAATGTACTAGTTGCAACATAAAGCATCAGGAATCATCATGGCACCCACA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTACTAGTTGCAACATAAAGCATCAGGAATCATCATGGCACCCACA  339

seq1  GAGGCCAAAGCTGTGGAAGGAAGCCTCTAAGG-AAGGTGACAGGGCCACA  391
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAGGCCAAAGCTGTGGAAGGAAGCCTCTAAGGAAAGGTGACAGGGCCACA  389

seq1  TGCGCAGGACTGGGTGCCAGAGCAGAGAATGGAGCTCATTTATTTGATTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCAGGACTGGGTGCCAGAGCAGAGAATGGAGCTCATTTATTTGATTT  439

seq1  TTTTTCCTCTTCCCCGTGGCCAAGACTCCAACATCACAGCTCTCATTGGG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTCTTCCCCGTGGCCAAGACTCCAACATCACAGCTCTCATTGGG  489

seq1  GAACTCATTCAGGGGTCTCATTT-AAAGTATGTATCGGCAGAGGTTAAGA  540
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAACTCATTCAGGGGTCTCATTTAAAAGTATGTATCGGCAGAGGTTAAGA  539

seq1  GCACTTGTTCTACTTGCAGATAACCTGCATTTGGTTTCTATCACTCGCAT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGTTCTACTTGCAGATAACCTGCATTTGGTTTCTATCACTCGCAT  589

seq1  GGTGGCTCACAATTGTCTATAAGTCCAGTGTCAGGGGATCCAATGCCTAT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTCACAATTGTCTATAAGTCCAGTGTCAGGGGATCCAATGCCTAT  639

seq1  TTCTGACCTCTGAAGACACCAGGCAGACGTGCACACCAATAAAACAAAAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACCTCTGAAGACACCAGGCAGACGTGCACACCAATAAAACAAAAA  689

seq1  TTAAATTATATTTAAAATGGTGTTCTGTTGTCGTTCTGTGGTTGTCTACT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTATATTTAAAATGGTGTTCTGTTGTCGTTCTGTGGTTGTCTACT  739

seq1  TACTACCATCCATCCTCCCTCCTGGGGACAGACTTGTGACACTGTAACCC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACCATCCATCCTCCCTCCTGGGGACAGACTTGTGACACTGTAACCC  789

seq1  TAGTCTACAAACCCTGTTCTGAGACTTGGAGGACTTTTCTTCTGTTGTTC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTACAAACCCTGTTCTGAGACTTGGAGGACTTTTCTTCTGTTGTTC  839

seq1  AGGCGACAATGCTAGAACTCAAGGCGATTCTGGAAGAACGAGGCCCCAGT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGACAATGCTAGAACTCAAGGCGATTCTGGAAGAACGAGGCCCCAGT  889

seq1  CTGGCTCTGCCACTTTAGCTAATCTTTTCTCTCTTGGTTCCCTTTCTTTT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCTGCCACTTTAGCTAATCTTTTCTCTCTTGGTTCCCTTTCTTTT  939

seq1  ATTAACTCCTTTAAGCATATTTTAAATTCTGTTTATTTGTATTTTCTGGG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTCCTTTAAGCATATTTTAAATTCTGTTTATTTGTATTTTCTGGG  989

seq1  TGTTTTCAGGCAGGTAATAAAACTCTATCTTACTTTCTGATTGTAGAATA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAGGCAGGTAATAAAACTCTATCTTACTTTCTGATTGTAGAATA  1039

seq1  ATTTTGGTTTTTACTTTAGTTGGGAAATGTATATAGAGTAATTTGAAAGG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGTTTTTACTTTAGTTGGGAAATGTATATAGAGTAATTTGAAAGG  1089

seq1  GCTCTTCAGGCACTATTTGCATTTCTTGCATGCAAATCTCCAATAGATTC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCAGGCACTATTTGCATTTCTTGCATGCAAATCTCCAATAGATTC  1139

seq1  CATACTTCTTCTTCTGGCCTTGGCTATTTGAATTC  1175
      |||||||||||||||||||||||||||||||||||
seq2  CATACTTCTTCTTCTGGCCTTGGCTATTTGAATTC  1174


seq1: chr9_92450101_92450349
seq2: B6Ng01-189F12.g_73_321

seq1  ATCTCTGCTGCTGGTTCTCAGAAATTCCTTCACTAGGAGGTTTGTGTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGCTGCTGGTTCTCAGAAATTCCTTCACTAGGAGGTTTGTGTGAT  50

seq1  CAGATCCATTAATCTCTGTTTCTAAACTCCCTCACAGCTGTCTCCATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCATTAATCTCTGTTTCTAAACTCCCTCACAGCTGTCTCCATCTG  100

seq1  ACACCAGGTTGCAGAGTCAAATCTCTTCTGTTTATAGGATTTCAGAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGGTTGCAGAGTCAAATCTCTTCTGTTTATAGGATTTCAGAAAGG  150

seq1  TCAGAGAGTGTTGGGTTTTCAGGGTCAGGGAATTTAACCTGAAATCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAGTGTTGGGTTTTCAGGGTCAGGGAATTTAACCTGAAATCTCTC  200

seq1  TTTATTTATTTTTCTTTTGGTGGGGAGAGAGAAAGAAGGGGGGGGGGTC  249
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTTTCTTTTGGTGGGGAGAGAGAAAGAAGGGGGGGGGGTC  249


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