BAC Information

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BAC

Clone NameB6Ng01-196B24
Chromosome9 (Build37)
Map Location 27,205,002 - 27,335,830
singlet/doubletdoublet
Overlap geneSpata19
Upstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3, Igsf9b
Downstream geneLOC666440, LOC100041202, Opcml
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196B24.bB6Ng01-196B24.g
ACCGA018350GA018351
length1461,104
definitionB6Ng01-196B24.b B6Ng01-196B24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,205,002 - 27,205,146)(27,334,717 - 27,335,830)
sequence
tcttcaaggtggtcccaagagtaccttgggatagggtccaagggcttaga
ggagcttctaagagattccaaggaggagagcaatgcgggagctctgcgca
gaagctttagtaatggagtgaggtgtgtgtgtgtgtgtgtgtgtgc
gaattcctgatgcactttaactggtggaaggcagtgagactcctcaagcc
tctgaggaatcaaaacatcaaatgacgcaggttaagaaatgcaaaccgag
ccacatgctgtgctcttcaaatatttccaatgatttttttctgatgcttt
gaactgattcaacccaaagtgtatttggaccctaaatagttattcctatg
atttttaaactgggtataatttaattcacagagtcccaactctccactgc
tcctccatgcaaggctggaagtacacagcctctgaggccagtgttgcttt
tctccttaggacaaaagaattatgtttctaaagaacacaaccaagttacg
aagggaaatgaacagaacagtagcgccattgccagaggaatggttagcct
ggatctaaagaaaccaagagtgagctgtggaggagtttatcttccaacta
gatgttttttctctattctagatccttcttcaagatactcttatttccca
acagcagaagaaagagtgcgacacaaaaaaagtaagaaagacagggggtc
attaagccaagccattaagaatcagcccatcctcttgcccattggctgaa
cccaaagctgtaccatcaccaccagattgaggcatgtgcttccccagagc
cagagaacccttagaagcatctctgttcaggcaggaaggctaactgagga
tgaggagagcctgaagcagccaccttctggagagactcctgtgcccctac
ctgttgggtttgctctaaagaaccggtatgtgtgtcctcctggcaggaag
agccctattgccacatgcagaaccatttgcaaagcctgtgtcctttaaac
gttcacagtatttttatcagacattaggaaagcccttggtaatttgcagc
aatttggtatgcttgctttgctttagaaatccacagcaattcaataaaca
ccccagtcactgtggctgttacacacacacacacatatctctccagctgc
taccagctgtcatcagaaagagagcatcagagctttctacactccccagc
tctttgaaccctcacacattcttctctctgcttacattgagcatcccaga
agac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_27205002_27205146
seq2: B6Ng01-196B24.b_50_194

seq1  TCTTCAAGGTGGTCCCAAGAGTACCTTGGGATAGGGTCCAAGGGCTTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAGGTGGTCCCAAGAGTACCTTGGGATAGGGTCCAAGGGCTTAGA  50

seq1  GGAGCTTCTAAGAGATTCCAAGGAGGAGAGCAATGCGGGAGCTCTGCGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTCTAAGAGATTCCAAGGAGGAGAGCAATGCGGGAGCTCTGCGCA  100

seq1  GAAGCTTTAGTAATGGAGTGAGGTGTGTGTGTGTGTGTGTGTGTG  145
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTTAGTAATGGAGTGAGGTGTGTGTGTGTGTGTGTGTGTG  145

seq1: chr9_27334717_27335830
seq2: B6Ng01-196B24.g_65_1168 (reverse)

seq1  GTCTTCTTGGGGATGCTC-ATGTTAGCAGGAGAG-AGAATGTGTGAGGG-  47
      |||||||  ||||||||| |||| |||| ||||| |||||||||||||| 
seq2  GTCTTCT--GGGATGCTCAATGTAAGCA-GAGAGAAGAATGTGTGAGGGT  47

seq1  TCAAAGAGCTGGGGAGGTTGTAGAAAGGCTCTGATGGCTCTCTTTCCTGG  97
      ||||||||||||||||  |||||||| |||||||| ||||||||| ||| 
seq2  TCAAAGAGCTGGGGAG--TGTAGAAA-GCTCTGAT-GCTCTCTTT-CTG-  91

seq1  AATGACAGCTGGTAGGCAGCTGGAGAGATATTGTGTGTGTGTGTGTTAAC  147
       ||||||||||||| ||||||||||||||| |||||||||||||| ||||
seq2  -ATGACAGCTGGTA-GCAGCTGGAGAGATA-TGTGTGTGTGTGTG-TAAC  137

