BAC Information

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BAC

Clone NameB6Ng01-212F04
Chromosome9 (Build37)3 (Build37)
Map Location 33,026,881 - 33,027,16259,247,701 - 59,248,837
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGrit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212F04.bB6Ng01-212F04.g
ACCGA030149GA030150
length7201,121
definitionB6Ng01-212F04.b B6Ng01-212F04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(33,026,881 - 33,027,162)(59,247,701 - 59,248,837)
sequence
gaattcagaacttttcagctggggaacgagagtatcagtgagtacagctt
tacgaggtaagtctgatcttgaactttctaaggaaattcaagacagtcta
tcagaagtaaagtggaatatgtttggccttgaattttttctggtgttagg
agcccttttgttccttttcacatgttatcaagtggtgccgaaagaagaat
caggacggaataaactgctgttagaaggactggtggtcgcatcgttcttg
ctggtcgagagcgggcgcgacaattggtggcccgtacggggaaccgactc
ccccaccgagttcagaactttcagcagtcagtggttgccggcaggcaggg
taagttcacggtgagtgaaatttgcgaccccaggagtttgggaaggacct
cggataaaatagaggtgagcataaagttgccaggaagtaggcacaaagta
acccaggagtttgggaaggacctcggataaaatagaggggaatataaagt
tgccaggaagcaggcacaaagtaacgatacgttcccggttttgggataag
ttaaggttcccggtttcaggacagattaaggaactatgataacctcagtg
tagtgatcaatagatccttgctgtgtagttatgcttttttctcccattga
ccctttgtgggtaggtctgatagttttggtcttgtttgttctgatatatg
gactctgttactgtttgaat
gaattctttatccagtacttcatctgatgtactccttagccctcactgtt
ggattattcattttgttcaaaagtcatattgcttcagtttttcatttctt
gtttttagtgtgtgtgttaagatttgcatattttgtattaagtcattaga
tgattgaaaacaataagccacctttattctttcagtaggactttattctt
ttcaacaaggactaggttatagtgtaactgagggcctgttttcttctacc
aggctgatacccatggtatcagacttgatcccaagtactccctgagacta
gaatactgtcagaaacaaaaattattatcatagggtaagctcaagataaa
aataaaatggtagaaactaaaaggcagtgattttatgtggtcattaatat
attatctagtgtgctttacttatgaatggaaagaaaaatggaatggaaag
aaagtaaaagtggttatatttaatattggttttatagccaagaaatagag
ggggaacacaaagggcaaaggacacagcaaaaggcgtttttaatggaggt
gaccaaaaggggagataaagacctaggaataagtaacatcaccagaagtc
tgggccatggacttgcaaacttgcctaggccatacttttttttttttctt
ctgagaaggaaattaaaagggaaagaatagggagagagaacaagagagag
aaaagcagaggtgcaggacaggggtgagcagcagggagctggcatgatag
actcatcttgggcatgacagaggattaagtgtgaagaggatagagctaga
tgagggtagagaggaggcaagctgtctcacctgattcctggtttcagtct
ctagttttgggcatgccttccttagttcctagaggtctctcttacttttg
ggcctttccctttatgatgtcaggtccaccagtgctggacaccatccctg
gtagtcatgccctatctctggtagacctatcttcctttgagagtgctttc
tgtcagtgggtacactacatagatactgtcatacttctgaacaatcttca
gagtcttattggtgatgcaggtgagacacttggcaatctttttattatca
ggtcagcatagttgccctagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_33026881_33027162
seq2: B6Ng01-212F04.b_43_228 (reverse)

seq1  ACCACTTGATAACATGTGAAAAGGAACAAAAAGGCTCCTAACACTAGAGA  50
      ||||||||||||||||||||||||||||||| |||||||||||| ||| |
seq2  ACCACTTGATAACATGTGAAAAGGAACAAAAGGGCTCCTAACACCAGAAA  50

seq1  AAGTTCAAGGCCAAACATACCTTGTAAAGCTATTTCCCACTTTACTTCTG  100
      || ||||||||||||||||               | ||||||||||||||
seq2  AAATTCAAGGCCAAACATA---------------TTCCACTTTACTTCTG  85

seq1  ATAGACTGTCTTGAATTTCGTTAGAAAGTTCAAGACCAGACTTACCTTGT  150
      ||||||||||||||||||| ||||||||||||||| ||||||||||| ||
seq2  ATAGACTGTCTTGAATTTCCTTAGAAAGTTCAAGATCAGACTTACCTCGT  135

seq1  AAAGCTATACTTACTGGTACCCCTATTCCCCAGCTGAAGAGTTCTGAATT  200
      |||||| |||| |||| ||| |   ||||||||||||| |||||||||||
seq2  AAAGCTGTACTCACTGATACTCTCGTTCCCCAGCTGAAAAGTTCTGAATT  185

seq1  CACGCAGTTGAATCCTTCTCAACAGTCTGTTTTACGGGAACACTTCATTA  250
      |                                                 
seq2  C-------------------------------------------------  186

seq1  CCACCGTTCCCCAGCTGAAGAGTTCTGAATTC  282
                                      
seq2  --------------------------------  186

seq1: chr3_59247701_59248837
seq2: B6Ng01-212F04.g_66_1186

seq1  GAATTCTTTATCCAGTACTTCATCTGATGTACTCCTTAGCCCTCACTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATCCAGTACTTCATCTGATGTACTCCTTAGCCCTCACTGTT  50

