BAC Information

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BAC

Clone NameB6Ng01-197F05
Chromosome9 (Build37)
Map Location 82,656,299 - 82,767,632
singlet/doubletdoublet
Overlap geneIrak1bp1, Phip
Upstream gene4930486G11Rik, LOC100039085
Downstream geneLOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222, Elovl4, Ttk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197F05.bB6Ng01-197F05.g
ACCGA019221GA019222
length1,1581,121
definitionB6Ng01-197F05.b B6Ng01-197F05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,656,299 - 82,657,448)(82,766,497 - 82,767,632)
sequence
gaattctgcacatgaatttcattaggtatttcatgattaggaggtgaacc
tcatgtgaacaccttctcctagtttttaacattttttaaaatgtttttct
taaagctattcagttccacctctccctttatgactccagccactaaatac
ctactggtctatatttctgtgccaaaatcctagggctagaactagcttcc
agaatcttctaaaagtgtttacatatagtctctttgaaggagggaaaata
gccccagcgaatactcagatttgttgttcctttcacagaatcttctttaa
tttattctctcgtatcattacatgaagttgatacagtagcattggctgtc
atcccaagtattctatagactccacagggtgactaattgtgctcagaagt
ttaagactagtctgggcaacataataagagtttgtcttaattaaaaaaaa
aaaagaaaagaattaatcattgaaatggagtgttaattttatggcctctt
cccttccactttttcctttaatgcatgcttgtttgctgctggactcacca
ctcagcataaacaattaattatctataagcaaaattagatggtattctac
aatgtcttcatctatcacaaaagaaaattacaaagccaacttcactggct
accacttgtgaacagagcttgatatataagcagtaaatcctggtttagag
tcaaaatgtggagccttttgttcgaagtgcttagggaacacagccactaa
aattccaaacatgaaacattttcttttcttccatgggaattttcttgaca
tgttacagcattttttttttatactcccaactcaccggacttgaaccaga
gataacaaaatatacaattattagagtgcattgtatgactcatgtttata
gtacttgaggagtttgaagaaacagctgtacaatatgtgcagatgttaac
aattccacaacttcagatttcatagttccacacatgcaaacgcatcttta
agaagcataacaatggctgcccaaaactaactcatgtggctcagaccatg
ctgccagcatttgatgttttctcactgatgggggaagaatagaactggac
tataaagggagatgaaatggtctatttgggtagaagtggatgcatgatag
agagaaag

gaattcctcctttgaagcaggcctcaaggtaggttacccataaacaacgt
gccactattgcaccaggggacacgtgttgcctgacagttggtgtgtgcat
ataggctccagctctggataagacagttgttttcttctcctgcaggctgc
agtgtaccttctgcattgtataagaataggctgcaggtagagggtctggg
gaatccactgagacttctgtacccaaagcgaggaatggtttcattaatag
ggccttgtcatctagttatgatagtcaatcagaaccattgggaaaaagct
tgtgttgtgtggggtacttcctgggcgtcccttaccagtaactcagaaag
atgtattctgaacccaacaatgaggggttttttgtttgtttgtttgtttt
tgtttttttgtttttaataacccacatcttctgggtagtagctacccgtt
cagggttcttatattcaaattcttcttttaaaaataagatcttaaagttg
gcttacaaaatagtggtattttgtttgtttgtttgtttgtttgtttgttt
ttcatagatttattagtttggactaacctacctccaacctctcctcagtc
ctatctctccttacacatttaattccaaggattctcccacctctcctttt
aatgtgactgggattctgtttcccgctgggttttgttttttttttccttt
ccttttctgaatagttttactttgaactgcatgttgtcagatattagaat
actaagtactgtttcctaattatacttgcccagaacacctttctctatct
atttgcactaaaacgaaaccattttgtaaccccagtctgatagtctattt
tttttaaatggggaagttgtggctgttgatattcagagttattcacattt
ttgtctgtattcttatcacttcattgtttctttgtttttggtgttttctt
ggacttttttgataaattgtctagcgtttacttatcttctacggctcttg
atgtgttaatcctctctcattttacataagtcttctattatcatagtgct
gctagcggttctaaatcattttatgtttttctctcaaggttctgatttta
ttcatatcggatttactacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_82656299_82657448
seq2: B6Ng01-197F05.b_46_1203

