BAC Information

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BAC

Clone NameB6Ng01-196H13
Chromosome9 (Build37)
Map Location 40,696,701 - 40,848,322
singlet/doubletdoublet
Overlap gene4931429I11Rik, Crtam, 2810457I06Rik
Upstream geneOlfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148, 9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx
Downstream geneLOC628495, LOC100042464, EG667566, 6720432D03Rik, Sorl1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196H13.bB6Ng01-196H13.g
ACCGA018603GA018604
length8511,208
definitionB6Ng01-196H13.b B6Ng01-196H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,847,483 - 40,848,322)(40,696,701 - 40,697,881)
sequence
gaattcttagaaacagaccataaacataagacaaaagttagcatgatgta
gggcaagtgaggcctgggtctggtacctctcagatttggtcaagattttt
gtatctacttttgggggtggaaagaaacagagaacacttgggcctggatt
attgtttgtgtgtttgttggtgctggcgactgtacccagaatcacatgag
catgcattccactgctaacttacacccccagcctccggttataatgttaa
atctgcttaactcctccattattagaatatataatcaaagttatttactg
tccctttatcatatccctaggatattttgtcttcaatcttccttgagcct
tgatattctcaaggatgtctgggatgggatactcagcttgttttgttttt
agtttttcgagacagagttgctctgtgtagccttagctgtcctggaactt
gctctgtagatcaggatggcttcaaattcagaactcagagatctgctttc
ttctgctgggattaaaagtttgtgccaccaccagcgggcatgatactcaa
cttgaagtgctgggctaggaagacttctgagttgctctaagttcttcaaa
gggaagactgtactaccagggccagaggtactctgagccaaaaaatgtgc
tatgctcaagtagctgagcagagttttgactatgccctgtttccaggaaa
agcaatactgcctttcccctgccccacccagaaatgagcttaaaagagat
ctcctagtgagtaaatttttgtcttttaaaattagtttaaaaaaacaatt
cttacgggctcttgccttgctttgaagattgtagagggacaggggaggag
a

gaattccctcttttgtgtagaaggaaggaaacacagaatagccctcctga
cgtcacagtaagagatgtatacgcacggcttgggagttatgaggataaga
gcatagaacctcaacattgcgtctgtggaaggctctgaatagctctacgt
gtttgtggaaatcgcaaggagtagattggagacataactcagtgggtaag
ggcacttgtggctattcctggtaaactaagtcccaaactcaggattcaca
tggtggaaggagagagcagtctcatgcacatagagacatgcaaaatagct
aaatgtagtttaaaaaaaaattcctaaacatggttctctgcattcgtatg
atggggtccacaactgtggaaccaatcacccattgagaatatttgaaaag
atatgttttctgtgggaacacgttcagtctcttgttgtcaccattccctg
aacaatgcaatctgacagccatgtttatggcatttacctgtgctatgcta
aatgtcataaataacctagagtgggaggatatgcagaagttttacacaca
cacacacacacacacacacacacacacacacacacacacacactccacac
cattttaatcaagggccttggatagccacagagttttcctagctgtgggg
agtcctggatcaaattctgaggatgttggcttgccattttcttgaatcag
gcttaatttaaaaatctaggaatgtagctgagtgaagagaggggagaagc
aggagaaaagagaaggtctgacaggacacagacagatggacggatgaatg
gacagacacgcttgcatatgcaggctctcaagagaatgagatgaaacagg
acaggcagaattgggaaggtgaccaattaagacattaagttgttttgtga
cacacggacgcgtctgtattggggcgctgataacagggccatcagctcat
tttcaggggggctgctgctctttctttcgcctcagtcctcagatcaaagc
cggaacttgtccgccccgctttttttcacccggaatgggggatgcttatt
ttatacctcctttatgtgtgtgacggtgaggagaccccttccagtaaact
tggatttctataaggccagccaaattaaagtgttactcatggaaaggagt
gtccaggctgtataagtcgtaatctacataaatcaagctccagtattcga
cttacctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_40847483_40848322
seq2: B6Ng01-196H13.b_32_882 (reverse)

seq1  TCTCCT-CCCTGTCCCTCTCCAATCTTC-ATGCAAGCCAAGAGCCCGTAT  48
      |||||| |||||||||||| |||||||| | ||||| |||||||||||| 
seq2  TCTCCTCCCCTGTCCCTCTACAATCTTCAAAGCAAGGCAAGAGCCCGTAA  50

seq1  GAATTG-TTTTTTAAACT-ATTTTAAAAGACAAAAA-TTACTCACTA-GA  94
      |||||| ||||||||||| ||||||||||||||||| |||||||||| ||
seq2  GAATTGTTTTTTTAAACTAATTTTAAAAGACAAAAATTTACTCACTAGGA  100

