BAC Information

Click to search

BAC

Clone NameB6Ng01-212G24
Chromosome9 (Build37)
Map Location 33,028,849 - 33,029,903
singlet/doubletsinglet
Overlap genenone
Upstream geneGrit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212G24.bB6Ng01-212G24.g
ACCGA030234GA030235
length3271,072
definitionB6Ng01-212G24.b B6Ng01-212G24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ggaattctgacagctaaacatttaagcagagaaagaggcaggatgtaagg
caagggagggatcaggatgcactgatcatggatcacagggcccccagtgg
aggagctagagaaagaacccaaggagctaaaggggtctgcaaccctatag
atggaacaacgatatgaactaaccagtacccccagagctcatgtctctag
ctgcatatgtagcagaagatggcctagttggccatcaatggaaagagagg
cccattggtcgtgcaaactttatatgcctcagtacaggggaatgccaggg
ccaagaagtgggagtgggtgggtaggg

gaattctctgcacacgttcttactgcagtgcttctgagtgaaaacctgaa
aaccgtgtccatatattattatctctgcttgatgctcaaaagaagacaaa
aatacatctgcttcatagtattaattttaagggcgtggaaactcacatga
agacaggtaaatgaagtcctgggatcccacacataagggagtgacaaacc
actaagtttcatctacacctactaattctatttcattctttttttagtct
gtgaatggaatttctaataacttcacaaaatgtcagaaaacacatcctaa
tttttctctaaacatttgaaagttttccctgtgatccactacttcaatat
ataatcatgcattttttccctgaactcttctcttttagattaataattta
aaaatattttgattgtgtgtgtatgtgagctctctcaagcatgccaggct
gaggtcagtagacaaacacaaggagttggttctctctttacactatgaag
gcgctaggattctggcttaggtagccaggtttcatggtatgcaaataccc
attcagtgagccttctctatcatgcttacagacatcgtaagctcttgtca
tatttactcaaagaactttctatttaggcagtctttcccttgagaaatcc
aacactcagggcaagatctgaggacaaggtatcatgtgcatgtattgctt
tgtaataagtgttcaataactacccgctaaagaaaagacattctttcaga
cacttctctaattgtttcctatcatctttctcattttgagctgtttacat
ttcgaaacactatgctcagcgcaattcatgaattctcacaaagacattcc
tttgctctctgctctttccacaccaggaaattgaggaacaaaggcacagg
caggattttcttctcacaaggaacatagaggcttatttcctttcatcagt
ccgaatctcaaggccactataagtattttggcacaaggacacctcatcaa
atggtggtaatgggaacttgaagttgaacccagaagctctggctccatgg
tctgccagtcctcatcattagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_33028849_33029903
seq2: B6Ng01-212G24.g_69_1140

seq1  GAATTCTCTGCACACGTTCTTACTGCAGTGCTTCTGAGTGAAAACCTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCACACGTTCTTACTGCAGTGCTTCTGAGTGAAAACCTGAA  50

seq1  AACCGTGTCCATATATTATTATCTCTGCTTGATGCTCAAAAGAAGACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGTGTCCATATATTATTATCTCTGCTTGATGCTCAAAAGAAGACAAA  100

seq1  AATACATCTGCTTCATAGTATTAATTTTAAGGGCGTGGAAACTCACATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATCTGCTTCATAGTATTAATTTTAAGGGCGTGGAAACTCACATGA  150

seq1  AGACAGGTAAATGAAGTCCTGGGATCCCACACATAAGGGAGTGACAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGTAAATGAAGTCCTGGGATCCCACACATAAGGGAGTGACAAACC  200

seq1  ACTAAGTTTCATCTACACCTACTAATTCTATTTCATTCTTTTTTTAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTTTCATCTACACCTACTAATTCTATTTCATTCTTTTTTTAGTCT  250

seq1  GTGAATGGAATTTCTAATAACTTCACAAAATGTCAGAAAACACATCCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGGAATTTCTAATAACTTCACAAAATGTCAGAAAACACATCCTAA  300

