BAC Information

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BAC

Clone NameB6Ng01-189G19
Chromosome2 (Build37)9 (Build37)
Map Location 4,751,861 - 4,752,01729,995,399 - 29,996,514
singlet/doubletsingletsinglet
Overlap geneLOC666973
Upstream geneLOC100040257, LOC100040163, LOC666944, 1700080N15Rik, Frmd4a, EG634452, Prpf18, LOC623483, E130319B15Rik
Downstream geneSephs1, Phyh, LOC381346, LOC100040250, LOC100040426, 1110017I16Rik, Mcm10, Optn, Ccdc3, LOC100040292, Camk1d, LOC666599, Cdc123
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189G19.bB6Ng01-189G19.g
ACCGA013449GA013450
length3051,121
definitionB6Ng01-189G19.b B6Ng01-189G19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,751,861 - 4,752,017)(29,995,399 - 29,996,514)
sequence
taaaaacaccatgtcaacttgactcttttttaatatgaacagacctttcc
tgatgaaacttggtgatgttaacaggcacctttctttgaattatgtacat
tgtgtacctgtgtgtgggcaggcacacatgctttgggtgtcactgggggc
cagaggcacaaatctgctggagttacaggtggatgtgagatgcctcatat
ggatgttagaaccaaactcagggtctctgcaagagcaagcactcttaacc
agtggaagccatttctcaagccccacaaggatgtatgtgtgtgtgtgtgt
gtgtg
gaattctcattaggagaaaggaggaaggagagctgtgagcacttcagaca
aagacaaaattttcctcagtgagttgggactaggtgggatagagaataga
aggactagggcacagacatcatatgctgacatgctggagaagaagatgtc
attgtttctttcctgtgatgagaaacctaaaatctaggtaagtagtctga
aggcacagacctaacaagaaatagcatttagagataaaatttgtatgaaa
acaaaggtctccacttccccatataaacacagtttgccccagaggagata
aatatctatctgagtaccctaacaataaaatcaataaggttattgagccc
tgtctcaccatccttcagtggcaacggtggaaaacacaaccagagaacac
tgtaactcattcccagacagctgggatccacagatatcttttcaggccct
attctttagtaaatggctcagcccttttgatgaaatagagttagggattg
gatttccttagtaaacacaaactcattcattcgaagacaaagtattagtc
aagtccccaccatgttagaagccaccaggaggttggcagacaactagaaa
taggatacattatttgccatgacaggtaagcctcaaagctgaaaatggaa
ttttaagcaattaagactctgtaaggctgtaggagaattaatacaggagt
cactcaacagggcttgagatgaccaggaaagactttgtgaatttcatagc
atttgttcatgctgttctggatgcgtatttactctccttttaatgatttt
attttaatctttgaggttatcttgaactctcctcaattttcaaactttac
aattgaattctacataatccctaaagttaccgttaaattgaataggtccc
aaagtcacacccttccattgaaaagtaacattgtaaacatccttattttc
ttatggcccctagacattcagattccatttattaataatacatttttaaa
aaacattattgtatagattcataaggcagttttttttaaaagctcattaa
gccttgaacattctggaacagtagatacgtttgtgaattgtatagagaat
gtctgcccaagcgtggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_4751861_4752017
seq2: B6Ng01-189G19.b_260_357 (reverse)

seq1  CACACACATACACACACACACATACACACACACACATACACACACACACA  50
                                                ||||||||
seq2  ------------------------------------------CACACACA  8

seq1  CACACACACACACACAGGAAATGTGCAGAGAAGTGAGACTTGAGGACTGC  100
      |||||||||||| |||       | |      ||| | |||||| | || 
seq2  CACACACACACATACA-------TCC----TTGTGGGGCTTGAGAAATG-  46

seq1  AGAGAGAGCTTTGCCA----TAAAGAGTGCTTGCTGCTCCTGCAGAGGCC  146
             ||||  |||    | |||||||||   ||||| ||||||| ||
seq2  -------GCTT--CCACTGGTTAAGAGTGCT---TGCTCTTGCAGAGACC  84

seq1  ---AGTTTGGTTCT  157
         |||||||||||
seq2  CTGAGTTTGGTTCT  98

seq1: chr9_29995399_29996514
seq2: B6Ng01-189G19.g_65_1185

seq1  GAATTCTCATTAGGAGAAAGGAGGAAGGAGAGCTGTGAGCACTTCAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTAGGAGAAAGGAGGAAGGAGAGCTGTGAGCACTTCAGACA  50

seq1  AAGACAAAATTTTCCTCAGTGAGTTGGGACTAGGTGGGATAGAGAATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAAATTTTCCTCAGTGAGTTGGGACTAGGTGGGATAGAGAATAGA  100

seq1  AGGACTAGGGCACAGACATCATATGCTGACATGCTGGAGAAGAAGATGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTAGGGCACAGACATCATATGCTGACATGCTGGAGAAGAAGATGTC  150

