BAC Information

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BAC

Clone NameB6Ng01-207N06
Chromosome9 (Build37)
Map Location 35,924,554 - 35,925,641
singlet/doubletsinglet
Overlap genenone
Upstream geneDcps, Tirap, Foxred1, Srpr, C030004A17Rik, Rpusd4, EG434394, Cdon, Ddx25, Pus3, EG627480, LOC100042442, Svs7, Gm846, D730048I06Rik, 9230110F15Rik, LOC100041605, 9230113P08Rik
Downstream geneEG546123, LOC100041618, LOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24, LOC627681, Fez1, Pknox2, LOC100042545
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207N06.bB6Ng01-207N06.g
ACCGA026872GA026873
length9601,121
definitionB6Ng01-207N06.b B6Ng01-207N06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccactttttaatggggttatttgatt
ttctgggatccaccttcttgagttcttaatatatatattggatattagtg
ccctatctgatgtaggattggcaaagatcctttcccaatctgttggtggc
ctttttgtcttattgatggtttcttttgccttacagaagctttgcaattt
tatgaggtcccatttgtcgattctcgatcttacagcacaagccattgctg
ttctttctatacaggaagttttcccctgtgcccatatcttcgaggcgttt
ccccactttctcctctattaatttcaatgtctatggtcttatgtggaggt
ctttgatccacttagacttgacctttgaacaaggagataaggatttatca
atttggattcttctacatgataacaaccagttgtgccagcaccatttgtt
gaaaatgctgtcttttttccattgcatagttttagctcccttgtcaaaga
tcaagtgaccataggtgtgtgagttcatttctgggtcttcaattctattc
cattggtctacttctctgttgctataccagtaccgtgcagtttttatgac
aatttctctgtagtaaacttttaggtcagtcatggtgattccaccagagg
ttcttttatcattgagaagagtttttgctatcctaggattttgttattcc
agatgattttgcaaattgcactttctaattcgttgaagaattgagttgga
attttgatggggatttcgttgaatctgtagattgcttttggcaagatagc
catttttatgatattgaccctgcaaatccatgagcatgggagatctttcc
attttctgagatattctttaatttctttcttcagagtacttgaagttctt
atcatacagatctttcacatcctttggttagagtcacgcccaaggtattt
tatgttattt
gaattccactgtgtttataaatatgacattttctttatccatttatctct
tgatatatttctaagctggtacaatgtctgatatgttgtgaacacaaata
ctacaatgataatcatggacatatcagtgtctctgagtagtaacttaaat
ttcttggagaatatgccaaagaataatataactaagtcataagatggttc
tatttctagtttgtaaaggacctccttggtgattttcatagtggttgtgt
aagactacattcctatggtgataaaagtttcattttctcaacatcctggg
cacactctgttctccattgttttcctggtgacaggcattctggctgtggt
gaaacagaatctcaaagcaggttaactttgaatttctctaatggctaaaa
attttgacaacttttcaaaatcttttggaccttatagtttttatctttga
gaagtatctgctcaatttgctagcccattcaagtgaatcatttttgatac
ttaatgcttacccaatggtttattttacgtgttgatgacttttcagcctt
tatgctcttctgtctttgatgactgcttccctttctgcacatgagacctc
tccaacttctagtgtctttcactctctttcttcagtactgtaagattttc
actatagtagtctccctttcctaaggtttgtttataaaatactcatgtat
tttaaaccattataaatatgacattcccccagattgttttctaagttaac
tcatgattgtcatgtacaaaacttggcatgtctctctgcacagcattgct
taaatcttactaattttttgaaagtgtctaagggttctgggagttttcag
ctggagtctctctgagacatcatcaaatacgaatttcattgattgcttta
tttcccgttaatatttcctatttctttcttactgctttcttattgctttt
ggctgagtcattgaccaaatattattcaaataagagtgaagagtggggta
accttggttcctgttagaaataaattgggtttccaggggtttccctgtta
tataatgcttatggaaacattcctaagcatcctaaggttggagtatgtgg
agactgctagtctatttattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_35924554_35925641
seq2: B6Ng01-207N06.g_95_1185 (reverse)

seq1  GAATAAATTAGGACTAGCAGGGTCTCACATACCTCAACCTAAGAAATGCT  50
      ||||||||   |||||||||  || |||||||  |||||| ||  |||||
seq2  GAATAAAT--AGACTAGCAGTCTC-CACATACTCCAACCTTAG-GATGCT  46

seq1  ATAGAGAATATTTTCATAAGCATTATATTAACAGGAAAACCCCTG--AAA  98
       ||| |||| ||| ||||||||||||| ||||||| |||||||||  || 
seq2  -TAG-GAATGTTTCCATAAGCATTATA-TAACAGGGAAACCCCTGGAAAC  93

