BAC Information

Click to search

BAC

Clone NameB6Ng01-198B16
Chromosome9 (Build37)
Map Location 96,215,085 - 96,346,784
singlet/doubletdoublet
Overlap geneTfdp2, 1110029I05Rik, Atp1b3, BC043934
Upstream geneChst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik, Xrn1, Gk5
Downstream geneRnf7, LOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216, Acpl2, LOC19034, LOC667226, Spsb4, LOC100040254, Slc25a36, EG622727, LOC384971, Trim42, Clstn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198B16.bB6Ng01-198B16.g
ACCGA019788GA019789
length1,1141,068
definitionB6Ng01-198B16.b B6Ng01-198B16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,215,085 - 96,216,199)(96,345,707 - 96,346,784)
sequence
gaattcaccattaatttcaacatcttgttcagacttgctcttcttaaatg
tattcataatctgctatccttcttagaattgaagtcttttatttttttca
cagctgcctcagcctgtggagaaaaaggctcacaaggctggtgtaaaatt
catgtagccattcattcagttcctcattgctgtgtgggaacggtctatca
actgaccagacagggtcctaaccttaccacatagctccattggtttctgc
acagtaaaacagtttctgtattacaaaagtagtgtaatacagaggctggg
gcgtggcccagtgggtatggacactggctgcacagcctgacctgagtttc
atccgcagaacccacataaaagccatatgggtggtatgcctcttctctct
cagagctcctgcagggagatgaggaggtagaagcagaactggccaatagc
tctcagagcctcagagccactagcctggagaatgcagtgcagcagcagga
accgggagaccctgcttcaacaagcttgaaggccggaaccaactccagag
cccactaacttccacaagcacactttggtatggcttgacatacccacact
cacacagacacacagagacacacatgcccacactcacatagacacacaga
tatacacacatacacacacacacacacacacacacacacacagagctcaa
gggctggcaagatagtttggtgggtttgtgattgcatcagacctgatgat
ctgagtttgacccccagtacctacatctatgaaggaaagagccagccact
taaagttatccttggacttcacactcatgcacagccacacacatacacag
aaatgaaagtaatataatatacgagtgtaagtttaaaagtacaataaaag
cttatttaagcaaagtatattttctgggtatgcattagattttgccatat
gagaatcttttttattttttattttacttttttgggtttttgagacaggt
ttctctgtgtagccctgtctatccttgaactaactctgtaaattagctga
cctcaactcagagatgtgcctgcctctgctctgaagtgcttgagaataaa
gtgtgtgcaccatg
gaattccagggggatctgacaccctcacacagacataacggctggcaaaa
cagcaacacccataaaatcaaagtaaatagattattaaaacaaatgaata
agggctagatggatggctccctggttaagaactctgactgctcttccaga
ggtcctgagttcaattttcagcaatcacatagtggctcacagccatcttt
aatgggatctgatgtcctcttctggtgtgtgtgaaggcagcaacaccata
ctcatattcattttatgaataaataaatcttaaaacagacaaacaaaact
caggttaagtaggtgataagattagaatattattgtgccagtctggtttg
atataaacactaaccaaaggcttaactgacgctccaagaagaggaggccc
ccgaccacagtgctgaggtctcagatccagccacccatacacagactaga
cacaattaaacgtggccatggtcatcttgacactcactctttgtttctcc
tctatgtttgttttgtttgagaccatgtcttactctgtagctcaggctgg
acaatgattctcctaagtgctctgatcacaggcgggagccaccatgccca
gatgacattcattcttagtatctttgtagtaccactgcctgtgcctggca
gacgtggacatgcacacatgaaactaacacaaattagttttcagtgactc
tggagaaatgtaatcagaagagtggagacaccggagagtacacactgggg
cttttaaaactcagcattctatttagggaacagtgaccttcagattttat
tcaacgtgagtcatacaaccttgctattttgtcaggaatgggagtaaatt
tgggagcaggaatttagcagcttgcctgaagcaaagaactgacttcttat
attcagagggaccatgggaggaagaggggtggccattctgttgctctgaa
gcgccctgtatacaggtacagtgctgaaggtattagtaatgaatgctgca
ggatataaggatattggaagtcctttgacctacttttttcctttgagaac
aggtttctctgtgtagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_96215085_96216199
seq2: B6Ng01-198B16.b_43_1156

seq1  GAATTCACCATTAATTTCAACATCTTGTTCAGACTTGCTCTTCTTAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATTAATTTCAACATCTTGTTCAGACTTGCTCTTCTTAAATG  50

seq1  TATTCATAATCTGCTATCCTTCTTAGAATTGAAGTCTTTTATTTTTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATAATCTGCTATCCTTCTTAGAATTGAAGTCTTTTATTTTTTTCA  100

seq1  CAGCTGCCTCAGCCTGTGGAGAAAAAGGCTCACAAGGCTGGTGTAAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCCTCAGCCTGTGGAGAAAAAGGCTCACAAGGCTGGTGTAAAATT  150