seq1  TTTTTCTCTAAACATTTGAAAGTTTTCCCTGTGATCCACTACTTCAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCTAAACATTTGAAAGTTTTCCCTGTGATCCACTACTTCAATAT  350

seq1  ATAATCATGCATTTTTTCCCTGAACTCTTCTCTTTTAGATTAATAATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCATGCATTTTTTCCCTGAACTCTTCTCTTTTAGATTAATAATTTA  400

seq1  AAAATATTTTGATTGTGTGTGTATGTGAGCTCTCTCAAGCATGCCAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTTGATTGTGTGTGTATGTGAGCTCTCTCAAGCATGCCAGGCT  450

seq1  GAGGTCAGTAGACAAACACAAGGAGTTGGTTCTCTCTTTACACTATGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCAGTAGACAAACACAAGGAGTTGGTTCTCTCTTTACACTATGAAG  500

seq1  GCGCTAGGATTCTGGCTTAGGTAGCCAGGTTTCATGGTATGCAAATACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTAGGATTCTGGCTTAGGTAGCCAGGTTTCATGGTATGCAAATACCC  550

seq1  ATTCAGTGAGCCTTCTCTATCATGCTTACAGACATCGTAAGCTCTTGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTGAGCCTTCTCTATCATGCTTACAGACATCGTAAGCTCTTGTCA  600

seq1  TATTTACTCAAAGAACTTTCTATTTAGGCAGTCTTTCCCTTGAGAAATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACTCAAAGAACTTTCTATTTAGGCAGTCTTTCCCTTGAGAAATCC  650

seq1  AACACTCAGGGCAAGATCTGAGGACAAGGTATCATGTGCATGTATTGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTCAGGGCAAGATCTGAGGACAAGGTATCATGTGCATGTATTGCTT  700

seq1  TGTAATAAGTGTTCAATAACTACCCGCTAAAG-AAAGACATTC-TTCAGA  748
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  TGTAATAAGTGTTCAATAACTACCCGCTAAAGAAAAGACATTCTTTCAGA  750

seq1  CACTTCTCTAATTGTTTCCTATCATCTTTCTCATTTTGAGCTGTTTACAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTCTAATTGTTTCCTATCATCTTTCTCATTTTGAGCTGTTTACAT  800

seq1  TTCG-AACACTATGCTCAGCGCAATTCATGAATTCTCACAAAGACATTCC  847
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAAACACTATGCTCAGCGCAATTCATGAATTCTCACAAAGACATTCC  850

seq1  TTTGCTCTCTGCTCTTTCCACACCAGGAAATTGAGAAACAAAGGCACAGG  897
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTGCTCTCTGCTCTTTCCACACCAGGAAATTGAGGAACAAAGGCACAGG  900

seq1  CAGGA-TTTCTTCTCACAAGG-ACATAGA-GCTTATT--CCTTCATCAGT  942
      ||||| ||||||||||||||| ||||||| |||||||  | |||||||||
seq2  CAGGATTTTCTTCTCACAAGGAACATAGAGGCTTATTTCCTTTCATCAGT  950

seq1  CCG-ATCTCAA-GCCACTAT-AGTATTTTGCCACAAGACCACC-CATCAA  988
      ||| ||||||| |||||||| ||||||||| ||||||  |||| ||||||
seq2  CCGAATCTCAAGGCCACTATAAGTATTTTGGCACAAGGACACCTCATCAA  1000

seq1  --TGTGGTAATGGG-ACCTGAGGTTGAACCCAAGAGCTCTGGCT-CATGG  1034
         ||||||||||| || ||| ||||||||||  |||||||||| |||||
seq2  ATGGTGGTAATGGGAACTTGAAGTTGAACCCAGAAGCTCTGGCTCCATGG  1050

seq1  CCTG-CAGTCCTCATCATTAGG  1055
       ||| |||||||||||||||||
seq2  TCTGCCAGTCCTCATCATTAGG  1072


| Home | SequenceCutter | Blast | Download |