BAC Information

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BAC

Clone NameB6Ng01-195K09
Chromosome9 (Build37)
Map Location 37,087,497 - 37,242,090
singlet/doubletdoublet
Overlap geneCcdc15, Hepacam, Robo4, Robo3
Upstream geneEG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24, LOC627681, Fez1, Pknox2, LOC100042545, 1810021J13Rik, Slc37a2, LOC100042561
Downstream geneBC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195K09.bB6Ng01-195K09.g
ACCGA018012GA018013
length1,042911
definitionB6Ng01-195K09.b B6Ng01-195K09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,241,054 - 37,242,090)(37,087,497 - 37,088,091)
sequence
gaattccgtgggcaggacactggattgtagagacaaactggttggtgggg
ccatgttcctctactcttgacctgcttttggtttggaatctgccacagct
tcatcttccaccctggaattgagtagcatatagcgctctgagctgtcttc
ctgtgcaggtgtccccttacatatcagaagcagccgctgcacgattacat
agcctaagagcaatccaaacacttacttgtccacagaacctacaggatgg
gaaagccacggtctcttgctccacattcaacatcatttccagtctagaga
aagtgtgtgcaggagaggggcaaaagcaaagatggttggctgcaacatct
ccaaggctaaaataacccctattcgagacagaaccggggctttggttttc
ctgttgcacaccccaccccacctcaccccgaccgggaggataaacagctg
ttatctggttccagcagtttcacacaatttggcattcacccggtctgtga
cactttgcttcctttgttctagacttttggtctcttcaaaactgtcaaac
aacttcctaaaacacgtcatagtggagcaatgcactatgctaataggtgc
gtgctgcctggattctcggggtctcctccaattttactcagttctgagca
cccggcaggatttcctgacggggcgggggggggggcgcatctggagcagg
actccaggtcaagttggatctctgtatccctgtgggttcctagtggcaag
ccacaggattaggaggaatcggacgcgcacgtggggcgagaggtgatcca
gcggtggaattctcttcttcccctccacccccactcccaggtatcctagc
accctgcgctcacgtttccaggacccagaattttgaaaggcactggaaag
ctgggacattgagagctcaacagtgtctgctctcccaatgcctcagtttc
cctgacgtccgagaaaggaaataattcctgctataattttaaaaaagagg
ctgagtcttgacagaatgctccagtccgctgctctgggggag
gaattcatcttttaatcacctatataaattggttctcaaagggaaatgaa
aactggttagtaaagcattttatgtaagaatctgtcttagtcagggttta
tttatttatttatttatttatttatttattatatgtacactgtagctgtc
ttcagatgcaccagaagagggcatcagatctcattacaggtagttgtgaa
ccaccatgtggttgctgggatttgaactcaggaccttcggaagagcagtc
agtgctcttaacctctgagccatctctccagcccccttagtcagggtttc
tattcctgcacaaacatcatgaccaagaagcaagttggggaggaaagggt
ttattcagcttacattttccacattgctgttcatcaccaaggaagtcaga
actggaactcaggcagggcagaaagcaggagctgatgtagaagccatgaa
gggatgttctttactggcttgctcagcctgctctcttatagaacccaaga
ctaccagcccagagatggtcccacccacaaggggcccttcccccttgacc
actaattgagaaaatgccttacagctggaactcgtggaggcatttcccaa
ctgaagtgcttttctctgtgataattccagctgtgtcaagttgacacaaa
attagccagtacaattgaacccttgtcaacttaacacacaaacacatcac
tagtaagcctcaacccttagttcttattcatccccaagatctaaataact
taaaagtcccacagtctttacatattaaaaattcaatccctttaaaatat
ctagtatcttttaaaatacaaagtactttaaaattcaaagtctcttaact
gtgggcttcactaaaaaccttccttcaagagggaaaaatatcaggtcaca
gtcacatcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_37241054_37242090
seq2: B6Ng01-195K09.b_42_1083 (reverse)

seq1  CTCCCCCA-AGACGCGGACT-GAGC-CTCTGTC-AGACTCAGCCCTTCTT  46
      |||||||| ||  ||||||| ||||  |||||| |||||||| |||  ||
seq2  CTCCCCCAGAGCAGCGGACTGGAGCATTCTGTCAAGACTCAG-CCTCTTT  49

seq1  TCTAAAATTATAGCAGGAATTATTTCCTTTCTCGGACGTCAGGGAAACTG  96
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATTATAGCAGGAATTATTTCCTTTCTCGGACGTCAGGGAAACTG  99

seq1  AGGCATTGGGAGAGCAGACACTGTTGAGCTCTCAATGTCCCAGC-TTCCA  145
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGGCATTGGGAGAGCAGACACTGTTGAGCTCTCAATGTCCCAGCTTTCCA  149

seq1  GTGCCTTTC-AAATTCTGGGTCCTGGAAACGTGAGCGCAGGGTGCTAGGA  194
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTTTCAAAATTCTGGGTCCTGGAAACGTGAGCGCAGGGTGCTAGGA  199

seq1  TACCTGGGAGTGGGGGTGGAGGGGAAGAAGAGAATTCCACCGCTGGATCA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGGAGTGGGGGTGGAGGGGAAGAAGAGAATTCCACCGCTGGATCA  249

seq1  CCTCTCGCCCCACGTGCGCGTCCGATTCCTCCTAATCCTGTGGCTTGCCA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCGCCCCACGTGCGCGTCCGATTCCTCCTAATCCTGTGGCTTGCCA  299

seq1  CTAGGAACCCACAGGGATACAGAGATCCAACTTGACCTGGAGTCCTGCTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAACCCACAGGGATACAGAGATCCAACTTGACCTGGAGTCCTGCTC  349

