BAC Information

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BAC

Clone NameB6Ng01-197L14
Chromosome9 (Build37)
Map Location 77,412,451 - 77,572,269
singlet/doubletdoublet
Overlap geneKlhl31
Upstream geneTinag, LOC436082, 2310046A06Rik, 5730403I07Rik, Lrrc1
Downstream geneGclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197L14.bB6Ng01-197L14.g
ACCGA019514GA019515
length1,077824
definitionB6Ng01-197L14.b B6Ng01-197L14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,571,188 - 77,572,269)(77,412,451 - 77,413,130)
sequence
gaattcaggattccaattaatggttgacttttggacaccctgaaagggca
gggcaggttgactcagccattcagatggttcctttttctcccgagagcct
aatcaaacaaaaacaaactctgaagaaatatgatcattaccaaaggcagc
gggttcctcctgcactccaaatagcacaggtgattgtctcgaaaagtacc
tgcttttccacaaacaattttgtggaaggaaagatcacagttggaaaggc
tagatgaggctgcattggaaatttatttatttcttttatgtggaaaggta
tatagttgcttgtaacagttccctttgccctaattccacccacttttccc
tcaaaaagttactagaaccaagaagactacttttcaaagtctacatgtgc
agctattactggtggtccagactgagcaaatgaagggtcaggggaatttc
tttttttcaaatattcatttgtagtcacacatttctaaacatgtagaaat
acacatctattttggtgtcagccaatatgtctacaaaggattgaggtgca
atttgagagatatgtagggctggaagaaaagtcatatatctaatgattgg
tgagtattagggacataatgatttatggttggtgagtattagggacactt
tgggctcatctggcaccaacaaccattgttactggagtcattagagtcaa
acccttgaacttataagtcctattgagtcacttaatcacttggccactgg
ctctcgctaggccaattcaacagcagtagtgaaaaagcaacaaaagatgt
attcagtgtggccacactgggggagaagaacaaggagtgaccattgctgg
ccctagtctagtttcagggacctaacatgggggtttgagtttaaaaggtt
gcatatctaagcagtcttaccaggattgtagcccatcattatatctgcct
ccagtacctcctgtgaggtggtcttatgacgagttgtcgaatcattccca
agaaacatgctcctgatggtactaggccccagcctttccttctcttagct
tgaaacctcgtggaattccaacctctt
gaattctttgtttagctctgtgccccatttttaatggggttatttggttt
tctggagtcccttcttagaactgggaacaaaacacccatggaatgagtta
cagagacaaagtttggagctgagacaaaaggatggaccatccagacactg
ccccactcaggggtccatcccataatcagccaccaaacgcagacactatt
gcatacaccagcaagattttgctgaagggaccctgatatagctgtctctt
gtgaggctaagccaatgcctggcaaatacagaagtggatgctcagagtca
tctattggatggaacacagggcccccaatggaggagctagagaaagtacc
caaggagctgaaggggtctgcaaccctataggtggaacaacaatatgaac
taaccagtacccccagaactcgtgtctctagctgcatatgtagcagaaga
tggcctagtcagccatcattgggaagagaggccccttggtcttgcaaact
ttatatgccccagtacaggggaaacaccaatgccaagaagtgggagtggg
tgggtaggggaacgaggcggggtataggggactttggggatagcatttga
aatgtaaatgaagtaaatgcctaataaaaattggggggaaaaaaaggaaa
cagacaaaggcaaagaagtgttgactttccccaagacatcctaactcctc
gactactgttcctcaatgatttcttctcgtgggaaaaataccagatggag
acgtttttaaagttttctgggtaaaagtggtcagttacatccaaaatgtt
acaaggggagtgggatgggatcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_77571188_77572269
seq2: B6Ng01-197L14.b_43_1119 (reverse)

seq1  AAGAGGTTGGAATTCCCCCGAGTTTCAAGCTAGGAGAAAGAAAAGGCTGG  50
      |||||||||||||||| |   ||||||||||| ||| ||| |||||||||
seq2  AAGAGGTTGGAATTCCACGAGGTTTCAAGCTAAGAG-AAGGAAAGGCTGG  49