seq1  CCATTTTTTTTCTAACAGG-ACCAAGTTT--CCCACTCTTCACTCTTATT  145
      ||| ||| ||||||||||| |||||| ||  |||||||||||||||||||
seq2  CCAATTTATTTCTAACAGGAACCAAGGTTACCCCACTCTTCACTCTTATT  143

seq1  TGA--TATATTT-GTCAATGACTCAGCC-AAAGCAATAAGAAAGCAGTAA  191
      |||   |||||| ||||||||||||||| |||||||||||||||||||||
seq2  TGAATAATATTTGGTCAATGACTCAGCCAAAAGCAATAAGAAAGCAGTAA  193

seq1  GAAAGAAATAGG-AATATTAACGGGAAATAAAGCAATCAATG-AATTCGT  239
      |||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  GAAAGAAATAGGAAATATTAACGGGAAATAAAGCAATCAATGAAATTCGT  243

seq1  ATTTGATGATGTCTTCAGAGAGACTCCAGCTGAAAACTCCCAGAACCCTT  289
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATTTGATGATGTC-TCAGAGAGACTCCAGCTGAAAACTCCCAGAACCCTT  292

seq1  AGACACTTTCAAAAAATTAGTAAGATTTAAGCAATGCTGTGCAGAGAGAC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTTTCAAAAAATTAGTAAGATTTAAGCAATGCTGTGCAGAGAGAC  342

seq1  ATGCCAAGTTTTGTACATGACAATCATGAGTTAACTTAGAAAACAATCTG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAAGTTTTGTACATGACAATCATGAGTTAACTTAGAAAACAATCTG  392

seq1  GGGGAATGTCATATTTATAATGGTTTAAAATACATGAGTATTTTATAAAC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATGTCATATTTATAATGGTTTAAAATACATGAGTATTTTATAAAC  442

seq1  AAACCTTAGGAAAGGGAGACTACTATAGTGAAAATCTTACAGTACTGAAG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTAGGAAAGGGAGACTACTATAGTGAAAATCTTACAGTACTGAAG  492

seq1  AAAGAGAGTGAAAGACACTAGAAGTTGGAGAGGTCTCATGTGCAGAAAGG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGTGAAAGACACTAGAAGTTGGAGAGGTCTCATGTGCAGAAAGG  542

seq1  GAAGCAGTCATCAAAGACAGAAGAGCATAAAGGCTGAAAAGTCATCAACA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGTCATCAAAGACAGAAGAGCATAAAGGCTGAAAAGTCATCAACA  592

seq1  CGTAAAATAAACCATTGGGTAAGCATTAAGTATCAAAAATGATTCACTTG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAAATAAACCATTGGGTAAGCATTAAGTATCAAAAATGATTCACTTG  642

seq1  AATGGGCTAGCAAATTGAGCAGATACTTCTCAAAGATAAAAACTATAAGG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGCTAGCAAATTGAGCAGATACTTCTCAAAGATAAAAACTATAAGG  692

seq1  TCCAAAAGATTTTGAAAAGTTGTCAAAATTTTTAGCCATTAGAGAAATTC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAGATTTTGAAAAGTTGTCAAAATTTTTAGCCATTAGAGAAATTC  742

seq1  AAAGTTAACCTGCTTTGAGATTCTGTTTCACCACAGCCAGAATGCCTGTC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAACCTGCTTTGAGATTCTGTTTCACCACAGCCAGAATGCCTGTC  792

seq1  ACCAGGAAAACAATGGAGAACAGAGTGTGCCCAGGATGTTGAGAAAATGA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAAAACAATGGAGAACAGAGTGTGCCCAGGATGTTGAGAAAATGA  842

seq1  AACTTTTATCACCATAGGAATGTAGTCTTACACAACCACTATGAAAATCA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTATCACCATAGGAATGTAGTCTTACACAACCACTATGAAAATCA  892

seq1  CCAAGGAGGTCCTTTACAAACTAGAAATAGAACCATCTTATGACTTAGTT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAGGTCCTTTACAAACTAGAAATAGAACCATCTTATGACTTAGTT  942

seq1  ATATTATTCTTTGGCATATTCTCCAAGAAATTTAAGTTACTACTCAGAGA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATTCTTTGGCATATTCTCCAAGAAATTTAAGTTACTACTCAGAGA  992

seq1  CACTGATATGTCCATGATTATCATTGTAGTATTTGTGTTCACAACATATC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATATGTCCATGATTATCATTGTAGTATTTGTGTTCACAACATATC  1042

seq1  AGACATTGTACCAGCTTAGAAATATATCAAGAGATAAATGGATAAAGAA  1088
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTGTACCAGCTTAGAAATATATCAAGAGATAAATGGATAAAGAA  1091