seq1  GATCTCTTTTAAGCTCATTTCTGGGT-GGGCA-GGGAAAGGCAGTATTGC  142
      |||||||||||||||||||||||||| ||||| |||||||||||||||||
seq2  GATCTCTTTTAAGCTCATTTCTGGGTGGGGCAGGGGAAAGGCAGTATTGC  150

seq1  TTTTCCTGG-AACAGGGCATAGTCAAAACTCTGCTCAGCTACTTGAGCAT  191
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGGAAACAGGGCATAGTCAAAACTCTGCTCAGCTACTTGAGCAT  200

seq1  AGCACA-TTTTTGGCTCAGAGTACCTCTGG-CCTGGTAGTACAGTCTTCC  239
      |||||| ||||||||||||||||||||||| |||||||||||||||||||
seq2  AGCACATTTTTTGGCTCAGAGTACCTCTGGCCCTGGTAGTACAGTCTTCC  250

seq1  CTTTGAAGAACTTAGAGCAACTCAGAAGTCTTCCTAGCCCAGCACTTCAA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAGAACTTAGAGCAACTCAGAAGTCTTCCTAGCCCAGCACTTCAA  300

seq1  GTTGAGTATCATGCCCGCTGGTGGTGGCACAAACTTTTAATCCCAGCAGA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGTATCATGCCCGCTGGTGGTGGCACAAACTTTTAATCCCAGCAGA  350

seq1  AGAAAGCAGATCTCTGAGTTCTGAATTTGAAGCCATCCTGATCTACAGAG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCAGATCTCTGAGTTCTGAATTTGAAGCCATCCTGATCTACAGAG  400

seq1  CAAGTTCCAGGACAGCTAAGGCTACACAGAGCAACTCTGTCTCGAAAAAC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCCAGGACAGCTAAGGCTACACAGAGCAACTCTGTCTCGAAAAAC  450

seq1  TAAAAACAAAACAAGCTGAGTATCCCATCCCAGACATCCTTGAGAATATC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAAAACAAGCTGAGTATCCCATCCCAGACATCCTTGAGAATATC  500

seq1  AAGGCTCAAGGAAGATTGAAGACAAAATATCCTAGGGATATGATAAAGGG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCAAGGAAGATTGAAGACAAAATATCCTAGGGATATGATAAAGGG  550

seq1  ACAGTAAATAACTTTGATTATATATTCTAATAATGGAGGAGTTAAGCAGA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAATAACTTTGATTATATATTCTAATAATGGAGGAGTTAAGCAGA  600

seq1  TTTAACATTATAACCGGAGGCTGGGGGTGTAAGTTAGCAGTGGAATGCAT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACATTATAACCGGAGGCTGGGGGTGTAAGTTAGCAGTGGAATGCAT  650

seq1  GCTCATGTGATTCTGGGTACAGTCGCCAGCACCAACAAACACACAAACAA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGTGATTCTGGGTACAGTCGCCAGCACCAACAAACACACAAACAA  700

seq1  TAATCCAGGCCCAAGTGTTCTCTGTTTCTTTCCACCCCCAAAAGTAGATA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCAGGCCCAAGTGTTCTCTGTTTCTTTCCACCCCCAAAAGTAGATA  750

seq1  CAAAAATCTTGACCAAATCTGAGAGGTACCAGACCCAGGCCTCACTTGCC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATCTTGACCAAATCTGAGAGGTACCAGACCCAGGCCTCACTTGCC  800

seq1  CTACATCATGCTAACTTTTGTCTTATGTTTATGGTCTGTTTCTAAGAATT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCATGCTAACTTTTGTCTTATGTTTATGGTCTGTTTCTAAGAATT  850

seq1  C  840
      |
seq2  C  851


seq1: chr9_40696701_40697881
seq2: B6Ng01-196H13.g_66_1273

seq1  GAATTCCCTCTTTTGTGTAGAAGGAAGGAAACACAGAATAGCCCTCCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCTTTTGTGTAGAAGGAAGGAAACACAGAATAGCCCTCCTGA  50

seq1  CGTCACAGTAAGAGATGTATACGCACGGCTTGGGAGTTATGAGGATAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCACAGTAAGAGATGTATACGCACGGCTTGGGAGTTATGAGGATAAGA  100

seq1  GCATAGAACCTCAACATTGCGTCTGTGGAAGGCTCTGAATAGCTCTACGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGAACCTCAACATTGCGTCTGTGGAAGGCTCTGAATAGCTCTACGT  150

seq1  GTTTGTGGAAATCGCAAGGAGTAGATTGGAGACATAACTCAGTGGGTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGGAAATCGCAAGGAGTAGATTGGAGACATAACTCAGTGGGTAAG  200

seq1  GGCACTTGTGGCTATTCCTGGTAAACTAAGTCCCAAACTCAGGATTCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTGTGGCTATTCCTGGTAAACTAAGTCCCAAACTCAGGATTCACA  250