seq1  AGCCACAGTGACT-GGGTGTTTATTGAATTGCTGTGGATTTTCTAAAAGC  196
      ||||||||||||| |||||||||||||||||||||||| ||||| |||||
seq2  AGCCACAGTGACTGGGGTGTTTATTGAATTGCTGTGGA-TTTCT-AAAGC  185

seq1  AAAGCAAGCATACCAAATTGCTGCAAATTACCAAGGGCTTTCCTAATGTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAGCATACCAAATTGCTGCAAATTACCAAGGGCTTTCCTAATGTC  235

seq1  TGATAAAAATACTGTGAACGTTT-AAGGACACAGGCTTTGCAAATGGTTC  295
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGATAAAAATACTGTGAACGTTTAAAGGACACAGGCTTTGCAAATGGTTC  285

seq1  TGCATGTGGCAATAGGGCTCTTCCTGCCAGGAGGACACACATACCGGTTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGGCAATAGGGCTCTTCCTGCCAGGAGGACACACATACCGGTTC  335

seq1  TTTAGAGCAAACCCAACAGGTAGGGGCACAGGAGTCTCTCCAGAAGGTGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGCAAACCCAACAGGTAGGGGCACAGGAGTCTCTCCAGAAGGTGG  385

seq1  CTGCTTCAGGCTCTCCTCATCCTCAGTTAGCCTTCCTGCCTGAACAGAGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCAGGCTCTCCTCATCCTCAGTTAGCCTTCCTGCCTGAACAGAGA  435

seq1  TGCTTCTAAGGGTTCTCTGGCTCTGGGGAAGCACATGCCTCAATCTGGTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTAAGGGTTCTCTGGCTCTGGGGAAGCACATGCCTCAATCTGGTG  485

seq1  GTGATGGTACAGCTTTGGGTTCAGCCAATGGGCAAGAGGATGGGCTGATT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGTACAGCTTTGGGTTCAGCCAATGGGCAAGAGGATGGGCTGATT  535

seq1  CTTAATGGCTTGGCTTAATGACCCCCTGTCTTTCTTACTTTTTTTGTGTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGGCTTGGCTTAATGACCCCCTGTCTTTCTTACTTTTTTTGTGTC  585

seq1  GCACTCTTTCTTCTGCTGTTGGGAAATAAGAGTATCTTGAAGAAGGATCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTTTCTTCTGCTGTTGGGAAATAAGAGTATCTTGAAGAAGGATCT  635

seq1  AGAATAGAGAAAAAACATCTAGTTGGAAGATAAACTCCTCCACAGCTCAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGAGAAAAAACATCTAGTTGGAAGATAAACTCCTCCACAGCTCAC  685

seq1  TCTTGGTTTCTTTAGATCCAGGCTAACCATTCCTCTGGCAATGGCGCTAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTTTCTTTAGATCCAGGCTAACCATTCCTCTGGCAATGGCGCTAC  735

seq1  TGTTCTGTTCATTTCCCTTCGTAACTTGGTTGTGTTCTTTAGAAACATAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGTTCATTTCCCTTCGTAACTTGGTTGTGTTCTTTAGAAACATAA  785

seq1  TTCTTTTGTCCTAAGGAGAAAAGCAACACTGGCCTCAGAGGCTGTGTACT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGTCCTAAGGAGAAAAGCAACACTGGCCTCAGAGGCTGTGTACT  835

seq1  TCCAGCCTTGCATGGAGGAGCAGTGGAGAGTTGGGACTCTGTGAATTAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCTTGCATGGAGGAGCAGTGGAGAGTTGGGACTCTGTGAATTAAA  885

seq1  TTATACCCAGTTTAAAAATCATAGGAATAACTATTTAGGGTCCAAATACA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACCCAGTTTAAAAATCATAGGAATAACTATTTAGGGTCCAAATACA  935

seq1  CTTTGGGTTGAATCAGTTCAAAGCATCAGAAAAAAATCATTGGAAATATT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGTTGAATCAGTTCAAAGCATCAGAAAAAAATCATTGGAAATATT  985

seq1  TGAAGAGCACAGCATGTGGCTCGGTTTGCATTTCTTAACCTGCGTCATTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGCACAGCATGTGGCTCGGTTTGCATTTCTTAACCTGCGTCATTT  1035

seq1  GATGTTTTGATTCCTCAGAGGCTTGAGGAGTCTCACTGCCTTCCACCAGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTTGATTCCTCAGAGGCTTGAGGAGTCTCACTGCCTTCCACCAGT  1085

seq1  TAAAGTGCATCAGGAATTC  1114
      |||||||||||||||||||
seq2  TAAAGTGCATCAGGAATTC  1104