seq1  GAATTCTGCACATGAATTTCATTAGGTATTTCATGATTAGGAGGTGAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCACATGAATTTCATTAGGTATTTCATGATTAGGAGGTGAACC  50

seq1  TCATGTGAACACCTTCTCCTAGTTTTTAACATTTTTTAAAATGTTTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGAACACCTTCTCCTAGTTTTTAACATTTTTTAAAATGTTTTTCT  100

seq1  TAAAGCTATTCAGTTCCACCTCTCCCTTTATGACTCCAGCCACTAAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTATTCAGTTCCACCTCTCCCTTTATGACTCCAGCCACTAAATAC  150

seq1  CTACTGGTCTATATTTCTGTGCCAAAATCCTAGGGCTAGAACTAGCTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGGTCTATATTTCTGTGCCAAAATCCTAGGGCTAGAACTAGCTTCC  200

seq1  AGAATCTTCTAAAAGTGTTTACATATAGTCTCTTTGAAGGAGGGAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTTCTAAAAGTGTTTACATATAGTCTCTTTGAAGGAGGGAAAATA  250

seq1  GCCCCAGCGAATACTCAGATTTGTTGTTCCTTTCACAGAATCTTCTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGCGAATACTCAGATTTGTTGTTCCTTTCACAGAATCTTCTTTAA  300

seq1  TTTATTCTCTCGTATCATTACATGAAGTTGATACAGTAGCATTGGCTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTCTCGTATCATTACATGAAGTTGATACAGTAGCATTGGCTGTC  350

seq1  ATCCCAAGTATTCTATAGACTCCACAGGGTGACTAATTGTGCTCAGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAAGTATTCTATAGACTCCACAGGGTGACTAATTGTGCTCAGAAGT  400

seq1  TTAAGACTAGTCTGGGCAACATAATAAGAGTTTGTCTTAATTAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACTAGTCTGGGCAACATAATAAGAGTTTGTCTTAATTAAAAAAAA  450

seq1  AAAAGAAAAGAATTAATCATTGAAATGGAGTGTTAATTTTATGGCCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAGAATTAATCATTGAAATGGAGTGTTAATTTTATGGCCTCTT  500

seq1  CCCTTCCACTTTTTCCTTTAATGCATGCTTGTTTGCTGCTGGACTCACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCACTTTTTCCTTTAATGCATGCTTGTTTGCTGCTGGACTCACCA  550

seq1  CTCAGCATAAACAATTAATTATCTATAAGCAAAATTAGATGGTATTCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCATAAACAATTAATTATCTATAAGCAAAATTAGATGGTATTCTAC  600

seq1  AATGTCTTCATCTATCACAAAAGAAAATTACAAAGCCAACTTCACTGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTTCATCTATCACAAAAGAAAATTACAAAGCCAACTTCACTGGCT  650

seq1  ACCACTTGTGAACAGAGCTTGATATATAAGCAGTAAATCCTGGTTTAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTGTGAACAGAGCTTGATATATAAGCAGTAAATCCTGGTTTAGAG  700

seq1  TCAAAATGTGGAGCCTTTTGTTCGAAGTGCTTAGGGAACACAGCCACTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATGTGGAGCCTTTTGTTCGAAGTGCTTAGGGAACACAGCCACTAA  750

seq1  AATTCCAAACATGAAACATTTTCTTTTCTTCCATGGGAATTTTCTTGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAAACATGAAACATTTTCTTTTCTTCCATGGGAATTTTCTTGACA  800

