BAC Information

Click to search

BAC

Clone NameB6Ng01-210A01
Chromosome9 (Build37)
Map Location 112,421,298 - 112,573,164
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC620615, Stac, 4930545L08Rik, Arpp21, LOC100039341, LOC620760, LOC100043800
Downstream geneEG622110, LOC100039391, LOC100043801, LOC100043802, LOC636680, Pdcd6ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210A01.bB6Ng01-210A01.g
ACCGA028461GA028462
length569862
definitionB6Ng01-210A01.b B6Ng01-210A01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,421,298 - 112,421,873)(112,572,214 - 112,573,164)
sequence
agaattgaagaaataattttcattttccaaaattaattttgaaaactgtc
tgcttttgtgttaataaatgatccagaatatgattaacatccaatcaaga
tgatttcagacctaaaatgtcaaacaagataaaaacgtgttctgtaaaaa
agcaaatgcaaaatgtgtaacttagaaaaatccatggccacgagattgta
gatgaacttaaataagtagctctgaaatgaagagaaattagcagtagtag
attgatgtagttatcaataacatattccacaggacatgaaaataagacat
agattttctgaatgaaataacaaatgtttgaatcaatacatatacatgaa
aattttatactttagtaaagatctctattagcatgaggtatgacaatata
gaggtttaatcctggtattcaggcagaggtggaggctgaagcagaggtgg
gggagggttgagcttaggggttagagactggggtgggggtgggcaaaggc
tgaggcagaggcagaacctcctagatagcttggtattatgatgctttcca
gggtgtcgaggatgaccta

gaattctcagtaaaacctagtcataccaacagaaggctatattttcaggc
ctgcatttgaaagttagattttgcaaaataaatgaaccattgttctccct
aaataaatggcaaaaccttcataaagtttttaatgaatctatctatctat
ctatctatctatctatctatctatctatctatctatctatcatctatcta
tctatctatctatctatctatctatctatctatctatctatcactccaga
ggtttagctcttagaacattagacaatttaacaaactgcattttctcttg
tctttcagatctgtctttattcatgtgacagtatgcatgcctctctgtgt
gtatgatcatatatgttaaggttccctgatgagggaatctgatcccctgg
agctgcagttccaggcagttgtgagacatctcacacagtgccaggaactc
ataacctctacaggacacagccttaaccactgagcgatctttccagtcca
acgaaccatagtttgaagattccattgcatgaatttcagtacttagggaa
ataactaatcctgtgtgttgatgcaatctcatctctctctttctatcttc
catcattccttgagtgtcaagtccttatatggataatgagaataattaat
cacaagagactgtcagattattctgctgatatctctgtgtcagcttccag
actcagctctcagatgtctcttgctgtgatctgtacctgtattgacactg
cttctctctcatctgatctgacagtgtgtcgctgagtctactgtagatgt
gacagatgtatatgtatgtactgtctatcatactctgtcatgtctagtac
tgatctgcatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_112421298_112421873
seq2: B6Ng01-210A01.b_32_606

seq1  GAATTCAGAATTGAAGAAATAATTTTCATTTTCCAAAATTAATTTTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAATTGAAGAAATAATTTTCATTTTCCAAAATTAATTTTGAAA  50

seq1  ACTGTCTGCTTTTGTGTTAATAAATGATCCAGAATATGATTAACATCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTGCTTTTGTGTTAATAAATGATCCAGAATATGATTAACATCCAA  100

seq1  TCAAGATGATTTCAGACCTAAAATGTCAAACAAGATAAAAACGTGTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATGATTTCAGACCTAAAATGTCAAACAAGATAAAAACGTGTTCTG  150

seq1  TAAAAAAGCAAATGCAAAATGTGTAACTTAGAAAAATCCATGGCCACGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAGCAAATGCAAAATGTGTAACTTAGAAAAATCCATGGCCACGAG  200

seq1  ATTGTAGATGAACTTAAATAAGTAGCTCTGAAATGAAGAGAAATTAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAGATGAACTTAAATAAGTAGCTCTGAAATGAAGAGAAATTAGCAG  250

seq1  TAGTAGATTGATGTAGTTATCAATAACATATTCCACAGGACATGAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGATTGATGTAGTTATCAATAACATATTCCACAGGACATGAAAATA  300

seq1  AGACATAGATTTTCTGAATGAAATAACAAATGTTTGAATCAATACATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAGATTTTCTGAATGAAATAACAAATGTTTGAATCAATACATATA  350

seq1  CATGAAAATTTTATACTTTAGTAAAGATCTCTATTAGCATGAGGTATGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAATTTTATACTTTAGTAAAGATCTCTATTAGCATGAGGTATGAC  400

seq1  AATATAGAGGTTTAATCCTGGTATTCAGGCAGAGGTGGAGGCTGAAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGAGGTTTAATCCTGGTATTCAGGCAGAGGTGGAGGCTGAAGCAG  450

seq1  AGGTGGGGGAGGGTTGAGCTTAGGGGTTAGAGACTGGGGTGGGGGTGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGGGAGGGTTGAGCTTAGGGGTTAGAGACTGGGGTGGGGGTGGGC  500

seq1  AAAGGCTGAGGCAGAGGCAGAAGCTCCTAGATAGCTTGGTATACATGATG  550
      |||||||||||||||||||||| |||||||||||||||||||  ||||||
seq2  AAAGGCTGAGGCAGAGGCAGAACCTCCTAGATAGCTTGGTAT-TATGATG  549