seq1  CAGATGCGCCCCCCCCCCCGCCCCGTCAGGAAATCCTGCCGGGTGCTCAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCGCCCCCCCCCCCGCCCCGTCAGGAAATCCTGCCGGGTGCTCAG  399

seq1  AACTGAGTAAAATTGGAGGAGACCCCGAGAATCCAGGCAGCACGCACCTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGTAAAATTGGAGGAGACCCCGAGAATCCAGGCAGCACGCACCTA  449

seq1  TTAGCATAGTGCATTGCTCCACTATGACGTGTTTTAGGAAGTTGTTTGAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATAGTGCATTGCTCCACTATGACGTGTTTTAGGAAGTTGTTTGAC  499

seq1  AGTTTTGAAGAGACCAAAAGTCTAGAACAAAGGAAGCAAAGTGTCACAGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGAAGAGACCAAAAGTCTAGAACAAAGGAAGCAAAGTGTCACAGA  549

seq1  CCGGGTGAATGCCAAATTGTGTGAAACTGCTGGAACCAGATAACAGCTGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGTGAATGCCAAATTGTGTGAAACTGCTGGAACCAGATAACAGCTGT  599

seq1  TTATCCTCCCGGTCGGGGTGAGGTGGGGTGGGGTGTGCAACAGGAAAACC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTCCCGGTCGGGGTGAGGTGGGGTGGGGTGTGCAACAGGAAAACC  649

seq1  AAAGCCCCGGTTCTGTCTCGAATAGGGGTTATTTTAGCCTTGGAGATGTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCCGGTTCTGTCTCGAATAGGGGTTATTTTAGCCTTGGAGATGTT  699

seq1  GCAGCCAACCATCTTTGCTTTTGCCCCTCTCCTGCACACACTTTCTCTAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCAACCATCTTTGCTTTTGCCCCTCTCCTGCACACACTTTCTCTAG  749

seq1  ACTGGAAATGATGTTGAATGTGGAGCAAGAGACCGTGGCTTTCCCATCCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAATGATGTTGAATGTGGAGCAAGAGACCGTGGCTTTCCCATCCT  799

seq1  GTAGGTTCTGTGGACAAGTAAGTGTTTGGATTGCTCTTAGGCTATGTAAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTTCTGTGGACAAGTAAGTGTTTGGATTGCTCTTAGGCTATGTAAT  849

seq1  CGTGCAGCGGCTGCTTCTGATATGTAAGGGGACACCTGCACAGGAAGACA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCAGCGGCTGCTTCTGATATGTAAGGGGACACCTGCACAGGAAGACA  899

seq1  GCTCAGAGCGCTATATGCTACTCAATTCCAGGGTGGAAGATGAAGCTGTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAGCGCTATATGCTACTCAATTCCAGGGTGGAAGATGAAGCTGTG  949

seq1  GCAGATTCCAAACCAAAAGCAGGTCAAGAGTAGAGGAACATGGCCCCACC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTCCAAACCAAAAGCAGGTCAAGAGTAGAGGAACATGGCCCCACC  999

seq1  AACCAGTTTGTCTCTACAATCCAGTGTCCTGCCCACGGAATTC  1037
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTTTGTCTCTACAATCCAGTGTCCTGCCCACGGAATTC  1042

seq1: chr9_37087497_37088091
seq2: B6Ng01-195K09.g_65_659

seq1  GAATTCATCTTTTAATCACCTATATAAATTGGTTCTCAAAGGGAAATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTTTAATCACCTATATAAATTGGTTCTCAAAGGGAAATGAA  50

seq1  AACTGGTTAGTAAAGCATTTTATGTAAGAATCTGTCTTAGTCAGGGTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTTAGTAAAGCATTTTATGTAAGAATCTGTCTTAGTCAGGGTTTA  100

seq1  TTTATTTATTTATTTATTTATTTATTTATTATATGTACACTGTAGCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTATTTATTTATTTATTTATTATATGTACACTGTAGCTGTC  150

seq1  TTCAGATGCACCAGAAGAGGGCATCAGATCTCATTACAGGTAGTTGTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATGCACCAGAAGAGGGCATCAGATCTCATTACAGGTAGTTGTGAA  200

seq1  CCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTC  250

seq1  AGTGCTCTTAACCTCTGAGCCATCTCTCCAGCCCCCTTAGTCAGGGTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCTTAACCTCTGAGCCATCTCTCCAGCCCCCTTAGTCAGGGTTTC  300

seq1  TATTCCTGCACAAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTGCACAAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGT  350

seq1  TTATTCAGCTTACATTTTCCACATTGCTGTTCATCACCAAGGAAGTCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAGCTTACATTTTCCACATTGCTGTTCATCACCAAGGAAGTCAGA  400

seq1  ACTGGAACTCAGGCAGGGCAGAAAGCAGGAGCTGATGTAGAAGCCATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAACTCAGGCAGGGCAGAAAGCAGGAGCTGATGTAGAAGCCATGAA  450

seq1  GGGATGTTCTTTACTGGCTTGCTCAGCCTGCTCTCTTATAGAACCCAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTTCTTTACTGGCTTGCTCAGCCTGCTCTCTTATAGAACCCAAGA  500

seq1  CTACCAGCCCAGAGATGGTCCCACCCACAAGGGGCCCTTCCCCCTTGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAGCCCAGAGATGGTCCCACCCACAAGGGGCCCTTCCCCCTTGACC  550

seq1  ACTAATTGAGAAAATGCCTTACAGCTGGAACTCGTGGAGGCATTT  595
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTGAGAAAATGCCTTACAGCTGGAACTCGTGGAGGCATTT  595