seq1  CATGTAGCCATTCATTCAGTTCCTCATTGCTGTGTGGGAACGGTCTATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGCCATTCATTCAGTTCCTCATTGCTGTGTGGGAACGGTCTATCA  200

seq1  ACTGACCAGACAGGGTCCTAACCTTACCACATAGCTCCATTGGTTTCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCAGACAGGGTCCTAACCTTACCACATAGCTCCATTGGTTTCTGC  250

seq1  ACAGTAAAACAGTTTCTGTATTACAAAAGTAGTGTAATACAGAGGCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAAACAGTTTCTGTATTACAAAAGTAGTGTAATACAGAGGCTGGG  300

seq1  GCGTGGCCCAGTGGGTATGGACACTGGCTGCACAGCCTGACCTGAGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGCCCAGTGGGTATGGACACTGGCTGCACAGCCTGACCTGAGTTTC  350

seq1  ATCCGCAGAACCCACATAAAAGCCATATGGGTGGTATGCCTCTTCTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGCAGAACCCACATAAAAGCCATATGGGTGGTATGCCTCTTCTCTCT  400

seq1  CAGAGCTCCTGCAGGGAGATGAGGAGGTAGAAGCAGAACTGGCCAATAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTCCTGCAGGGAGATGAGGAGGTAGAAGCAGAACTGGCCAATAGC  450

seq1  TCTCAGAGCCTCAGAGCCACTAGCCTGGAGAATGCAGTGCAGCAGCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGCCTCAGAGCCACTAGCCTGGAGAATGCAGTGCAGCAGCAGGA  500

seq1  ACCGGGAGACCCTGCTTCAACAAGCTTGAAGGCCGGAACCAACTCCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGGAGACCCTGCTTCAACAAGCTTGAAGGCCGGAACCAACTCCAGAG  550

seq1  CCCACTAACTTCCACAAGCACACTTTGGTATGGCTTGACATACCCACACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTAACTTCCACAAGCACACTTTGGTATGGCTTGACATACCCACACT  600

seq1  CACACAGACACACAGAGACACACATGCCCACACTCACATAGACACACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGACACACAGAGACACACATGCCCACACTCACATAGACACACAGA  650

seq1  TATACACACATACACACACACACACACACACACACACACACAGAGCTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACACATACACACACACACACACACACACACACACACAGAGCTCAA  700

seq1  GGGCTGGCAAGATAGTTTGGTGGGTTTGTGATTGCATCAGACCTGATGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGCAAGATAGTTTGGTGGGTTTGTGATTGCATCAGACCTGATGAT  750

seq1  CTGAGTTTGACCCCCAGTACCTACATCTATGAAGGAAAGAGCCAGCCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTGACCCCCAGTACCTACATCTATGAAGGAAAGAGCCAGCCACT  800

seq1  TAAAGTTATCCTTGGACTTCACACTCATGCACAGCCACACACATACACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTATCCTTGGACTTCACACTCATGCACAGCCACACACATACACAG  850

seq1  AAATGAAAGTAATATAATATACGAGTGTAAGTTTAAAAGTACAATAAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAGTAATATAATATACGAGTGTAAGTTTAAAAGTACAATAAAAG  900

seq1  CTTATTTAAGCAAAGTATATTTTCTGGGTATGCATTAGATTTTGCCATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTAAGCAAAGTATATTTTCTGGGTATGCATTAGATTTTGCCATAT  950

seq1  GAGAATCTTTTT--ATTTTTATTTTACTTTTT--GGTTTTTGAGACAGGG  996
      ||||||||||||   |||||||||||||||||  ||||||||||||| ||
seq2  GAGAATCTTTTTTATTTTTTATTTTACTTTTTTGGGTTTTTGAGACA-GG  999

seq1  TTTCTCTGTGTAGCCCTGTCTATCCTGGAACTAACTCTGTAAATTAGGCT  1046
      |||||||||||||||||||||||||| ||||||||||||||||||| |||
seq2  TTTCTCTGTGTAGCCCTGTCTATCCTTGAACTAACTCTGTAAATTA-GCT  1048

seq1  GACCTCAAACTCAGAGATGTGCCTGCCTCTGCCTCTGAAGTGC-TGAGAT  1095
      |||||| |||||||||||||||||||||||| ||||||||||| ||||| 
seq2  GACCTC-AACTCAGAGATGTGCCTGCCTCTG-CTCTGAAGTGCTTGAGAA  1096

seq1  TAAAGGTGTGTGCCACCATG  1115
      |||| ||||||| |||||||
seq2  TAAA-GTGTGTG-CACCATG  1114

seq1: chr9_96345707_96346784
seq2: B6Ng01-198B16.g_63_1130 (reverse)

seq1  GGCTACACAGAGAAACCCTGTCTCAAAGGAAAAAAAAAGTAGGTCAAAGG  50
      |||||||||||||||||   |||||||||   |||||||||||||||| |
seq2  GGCTACACAGAGAAACCTGTTCTCAAAGG---AAAAAAGTAGGTCAAA-G  46