seq1  CTTTCCAGGGTGTCGAGGATGACCTA  576
      ||||||||||||||||||||||||||
seq2  CTTTCCAGGGTGTCGAGGATGACCTA  575


seq1: chr9_112572214_112573164
seq2: B6Ng01-210A01.g_63_924 (reverse)

seq1  TGATGCAGATCAGTACCTAGGACAGGCAGCAGAGTAATGATAGAAACAGT  50
      ||||||||||||||| ||| |||| |   |||||| |||||||  |||||
seq2  TGATGCAGATCAGTA-CTA-GACATG--ACAGAGT-ATGATAG--ACAGT  43

seq1  AACAATACATATTACAATCTTGTTCACAATCTACCAGTAAAGACTTTCAG  100
      |   ||||||| ||| ||||   |||| ||||| ||||  ||||  ||||
seq2  A--CATACATA-TAC-ATCT--GTCAC-ATCTA-CAGT--AGAC--TCAG  81

seq1  CGACACACTTGTCAGGATCCAGATTGAGAGAAGAAACCCCAAGTGGTCAA  150
      |||||||| ||||| ||| |||| |||||| |||| |    ||| ||| |
seq2  CGACACAC-TGTCA-GAT-CAGA-TGAGAG-AGAAGC----AGT-GTC-A  120

seq1  ATACCAGGGGTTAACAGGAATTCCACAGCCAAAGGAGGCCATTCTGAGGA  200
      ||| ||||     ||||  ||  ||||||   | ||| |   ||||| ||
seq2  ATA-CAGG----TACAG--AT--CACAGC---AAGAGAC--ATCTGA-GA  155

seq1  GCTGGAGGTCTGGGAAGCCTGAACAACAGAGATATCAAGCAGAATAAATT  250
      ||||   |||| ||||| ||||   ||||||||||| ||||||||||  |
seq2  GCTG--AGTCT-GGAAG-CTGA--CACAGAGATATC-AGCAGAATAA--T  196

seq1  CTGACAGTCTTCTTGTGATTAATTATTCTCATTTATCCATATAAAGGGAC  300
      ||||||||| ||||||||||||||||||||| ||||||||||||  ||||
seq2  CTGACAGTC-TCTTGTGATTAATTATTCTCA-TTATCCATATAA--GGAC  242

seq1  TTGAACACCTCAAGGGGAATGATTTGGAAAGATAAGAAAAAGAGAAGAGA  350
      ||| ||| |||||  ||||||||   | |||||   | |||||| |||||
seq2  TTG-ACA-CTCAA--GGAATGAT---GGAAGAT---AGAAAGAG-AGAGA  281

seq1  TGAAGAATTTTGCATCAAACACACAGGGATTTTAGTTTATTTTTCCCTAA  400
      || |||   ||||||| ||||||||||    |||||   | |||||||||
seq2  TG-AGA---TTGCATC-AACACACAGG---ATTAGT---TATTTCCCTAA  320

seq1  GTAACTGAAAAATTTTCATGCAAATGGAATCTTCAAAAACTATGGTTCGT  450
      || |||||||    ||||||| ||||||||||||  ||||||||||||||
seq2  GT-ACTGAAA----TTCATGC-AATGGAATCTTC--AAACTATGGTTCGT  362

seq1  TGGGACTGGAAAGATCGCTCAGTGGTTAAGGCTGTGTCCTGTAGAGGTTA  500
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-GGACTGGAAAGATCGCTCAGTGGTTAAGGCTGTGTCCTGTAGAGGTTA  411

seq1  TGAGTTCCTGGCACTGTGTGAGATGTCTCACAACTGCCTGGAACTGCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCTGGCACTGTGTGAGATGTCTCACAACTGCCTGGAACTGCAGC  461

seq1  TCCAGGGGATCAGATTCCCTCATCAGGGAACCTTAACATATATGATCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGGATCAGATTCCCTCATCAGGGAACCTTAACATATATGATCATA  511

seq1  CACACAGAGAGGCATGCATACTGTCACATGAATAAAGACAGATCTGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGAGAGGCATGCATACTGTCACATGAATAAAGACAGATCTGAAAG  561

seq1  ACAAGAGAAAATGCAGTTTGTTAAATTGTCTAATGTTCTAAGAGCTAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGAAAATGCAGTTTGTTAAATTGTCTAATGTTCTAAGAGCTAAAC  611

seq1  CTCTGGAGTGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAGTGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG  661

seq1  ATAGATAGATGATAGATAGATAGATAGATAGATAGATAGATAGATAGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGATGATAGATAGATAGATAGATAGATAGATAGATAGATAGATA  711

seq1  GATAGATAGATAGATTCATTAAAAACTTTATGAAGGTTTTGCCATTTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAGATAGATTCATTAAAAACTTTATGAAGGTTTTGCCATTTATT  761

seq1  TAGGGAGAACAATGGTTCATTTATTTTGCAAAATCTAACTTTCAAATGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGAACAATGGTTCATTTATTTTGCAAAATCTAACTTTCAAATGCA  811

seq1  GGCCTGAAAATATAGCCTTCTGTTGGTATGACTAGGTTTTACTGAGAATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGAAAATATAGCCTTCTGTTGGTATGACTAGGTTTTACTGAGAATT  861

seq1  C  951
      |
seq2  C  862


| Home | SequenceCutter | Blast | Download |