seq1  TGGTGGAAGGAGAGAGCAGTCTCATGCACATAGAGACATGCAAAATAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGAAGGAGAGAGCAGTCTCATGCACATAGAGACATGCAAAATAGCT  300

seq1  AAATGTAGTTTAAAAAAAAATTCCTAAACATGGTTCTCTGCATTCGTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAGTTTAAAAAAAAATTCCTAAACATGGTTCTCTGCATTCGTATG  350

seq1  ATGGGGTCCACAACTGTGGAACCAATCACCCATTGAGAATATTTGAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTCCACAACTGTGGAACCAATCACCCATTGAGAATATTTGAAAAG  400

seq1  ATATGTTTTCTGTGGGAACACGTTCAGTCTCTTGTTGTCACCATTCCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTTCTGTGGGAACACGTTCAGTCTCTTGTTGTCACCATTCCCTG  450

seq1  AACAATGCAATCTGACAGCCATGTTTATGGCATTTACCTGTGCTATGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGCAATCTGACAGCCATGTTTATGGCATTTACCTGTGCTATGCTA  500

seq1  AATGTCATAAATAACCTAGAGTGGGAGGATATGCAGAAGTTTTACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCATAAATAACCTAGAGTGGGAGGATATGCAGAAGTTTTACACACA  550

seq1  CACACACACACACACACACACACACACACACACACACACACACTCCACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACACTCCACAC  600

seq1  CATTTTAATCAAGGGCCTTGGATAGCCACAGAGTTTTCCTAGCTGTGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAATCAAGGGCCTTGGATAGCCACAGAGTTTTCCTAGCTGTGGGG  650

seq1  AGTCCTGGATCAAATTCTGAGGATGTTGGCTTGCCATTTTCTTGAATCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGGATCAAATTCTGAGGATGTTGGCTTGCCATTTTCTTGAATCAG  700

seq1  GCTTAATTTAAAAATCTAGGAATGTAGCTGAGTGAAGAGAGGGGAGAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAATTTAAAAATCTAGGAATGTAGCTGAGTGAAGAGAGGGGAGAAGC  750

seq1  AGGAGAAAAGAGAAGGTCTGACAGGACACAGACAGATGGACGGATGAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAAAGAGAAGGTCTGACAGGACACAGACAGATGGACGGATGAATG  800

seq1  GACAGACACGCTTGCATATGCAGGCTCTCAGGAGAATGAGATG-AACAGG  849
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  GACAGACACGCTTGCATATGCAGGCTCTCAAGAGAATGAGATGAAACAGG  850

seq1  ACAGGCAGAATT-GGAAGGTGACCAATTAAGACATTAAG-TGTTTTGTGA  897
      |||||||||||| |||||||||||||||||||||||||| ||||||||||
seq2  ACAGGCAGAATTGGGAAGGTGACCAATTAAGACATTAAGTTGTTTTGTGA  900

seq1  CACACGGACGCGTCTGTATT-GGGCGCTGATAACAAGGCCATCAGCTCAT  946
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  CACACGGACGCGTCTGTATTGGGGCGCTGATAACAGGGCCATCAGCTCAT  950

seq1  TTTCA-GGGGGCTGCTGC-CTT--CTTCAGCTCAGTCCTCAGATCAAAG-  991
      ||||| |||||||||||| |||   |||  ||||||||||||||||||| 
seq2  TTTCAGGGGGGCTGCTGCTCTTTCTTTCGCCTCAGTCCTCAGATCAAAGC  1000

seq1  CGGAAC-TGTCCG-CCCGC-TTTTTTCACCCGGAAT-GGGGATGC-TAAT  1036
      |||||| |||||| ||||| |||||||||||||||| |||||||| || |
seq2  CGGAACTTGTCCGCCCCGCTTTTTTTCACCCGGAATGGGGGATGCTTATT  1050

seq1  TTATA-CTCCTTAA--TGTGTGACGGTGA-GAGACCCCTT-CAATTAACT  1081
      ||||| |||||| |  ||||||||||||| |||||||||| || | ||||
seq2  TTATACCTCCTTTATGTGTGTGACGGTGAGGAGACCCCTTCCAGTAAACT  1100

seq1  --GAATTCTATA--GCCAG-CAAAATAAAGTG-TACACA--GAAAAGAG-  1122
        || |||||||  ||||| |||| ||||||| ||| ||  |||| ||| 
seq2  TGGATTTCTATAAGGCCAGCCAAATTAAAGTGTTACTCATGGAAAGGAGT  1150

seq1  GTGCAGGCTGGAAGAGCCGAAATTCTCATTAAATCAAAAGGTCCAGTATT  1172
      || ||||||| |  || || || |||   ||||||  ||| |||||||||
seq2  GTCCAGGCTGTATAAGTCGTAA-TCTACATAAATC--AAGCTCCAGTATT  1197

seq1  C--ATTACCTC  1181
      |   |||||||
seq2  CGACTTACCTC  1208


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