seq1  ATTGTTTCTTTCCTGTGATGAGAAACCTAAAATCTAGGTAAGTAGTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTCTTTCCTGTGATGAGAAACCTAAAATCTAGGTAAGTAGTCTGA  200

seq1  AGGCACAGACCTAACAAGAAATAGCATTTAGAGATAAAATTTGTATGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAGACCTAACAAGAAATAGCATTTAGAGATAAAATTTGTATGAAA  250

seq1  ACAAAGGTCTCCACTTCCCCATATAAACACAGTTTGCCCCAGAGGAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGTCTCCACTTCCCCATATAAACACAGTTTGCCCCAGAGGAGATA  300

seq1  AATATCTATCTGAGTACCCTAACAATAAAATCAATAAGGTTATTGAGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTATCTGAGTACCCTAACAATAAAATCAATAAGGTTATTGAGCCC  350

seq1  TGTCTCACCATCCTTCAGTGGCAACGGTGGAAAACACAACCAGAGAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCACCATCCTTCAGTGGCAACGGTGGAAAACACAACCAGAGAACAC  400

seq1  TGTAACTCATTCCCAGACAGCTGGGATCCACAGATATCTTTTCAGGCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTCATTCCCAGACAGCTGGGATCCACAGATATCTTTTCAGGCCCT  450

seq1  ATTCTTTAGTAAATGGCTCAGCCCTTTTGATGAAATAGAGTTAGGGATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTAGTAAATGGCTCAGCCCTTTTGATGAAATAGAGTTAGGGATTG  500

seq1  GATTTCCTTAGTAAACACAAACTCATTCATTCGAAGACAAAGTATTAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCTTAGTAAACACAAACTCATTCATTCGAAGACAAAGTATTAGTC  550

seq1  AAGTCCCCACCATGTTAGAAGCCACCAGGAGGTTGGCAGACAACTAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCCACCATGTTAGAAGCCACCAGGAGGTTGGCAGACAACTAGAAA  600

seq1  TAGGATACATTATTTGCCATGACAGGTAAGCCTCAAAGCTGAAAATGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATACATTATTTGCCATGACAGGTAAGCCTCAAAGCTGAAAATGGAA  650

seq1  TTTTAAGCAATTAAGACTCTGTAAGGCTGTAGGAGAATTAATACAGGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGCAATTAAGACTCTGTAAGGCTGTAGGAGAATTAATACAGGAGT  700

seq1  CACTCAACAGGGCTTGAGATGACCAGGAAAGACTTTGTGAATTTCATAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAACAGGGCTTGAGATGACCAGGAAAGACTTTGTGAATTTCATAGC  750

seq1  ATTTGTTCATGCTGTTCTGGATGCGTATTTACTCTCCTTTTAATGATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTCATGCTGTTCTGGATGCGTATTTACTCTCCTTTTAATGATTTT  800

seq1  ATTTTAATCTTTGAGGTTATCTTGAACTCTCCTCAATTTTCAAACTTTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATCTTTGAGGTTATCTTGAACTCTCCTCAATTTTCAAACTTTAC  850

seq1  AATTGAATTCTACATAATCCCTAAAGTTACCGTTAAATTGAATAGGTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAATTCTACATAATCCCTAAAGTTACCGTTAAATTGAATAGGTCCC  900

seq1  AAAGTCACACCCTTCCA-TGAAAAGTAACA-TGTAAACATCC-TATTT--  945
      ||||||||||||||||| |||||||||||| ||||||||||| |||||  
seq2  AAAGTCACACCCTTCCATTGAAAAGTAACATTGTAAACATCCTTATTTTC  950

seq1  CTATGGCCCCTAGACAATCAGATTCCATTATTAAATAATACA-TTTTAAA  994
       ||||||||||||||| ||||||||||||  | ||||||||| |||||||
seq2  TTATGGCCCCTAGACATTCAGATTCCATTTATTAATAATACATTTTTAAA  1000

seq1  AAACATATTGGAATAGATTCATAAGGCAGTTTTTTAAAAAGCCTCATAAA  1044
      ||||||  | | |||||||||||||||||||||||  |||  ||||| ||
seq2  AAACATTATTGTATAGATTCATAAGGCAGTTTTTTTTAAAAGCTCATTAA  1050

seq1  G-CTTGAACA-TCTGGAACAGTAAGAAAACGTTTGTGAAATGTATAGAGA  1092
      | |||||||| ||||||||||||   | ||||||||||| ||||||||||
seq2  GCCTTGAACATTCTGGAACAGTA--GATACGTTTGTGAATTGTATAGAGA  1098

seq1  ATGGTCTGGCCCAGCGTGGAGGGA  1116
      || ||||| || ||||||||||||
seq2  AT-GTCTGCCCAAGCGTGGAGGGA  1121