seq1  TGTTACAGCA-TTTTTTTTTATACTCCCAACTCACCGGACTTGAACCAGA  849
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGTTACAGCATTTTTTTTTTATACTCCCAACTCACCGGACTTGAACCAGA  850

seq1  GATAACAAAATATACAATTATTAGAGTGCATTGTATGACTCATGTTTATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACAAAATATACAATTATTAGAGTGCATTGTATGACTCATGTTTATA  900

seq1  GTACTTGAGGAGTTTGAAGAAACAGCTGTACAATATGTGCAGATG-TAAC  948
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTACTTGAGGAGTTTGAAGAAACAGCTGTACAATATGTGCAGATGTTAAC  950

seq1  AATTCCACAAC-TCAGATTTCATAG-TCCACACATGCAAACGCAATCTTT  996
      ||||||||||| ||||||||||||| ||||||||||||||||| ||||||
seq2  AATTCCACAACTTCAGATTTCATAGTTCCACACATGCAAACGC-ATCTTT  999

seq1  -AGAAGCAT-ACAATGGCTGCCCAAAACTAACTCATGTTGGCTCCAGACC  1044
       |||||||| ||||||||||||||||||||||||||| ||||| ||||||
seq2  AAGAAGCATAACAATGGCTGCCCAAAACTAACTCATG-TGGCT-CAGACC  1047

seq1  ATGCTGCCAGCATTTGATGTTTTCTCACTGAT-GGGGAAG-ATAG-ACTG  1091
      |||||||||||||||||||||||||||||||| ||||||| |||| ||||
seq2  ATGCTGCCAGCATTTGATGTTTTCTCACTGATGGGGGAAGAATAGAACTG  1097

seq1  GACTATAAA-GGAGATGATATTGGTCTATTT-GGTAGAAGTGATTGGATG  1139
      ||||||||| |||||||| | |||||||||| ||||||||||  || |||
seq2  GACTATAAAGGGAGATGA-AATGGTCTATTTGGGTAGAAGTGGATGCATG  1146

seq1  ATAGAGA-AAAG  1150
      ||||||| ||||
seq2  ATAGAGAGAAAG  1158


seq1: chr9_82766497_82767632
seq2: B6Ng01-197F05.g_66_1186 (reverse)

seq1  GTGTAGTAAATCTAATAATGGAAATAAAAATCAGAACTTTCCAAGAGAAA  50
      ||||||||||||  || |||  ||| ||||||||||| ||   |||||||
seq2  GTGTAGTAAATCCGAT-ATG--AAT-AAAATCAGAACCTT--GAGAGAAA  44

seq1  AACATAAAAGGAATTTAAGAACGCTAAGCCAGCACTATGGATAATAGAAA  100
      ||||||||| | |||||  | |||||   ||||||||| |||||||| ||
seq2  AACATAAAATG-ATTTAGAACCGCTA--GCAGCACTAT-GATAATAG-AA  89

seq1  GAC-TATGTAAAAATGAAGAGAAGGATTAACACATTCAAGGAGCCGTAGA  149
      ||| ||||| |||||| |||| |||||||||||| |||| ||||||||||
seq2  GACTTATGT-AAAATG-AGAG-AGGATTAACACA-TCAA-GAGCCGTAGA  134

seq1  AGATAAGTAAACGCTAGGACAATTTATCAAAAAAGTCCAAGAAAACACCA  199
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGATAAGTAAACGCTA-GACAATTTATCAAAAAAGTCCAAGAAAACACCA  183

seq1  AAAACAAAGAAACAATGAAGTGATAAGAATACAGACAAAATTGTGAATAA  249
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAAACAAAGAAACAATGAAGTGATAAGAATACAGACAAAAATGTGAATAA  233

seq1  CTCTGAATATCAACAGCCACAACTTCCCATTTTAAAAAAAATAGACTATC  299
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  CTCTGAATATCAACAGCCACAACTTCCCCATTTAAAAAAAATAGACTATC  283

