BAC Information

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BAC

Clone NameB6Ng01-194E24
Chromosome9 (Build37)
Map Location 90,821,308 - 90,822,474
singlet/doubletsinglet
Overlap genenone
Upstream geneRasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777, LOC100039925
Downstream geneEG434428, LOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194E24.bB6Ng01-194E24.g
ACCGA017043GA017044
length1,1811,028
definitionB6Ng01-194E24.b B6Ng01-194E24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaagaaaacacaaaaactcaccaatctgaaaatttggaaatttag
aacttggaagaaaacctataaccagctcttgactaaatcaacataatctt
taactaaagtgtaaatatttatccttgccctccattaagtatagctctca
cccttcattaaagagctacaacagatcacagagcttgtacaaaaacacag
tttgtctaaccagttaaatggaaatgaagataaatatgtaagattagaca
gataaaaacatcctgattgctgtcaaagagaccaaaaatacacaatggaa
aaatgacagcaacttcaagaaattgtgctggtcacattgaataactacat
gtagaaggatgaaactacatctatattgcctacactgcacaaaactcaac
tacaaattgatcaaaaacctcaacatgaagcctgatactctgaatctggt
agaggacaaaatacagaatatttttgaactcagagatgtgggaaagacct
tttaagcaagacctagacaggcattaagaccagcaatgaattaaaaggac
tttgtgaaacttaaatatttcagtaaaataaagaacattattagagtgaa
gacatagcctatagtaggaatatatgacctatataaaaggataataccta
gaatatgcccacccacactcccacaaatcaaaaatcaaaccaatggaact
aaactgagttttcaaaagatgaacacaaacaacaagaaatagttttaaat
gttaaactatcttagcattaaaactactttgagccagacaaccggccacc
ttcctggtgagagcacaggggtccgcccgggcccgagaggattctgcctc
gggccccggcgggagcctccttggctccgggactcagcggagggcaggct
gcacgggtgacggtgtggaatacagaggccagccgtttctggaacaggcg
agagccaacagagcttctgaggcagcgcatcttcggctcaagacaaccgg
cacctttcctggccaaagcaacacaagcttctggaaaagaatcctgtttg
ggcttcatcttcagcagggagaagttccaaacactcagaataactggtgc
aacctttccctgaaaagaagagaagccttggctggcagagaactgctctg
accactggaaacttcaagggagaagagctag
gaattctctactaaggaaatttgaatgtctgagaagcacctattctttgt
caacatccttagtcatcagggaaatgcaaatctaaacaaccctgagtttc
caccttacacaaatcagaatggctaagataaaaaactcgggtgacagcag
atgctggtgaggatgtggagaaagaggaacactcctctgttgctggtggg
attgcaaggcagttacaaccactctggaaatcagtctggttgttccttag
aaaattggacatagtactacctgaagacccagctgtaccactcctaggca
tatacctgaaagatcctcaaacatataacaaggacaaatgttccactatg
ttcatagcagacttatttataatagccagaagctggaaagaacccagatg
tcactcaacagaggaacgtatacagaaaacatagtacatttgcacaacag
aatactactcagctattaaaagcaatgacttcataaaattcacaggcaaa
tggatggatgtagaaagtagcatcctgagtgaggtaactcactcacaaaa
gaacacacatggtatgtactcactgataagtggatattagggaaagtatg
tgggatacccacaatacaattcatggaccacatgaaccacaaaaggaagg
aagaccaaagagtagatcattcagtaatacttagaagggggaacaaaata
atcaaggcgggtagagggtgggaaggacttttgaggaagaaaagaaaggg
gatggggaaaagaggagaagaatcaggtacaagaggtgtacagagggtca
ggaaaattgaacagaggtatgtagcaatgggggatgaggaacttaggatt
agcatccagaaagcaagagcctacttagcaccccatggggatgatatagc
caaaaaccccacaagggggtggaagaactgtgagaaccatgccagatgtt
taggcaatcctcaacccagtgagtaataggtcacccaccaacttccaaaa
tttaaccccgaaatgcttgctggtccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_90821308_90822474
seq2: B6Ng01-194E24.b_47_1227

seq1  GAATTCAAGAAAACACAAAAACTCACCAATCTGAAAATTTGGAAATTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAAAACACAAAAACTCACCAATCTGAAAATTTGGAAATTTAG  50

seq1  AACTTGGAAGAAAACCTATAACCAGCTCTTGACTAAATCAACATAATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGAAGAAAACCTATAACCAGCTCTTGACTAAATCAACATAATCTT  100

seq1  TAACTAAAGTGTAAATATTTATCCTTGCCCTCCATTAAGTATAGCTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAAGTGTAAATATTTATCCTTGCCCTCCATTAAGTATAGCTCTCA  150

seq1  CCCTTCATTAAAGAGCTACAACAGATCACAGAGCTTGTACAAAAACACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCATTAAAGAGCTACAACAGATCACAGAGCTTGTACAAAAACACAG  200