seq1  GGCCCTAGTACCAACCAGGAGCATGTTTCTTGGGGAATGATTTCGGACAA  100
      || ||||||||| | |||||||||||||||| ||||||||||   |||||
seq2  GG-CCTAGTACC-ATCAGGAGCATGTTTCTT-GGGAATGATT--CGACAA  94

seq1  CTCGTCATAAGACCACCTCACAGGAGGTACTGGA-GCAGATAATAATGAT  149
      |||||||||||||||||||||||||||||||||| |||||| ||||||||
seq2  CTCGTCATAAGACCACCTCACAGGAGGTACTGGAGGCAGAT-ATAATGAT  143

seq1  GGGCTAC-ATCCTGGTAAGAACTGCTTAGATATGCAACCCTTTAAACTCA  198
      ||||||| ||||||||||| ||||||||||||||||||| ||||||||||
seq2  GGGCTACAATCCTGGTAAG-ACTGCTTAGATATGCAACCTTTTAAACTCA  192

seq1  AA-CCCCATGTTAGGTCCCTGAAACTAGACTAGGGCCAGCAATGGTCACT  247
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCATGTTAGGTCCCTGAAACTAGACTAGGGCCAGCAATGGTCACT  242

seq1  CCTTGTTCTTCTCCCCCAGTGTGGCCACACTGAATACATCTTTTGTTGCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTCTTCTCCCCCAGTGTGGCCACACTGAATACATCTTTTGTTGCT  292

seq1  TTTTCACTACTGCTGTTGAATTGGCCTAGCGAGAGCCAGTGGCCAAGTGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTACTGCTGTTGAATTGGCCTAGCGAGAGCCAGTGGCCAAGTGA  342

seq1  TTAAGTGACTCAATAGGACTTATAAGTTCAAGGGTTTGACTCTAATGACT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGACTCAATAGGACTTATAAGTTCAAGGGTTTGACTCTAATGACT  392

seq1  CCAGTAACAATGGTTGTTGGTGCCAGATGAGCCCAAAGTGTCCCTAATAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAACAATGGTTGTTGGTGCCAGATGAGCCCAAAGTGTCCCTAATAC  442

seq1  TCACCAACCATAAATCATTATGTCCCTAATACTCACCAATCATTAGATAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAACCATAAATCATTATGTCCCTAATACTCACCAATCATTAGATAT  492

seq1  ATGACTTTTCTTCCAGCCCTACATATCTCTCAAATTGCACCTCAATCCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTTTCTTCCAGCCCTACATATCTCTCAAATTGCACCTCAATCCTT  542

seq1  TGTAGACATATTGGCTGACACCAAAATAGATGTGTATTTCTACATGTTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACATATTGGCTGACACCAAAATAGATGTGTATTTCTACATGTTTA  592

seq1  GAAATGTGTGACTACAAATGAATATTTGAAAAAAAGAAATTCCCCTGACC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTGTGACTACAAATGAATATTTGAAAAAAAGAAATTCCCCTGACC  642

seq1  CTTCATTTGCTCAGTCTGGACCACCAGTAATAGCTGCACATGTAGACTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTTGCTCAGTCTGGACCACCAGTAATAGCTGCACATGTAGACTTT  692

seq1  GAAAAGTAGTCTTCTTGGTTCTAGTAACTTTTTGAGGGAAAAGTGGGTGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTAGTCTTCTTGGTTCTAGTAACTTTTTGAGGGAAAAGTGGGTGG  742

seq1  AATTAGGGCAAAGGGAACTGTTACAAGCAACTATATACCTTTCCACATAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGGCAAAGGGAACTGTTACAAGCAACTATATACCTTTCCACATAA  792

seq1  AAGAAATAAATAAATTTCCAATGCAGCCTCATCTAGCCTTTCCAACTGTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATAAATAAATTTCCAATGCAGCCTCATCTAGCCTTTCCAACTGTG  842

seq1  ATCTTTCCTTCCACAAAATTGTTTGTGGAAAAGCAGGTACTTTTCGAGAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCCTTCCACAAAATTGTTTGTGGAAAAGCAGGTACTTTTCGAGAC  892

seq1  AATCACCTGTGCTATTTGGAGTGCAGGAGGAACCCGCTGCCTTTGGTAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACCTGTGCTATTTGGAGTGCAGGAGGAACCCGCTGCCTTTGGTAAT  942