seq1  AGACT-GGGTTACAAAATGGTTTCGTTTTAGTGCAAATAGATAGAGAAAG  348
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGGGTTACAAAATGGTTTCGTTTTAGTGCAAATAGATAGAGAAAG  333

seq1  GTGTTCTGGGCAAGTATAATTAGGAAACAGTACTTAGTATTCTAATATCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTGGGCAAGTATAATTAGGAAACAGTACTTAGTATTCTAATATCT  383

seq1  GACAACATGCAGTTCAAAGTAAAACTATTCAGAAAAGGAAAGGAAAAAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACATGCAGTTCAAAGTAAAACTATTCAGAAAAGGAAAGGAAAAAAA  433

seq1  AAACAAAACCCAGCGGGAAACAGAATCCCAGTCACATTAAAAGGAGAGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACCCAGCGGGAAACAGAATCCCAGTCACATTAAAAGGAGAGGT  483

seq1  GGGAGAATCCTTGGAATTAAATGTGTAAGGAGAGATAGGACTGAGGAGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAATCCTTGGAATTAAATGTGTAAGGAGAGATAGGACTGAGGAGAG  533

seq1  GTTGGAGGTAGGTTAGTCCAAACTAATAAATCTATGAAAAACAAACAAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGGTAGGTTAGTCCAAACTAATAAATCTATGAAAAACAAACAAAC  583

seq1  AAACAAACAAACAAACAAAATACCACTATTTTGTAAGCCAACTTTAAGAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAACAAAATACCACTATTTTGTAAGCCAACTTTAAGAT  633

seq1  CTTATTTTTAAAAGAAGAATTTGAATATAAGAACCCTGAACGGGTAGCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTTAAAAGAAGAATTTGAATATAAGAACCCTGAACGGGTAGCTA  683

seq1  CTACCCAGAAGATGTGGGTTATTAAAAACAAAAAAACAAAAACAAACAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCAGAAGATGTGGGTTATTAAAAACAAAAAAACAAAAACAAACAAA  733

seq1  CAAACAAAAAACCCCTCATTGTTGGGTTCAGAATACATCTTTCTGAGTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAAAACCCCTCATTGTTGGGTTCAGAATACATCTTTCTGAGTTA  783

seq1  CTGGTAAGGGACGCCCAGGAAGTACCCCACACAACACAAGCTTTTTCCCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAAGGGACGCCCAGGAAGTACCCCACACAACACAAGCTTTTTCCCA  833

seq1  ATGGTTCTGATTGACTATCATAACTAGATGACAAGGCCCTATTAATGAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCTGATTGACTATCATAACTAGATGACAAGGCCCTATTAATGAAA  883

seq1  CCATTCCTCGCTTTGGGTACAGAAGTCTCAGTGGATTCCCCAGACCCTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCTCGCTTTGGGTACAGAAGTCTCAGTGGATTCCCCAGACCCTCT  933

seq1  ACCTGCAGCCTATTCTTATACAATGCAGAAGGTACACTGCAGCCTGCAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCAGCCTATTCTTATACAATGCAGAAGGTACACTGCAGCCTGCAGG  983

seq1  AGAAGAAAACAACTGTCTTATCCAGAGCTGGAGCCTATATGCACACACCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAACAACTGTCTTATCCAGAGCTGGAGCCTATATGCACACACCA  1033

seq1  ACTGTCAGGCAACACGTGTCCCCTGGTGCAATAGTGGCACGTTGTTTATG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAGGCAACACGTGTCCCCTGGTGCAATAGTGGCACGTTGTTTATG  1083

seq1  GGTAACCTACCTTGAGGCCTGCTTCAAAGGAGGAATTC  1136
      ||||||||||||||||||||||||||||||||||||||
seq2  GGTAACCTACCTTGAGGCCTGCTTCAAAGGAGGAATTC  1121


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