seq1  TTTGTCTAACCAGTTAAATGGAAATGAAGATAAATATGTAAGATTAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTAACCAGTTAAATGGAAATGAAGATAAATATGTAAGATTAGACA  250

seq1  GATAAAAACATCCTGATTGCTGTCAAAGAGACCAAAAATACACAATGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAACATCCTGATTGCTGTCAAAGAGACCAAAAATACACAATGGAA  300

seq1  AAATGACAGCAACTTCAAGAAATTGTGCTGGTCACATTGAATAACTACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACAGCAACTTCAAGAAATTGTGCTGGTCACATTGAATAACTACAT  350

seq1  GTAGAAGGATGAAACTACATCTATATTGCCTACACTGCACAAAACTCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGGATGAAACTACATCTATATTGCCTACACTGCACAAAACTCAAC  400

seq1  TACAAATTGATCAAAAACCTCAACATGAAGCCTGATACTCTGAATCTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATTGATCAAAAACCTCAACATGAAGCCTGATACTCTGAATCTGGT  450

seq1  AGAGGACAAAATACAGAATATTTTTGAACTCAGAGATGTGGGAAAGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACAAAATACAGAATATTTTTGAACTCAGAGATGTGGGAAAGACCT  500

seq1  TTTAAGCAAGACCTAGACAGGCATTAAGACCAGCAATGAATTAAAAGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCAAGACCTAGACAGGCATTAAGACCAGCAATGAATTAAAAGGAC  550

seq1  TTTGTGAAACTTAAATATTTCAGTAAAATAAAGAACATTATTAGAGTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAAACTTAAATATTTCAGTAAAATAAAGAACATTATTAGAGTGAA  600

seq1  GACATAGCCTATAGTAGGAATATATGACCTATATAAAAGGATAATACCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAGCCTATAGTAGGAATATATGACCTATATAAAAGGATAATACCTA  650

seq1  GAATATGCCCACCCACACTCCCACAAATCAAAAATCAAACCAATGGAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGCCCACCCACACTCCCACAAATCAAAAATCAAACCAATGGAACT  700

seq1  AAACTGAGTTTTCAAAAGATGAACACAAACAACAAGAAATAGTTTTAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGTTTTCAAAAGATGAACACAAACAACAAGAAATAGTTTTAAAT  750

seq1  GTTAAACTATCTTAGCATTAAAACTACTTTGAGCCAGACAACCGGCCACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACTATCTTAGCATTAAAACTACTTTGAGCCAGACAACCGGCCACC  800

seq1  TTCCTGGTGAGAGCACAGGGGTCCGCCC-GGCCCGAGAGGATTCTGCCTC  849
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTCCTGGTGAGAGCACAGGGGTCCGCCCGGGCCCGAGAGGATTCTGCCTC  850

seq1  GGGCCCCGGCGGGAGCCTCCTTGGCTCCGGGACTCAGCGGAGGGCAGGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCCGGCGGGAGCCTCCTTGGCTCCGGGACTCAGCGGAGGGCAGGCT  900

seq1  GCACGGGTGACGGTGTGGAATACAGAGGCCAGCCGTTTCTGGAACAGGCG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGGTGACGGTGTGGAATACAGAGGCCAGCCGTTTCTGGAACAGGCG  950

seq1  AGAGCC-ACAGAGCTTCTGAGGCAGCGCCATCTTCGGCTCCAGACAACCG  998
      |||||| |||||||||||||||||||| |||||||||||| |||||||||
seq2  AGAGCCAACAGAGCTTCTGAGGCAGCG-CATCTTCGGCTCAAGACAACCG  999

seq1  GCCACCTTCCTGGCCAAAGCAACAC-AGCTTCTGGGAAAG-ATCCTGTTT  1046
      ||  | ||||||||||||||||||| ||||||||| |||| |||||||||
seq2  GCACCTTTCCTGGCCAAAGCAACACAAGCTTCTGGAAAAGAATCCTGTTT  1049

seq1  TGGGCCTTCATCTTCAGCCAGGAGGAGGTCCAAACAC-CAG-ATAACT-G  1093
        || |||||||||||||  |||| || ||||||||| ||| |||||| |
seq2  --GGGCTTCATCTTCAGCAGGGAGAAGTTCCAAACACTCAGAATAACTGG  1097

seq1  TGCA--CCTTCCCTG-AAAGAGGAGA--GCTTGCCT-GCAGAG-ACTGCT  1136
      ||||  | ||||||| ||||| ||||   |||| || |||||| ||||||
seq2  TGCAACCTTTCCCTGAAAAGAAGAGAAGCCTTGGCTGGCAGAGAACTGCT  1147

seq1  CTGACCACT-GAAAC-TCAGAGGAG-AGAGCTAG  1167
      ||||||||| ||||| |||  |||| ||||||||
seq2  CTGACCACTGGAAACTTCAAGGGAGAAGAGCTAG  1181