seq1  GGATTATTCATTTTGTTCAAAAGTCATATTGCTTCAGTTTTTCATTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTATTCATTTTGTTCAAAAGTCATATTGCTTCAGTTTTTCATTTCTT  100

seq1  GTTTTTAGTGTGTGTGTTAAGATTTGCATATTTTGTATTAAGTCATTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAGTGTGTGTGTTAAGATTTGCATATTTTGTATTAAGTCATTAGA  150

seq1  TGATTGAAAACAATAAGCCACCTTTATTCTTTCAGTAGGACTTTATTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGAAAACAATAAGCCACCTTTATTCTTTCAGTAGGACTTTATTCTT  200

seq1  TTCAACAAGGACTAGGTTATAGTGTAACTGAGGGCCTGTTTTCTTCTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAAGGACTAGGTTATAGTGTAACTGAGGGCCTGTTTTCTTCTACC  250

seq1  AGGCTGATACCCATGGTATCAGACTTGATCCCAAGTACTCCCTGAGACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGATACCCATGGTATCAGACTTGATCCCAAGTACTCCCTGAGACTA  300

seq1  GAATACTGTCAGAAACAAAAATTATTATCATAGGGTAAGCTCAAGATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTGTCAGAAACAAAAATTATTATCATAGGGTAAGCTCAAGATAAA  350

seq1  AATAAAATGGTAGAAACTAAAAGGCAGTGATTTTATGTGGTCATTAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATGGTAGAAACTAAAAGGCAGTGATTTTATGTGGTCATTAATAT  400

seq1  ATTATCTAGTGTGCTTTACTTATGAATGGAAAGAAAAATGGAATGGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTAGTGTGCTTTACTTATGAATGGAAAGAAAAATGGAATGGAAAG  450

seq1  AAAGTAAAAGTGGTTATATTTAATATTGGTTTTATAGCCAAGAAATAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAAAGTGGTTATATTTAATATTGGTTTTATAGCCAAGAAATAGAG  500

seq1  GGGGAACACAAAGGGCAAAGGACACAGCAAAAGGCGTTTTTAATGGAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAACACAAAGGGCAAAGGACACAGCAAAAGGCGTTTTTAATGGAGGT  550

seq1  GACCAAAAGGGGAGATAAAGACCTAGGAATAAGTAACATCACCAGAAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAAAGGGGAGATAAAGACCTAGGAATAAGTAACATCACCAGAAGTC  600

seq1  TGGGCCATGGACTTGCAAACTTGCCTAGGCCATACTTTTTTTTTTTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCATGGACTTGCAAACTTGCCTAGGCCATACTTTTTTTTTTTTCTT  650

seq1  CTGAGAAGGAAATTAAAAGGGAAAGAATAGGGAGAGAGAACAAGAGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGGAAATTAAAAGGGAAAGAATAGGGAGAGAGAACAAGAGAGAG  700

seq1  AAAAGCAGAGGTGCAGGACAGGGGTGAGCAGCAGGGAGCTGGCATGATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGAGGTGCAGGACAGGGGTGAGCAGCAGGGAGCTGGCATGATAG  750

seq1  ACTCATCTTGGGCATGACAGAGGATTAAGTGTGAAGAGGATAGAGCTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATCTTGGGCATGACAGAGGATTAAGTGTGAAGAGGATAGAGCTAGA  800

seq1  TGAGGGTAGAGAGGAGGCAAGCTGTCTCACCTGATTCCTGGTTTCAGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTAGAGAGGAGGCAAGCTGTCTCACCTGATTCCTGGTTTCAGTCT  850

seq1  CTAGTTTTTGGCATGCCTTCCTTAGTTCCTAGAGGTCTCTCTTACTTTTG  900
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTTGGGCATGCCTTCCTTAGTTCCTAGAGGTCTCTCTTACTTTTG  900

seq1  GGCC-TTCCCTTTATGATGTCAGGT-CACCAGTGCTGGACA-CATCCCTG  947
      |||| |||||||||||||||||||| ||||||||||||||| ||||||||
seq2  GGCCTTTCCCTTTATGATGTCAGGTCCACCAGTGCTGGACACCATCCCTG  950

seq1  GTTAGTCATGCCCTTATCTCCTGGTAAGAACCTATCTTCCTTTTGAGAGT  997
      | ||||||||||| ||||| ||||||   ||||||||||| |||||||||
seq2  G-TAGTCATGCCC-TATCT-CTGGTA--GACCTATCTTCC-TTTGAGAGT  994

seq1  GCTTTCTGTCCAGTGGGTACAACTACATAGATACCTGTCATACCTCTGGA  1047
      ||||||||| |||||||||| |||||||||||| ||||||||| |||| |
seq2  GCTTTCTGT-CAGTGGGTAC-ACTACATAGATA-CTGTCATACTTCTGAA  1041

seq1  CAATCCTCCAGAAGTCTAATTGTGAATGCAGGTGAGACAACTGTGCAATC  1097
      |||| || ||| ||||| ||||   ||||||||||||| |||  ||||||
seq2  CAAT-CTTCAG-AGTCTTATTGGTGATGCAGGTGAGAC-ACTTGGCAATC  1088

seq1  TTTTTTATTATCCAGTGTCAGCATTAAGTTGGCCCCTAGG  1137
       |||||||||| ||| ||||||||  |||||  |||||||
seq2  -TTTTTATTAT-CAG-GTCAGCAT--AGTTG--CCCTAGG  1121