seq1  GACTTTCAATATCCCTTAATATCCCTTGCAAGCATTCATTTACTAATACC  100
      ||||| ||||||||  | ||||||  ||| |||||||| |||||||||||
seq2  GACTTCCAATATCC--TTATATCC--TGC-AGCATTCA-TTACTAATACC  90

seq1  TTCAGCACTGTACCTTGTATAACAGGCGCTTCAGAGCAAACAGAATGGCC  150
      |||||||||||||| ||||||   ||||||||||||| ||||||||||||
seq2  TTCAGCACTGTACC-TGTATACAGGGCGCTTCAGAGC-AACAGAATGGCC  138

seq1  A-CCCTCTTCCTCCCATGGTCCCTCTGAATATAAGAAGTCAGTTCTTTGC  199
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTCTTCCTCCCATGGTCCCTCTGAATATAAGAAGTCAGTTCTTTGC  188

seq1  TTCAGGCAAGCTGCTAAATTCCTGCT-CCAAATTTACTCCCATTCCTGAC  248
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTCAGGCAAGCTGCTAAATTCCTGCTCCCAAATTTACTCCCATTCCTGAC  238

seq1  AAAATAGCAAGGTTGTATGACTCACGTTGAATAAAATCTGAAGGTCACTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGCAAGGTTGTATGACTCACGTTGAATAAAATCTGAAGGTCACTG  288

seq1  TTCCCTAAATAGAATGCTGAGTTTTAAAAGCCCCAGTGTGTACTCTCCGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAAATAGAATGCTGAGTTTTAAAAGCCCCAGTGTGTACTCTCCGG  338

seq1  TGTCTCCACTCTTCTGATTACATTTCTCCAGAGTCACTGAAAACTAATTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCACTCTTCTGATTACATTTCTCCAGAGTCACTGAAAACTAATTT  388

seq1  GTGTTAGTTTCATGTGTGCATGTCCACGTCTGCCAGGCACAGGCAGTGGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGTTTCATGTGTGCATGTCCACGTCTGCCAGGCACAGGCAGTGGT  438

seq1  ACTACAAAGATACTAAGAATGAATGTCATCTGGGCATGGTGGCTCCCGCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAAAGATACTAAGAATGAATGTCATCTGGGCATGGTGGCTCCCGCC  488

seq1  TGTGATCAGAGCACTTAGGAGAATCATTGTCCAGCCTGAGCTACAGAGTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCAGAGCACTTAGGAGAATCATTGTCCAGCCTGAGCTACAGAGTA  538

seq1  AGACATGGTCTCAAACAAAACAAACATAGAGGAGAAACAAAGAGTGAGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGGTCTCAAACAAAACAAACATAGAGGAGAAACAAAGAGTGAGTG  588

seq1  TCAAGATGACCATGGCCACGTTTAATTGTGTCTAGTCTGTGTATGGGTGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATGACCATGGCCACGTTTAATTGTGTCTAGTCTGTGTATGGGTGG  638

seq1  CTGGATCTGAGACCTCAGCACTGTGGTCGGGGGCCTCCTCTTCTTGGAGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATCTGAGACCTCAGCACTGTGGTCGGGGGCCTCCTCTTCTTGGAGC  688

seq1  GTCAGTTAAGCCTTTGGTTAGTGTTTATATCAAACCAGACTGGCACAATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTAAGCCTTTGGTTAGTGTTTATATCAAACCAGACTGGCACAATA  738

seq1  ATATTCTAATCTTATCACCTACTTAACCTGAGTTTTGTTTGTCTGTTTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTAATCTTATCACCTACTTAACCTGAGTTTTGTTTGTCTGTTTTA  788

seq1  AGATTTATTTATTCATAAAATGAATATGAGTATGGTGTTGCTGCCTTCAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATTTATTCATAAAATGAATATGAGTATGGTGTTGCTGCCTTCAC  838

seq1  ACACACCAGAAGAGGACATCAGATCCCATTAAAGATGGCTGTGAGCCACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCAGAAGAGGACATCAGATCCCATTAAAGATGGCTGTGAGCCACT  888

seq1  ATGTGATTGCTGAAAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATTGCTGAAAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGAGT  938

seq1  TCTTAACCAGGGAGCCATCCATCTAGCCCTTATTCATTTGTTTTAATAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACCAGGGAGCCATCCATCTAGCCCTTATTCATTTGTTTTAATAAT  988

seq1  CTATTTACTTTGATTTTATGGGTGTTGCTGTTTTGCCAGCCGTTATGTCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTACTTTGATTTTATGGGTGTTGCTGTTTTGCCAGCCGTTATGTCT  1038

seq1  GTGTGAGGGTGTCAGATCCCCCTGGAATTC  1078
      ||||||||||||||||||||||||||||||
seq2  GTGTGAGGGTGTCAGATCCCCCTGGAATTC  1068