seq1  GATCATATTTCTTCAGAGTTTGTTTTTGTTTGATTAGGCTCTCGGGAGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATATTTCTTCAGAGTTTGTTTTTGTTTGATTAGGCTCTCGGGAGAA  992

seq1  AAAGGAACCATCTGAATGGCTGAGTCAACCTGCCCTGCCCTTTCAGGGTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAACCATCTGAATGGCTGAGTCAACCTGCCCTGCCCTTTCAGGGTG  1042

seq1  TCCAAAAGTCAACCATTAATTGGAATCCTGAATTC  1082
      |||||||||||||||||||||||||||||||||||
seq2  TCCAAAAGTCAACCATTAATTGGAATCCTGAATTC  1077

seq1: chr9_77412451_77413130
seq2: B6Ng01-197L14.g_199_889

seq1  GGACCATCCAGACACTGCCCCACTCAGGGGTCCATCCCATAATCAGCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCATCCAGACACTGCCCCACTCAGGGGTCCATCCCATAATCAGCCAC  50

seq1  CAAACGCAGACACTATTGCATACACCAGCAAGATTTTGCTGAAGGGACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACGCAGACACTATTGCATACACCAGCAAGATTTTGCTGAAGGGACCC  100

seq1  TGATATAGCTGTCTCTTGTGAGGCTAAGCCAATGCCTGGCAAATACAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAGCTGTCTCTTGTGAGGCTAAGCCAATGCCTGGCAAATACAGAA  150

seq1  GTGGATGCTCAGAGTCATCTATTGGATGGAACACAGGGCCCCCAATGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGCTCAGAGTCATCTATTGGATGGAACACAGGGCCCCCAATGGAG  200

seq1  GAGCTAGAGAAAGTACCCAAGGAGCTGAAGGGGTCTGCAACCCTATAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGAGAAAGTACCCAAGGAGCTGAAGGGGTCTGCAACCCTATAGGT  250

seq1  GGAACAACAATATGAACTAACCAGTACCCCCAGAACTCGTGTCTCTAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAACAATATGAACTAACCAGTACCCCCAGAACTCGTGTCTCTAGCT  300

seq1  GCATATGTAGCAGAAGATGGCCTAGTCAGCCATCATTGGGAAGAGAGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGTAGCAGAAGATGGCCTAGTCAGCCATCATTGGGAAGAGAGGCC  350

seq1  CCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGAAACACCAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGAAACACCAATGC  400

seq1  CAAGAAGTGGGAGTGGGTGGGTAGGGGAACGAGGCGGGGTATAGGGGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGTGGGAGTGGGTGGGTAGGGGAACGAGGCGGGGTATAGGGGACT  450

seq1  TTGGGGATAGCATTTGAAATGTAAATGAAGTAAATGCCTAATAAAAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGATAGCATTTGAAATGTAAATGAAGTAAATGCCTAATAAAAATTG  500

seq1  GGGGG-AAAAAAGGAAACAGACAAAGGCAAAGAAGTG-TGAC-TTCCCCA  547
      ||||| ||||||||||||||||||||||||||||||| |||| |||||||
seq2  GGGGGAAAAAAAGGAAACAGACAAAGGCAAAGAAGTGTTGACTTTCCCCA  550

seq1  AGACATCCTAACTCCTCGACTACTG-TCCTCAATGATT--CTCACGTGGG  594
      ||||||||||||||||||||||||| ||||||||||||   || ||||||
seq2  AGACATCCTAACTCCTCGACTACTGTTCCTCAATGATTTCTTCTCGTGGG  600

seq1  AAAAATACCAGATGGAGACG-TTTTAAAGTTTTCT-GGTAAAAGTGGTCA  642
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  AAAAATACCAGATGGAGACGTTTTTAAAGTTTTCTGGGTAAAAGTGGTCA  650

seq1  GTTACATCCAAAATGTTAC-AGGGGAGT-GGAT-GGATCTA  680
      ||||||||||||||||||| |||||||| |||| |||||||
seq2  GTTACATCCAAAATGTTACAAGGGGAGTGGGATGGGATCTA  691