BAC Information

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BAC

Clone NameB6Ng01-213O14
Chromosome9 (Build37)
Map Location 96,064,399 - 96,193,841
singlet/doubletdoublet
Overlap geneGk5, Tfdp2
Upstream geneSlc9a9, Chst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik, Xrn1
Downstream gene1110029I05Rik, Atp1b3, BC043934, Rnf7, LOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216, Acpl2, LOC19034, LOC667226, Spsb4, LOC100040254, Slc25a36, EG622727, LOC384971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213O14.bB6Ng01-213O14.g
ACCGA031302GA031303
length7221,077
definitionB6Ng01-213O14.b B6Ng01-213O14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,064,399 - 96,065,120)(96,192,809 - 96,193,841)
sequence
gaattcactctcgcacctgcgtacaaggcttgtttactagttaggcacag
tggaggcccgcgccatcttataatggcgattgctcgccgcacacacggct
ctcctcagagattactggcggcacgcacgcgattgctcgaagcacgtacc
ggctctccacatacaaccacacccaccacaccccccccacaatatcagac
ttggacccaaacagccctactcccagtggaactttgctgggctctctatt
ttataaacttacatgtcagttggtaacaaatgttcttaatgctctcccat
tggagattgtggggggttggttttcttctgcagtttagtggtactagctt
tagagttctggaacaatagtctcttttctttcataatttaaatgatgtgg
ttcagccgggcgtggtggcgcacatctttaatcccagcactggggaggca
gaggcaggcggatttctgagttcgaggccagcctggtctacaaagtgagt
tccaggacagccaggactacacagagaaaccctgtctcgaaaaaccaaaa
taaataaatgaatgaatgaatgatgtggttctgggctgcagtgtagcttc
gaggcagagcagttgcctggcaccagaccctgggcttaactcccagtgct
gcatagatagatagatagatagatagatagatagatagatagatagtgca
aagatggatggatgggtggata
gaattcactctgtagaccaggctaaccttaaactcaagagattaagtttc
tgcctgcttctgcctcccgtgtgctgggagcaaaggtgcgcaccatcttg
ccagatcattgggattttcttagtcagtctatttgaaacaaagagattca
ccataattctcagccacaccttctggtggcagcccagataaagaacatgc
aatacggaaattctgccttttgcctgcttgtccttgatctcactggcaag
ctcctctgtcctatggctgaagcattccttcaatagttttagatccaatt
ccttcaggatttcaacattcaccaaagaccagtagctctccaggaacctt
ccagaactccagctccagactggagggactcacagactgaattactatgt
gcttcttggctttttccactatgaaacagccattgctggactacccagac
cacaccctataaaccagtctaaattgctttttagtgtgtgtgtgtgtgtg
tattctttctagtacttctgttcctttagagaataataacgaatacaatt
aggaaagactcattaatggatcccaaagtacaggcactgtatcttacagg
ctacttttaaaatgcagtgaaaccactaagtggtttttgagttgcacagt
gagatacttactgacttatgcagaaactcttgtgttaaagtgaaaggtaa
atttatgggaaaataggaggtgaaagaaaagtcagctaagaagccaacta
caacagctgagcggatgacctggaactgggtcagtggaagggaaaaggga
cagacagaactgcaaaaagtagtgaaactaagaatctgattgatatggag
agaaagaaacagagaaatagcaagtctgaattgagtgcttaagtagtagt
aggtacactctgaggggctggtgagatggctcaatagataaaggtgtttg
tctccagtccatgaacccagttagacctggaccccaaacaggaaaataac
tgatccattaaattgtcctctcacttacataattgtttagtgcatatgca
caccaacacctgatagacaccaaatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_96064399_96065120
seq2: B6Ng01-213O14.b_43_764

seq1  GAATTCACTCTCGCACCTGCGTACAAGGCTTGTTTACTAGTTAGGCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTCGCACCTGCGTACAAGGCTTGTTTACTAGTTAGGCACAG  50

seq1  TGGAGGCCCGCGCCATCTTATAATGGCGATTGCTCGCCGCACACACGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCCCGCGCCATCTTATAATGGCGATTGCTCGCCGCACACACGGCT  100

seq1  CTCCTCAGAGATTACTGGCGGCACGCACGCGATTGCTCGAAGCACGTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGAGATTACTGGCGGCACGCACGCGATTGCTCGAAGCACGTACC  150

seq1  GGCTCTCCACATACAACCACACCCACCACACCCCCCCCACAATATCAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCCACATACAACCACACCCACCACACCCCCCCCACAATATCAGAC  200

seq1  TTGGACCCAAACAGCCCTACTCCCAGTGGAACTTTGCTGGGCTCTCTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACCCAAACAGCCCTACTCCCAGTGGAACTTTGCTGGGCTCTCTATT  250

seq1  TTATAAACTTACATGTCAGTTGGTAACAAATGTTCTTAATGCTCTCCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAACTTACATGTCAGTTGGTAACAAATGTTCTTAATGCTCTCCCAT  300

seq1  TGGAGATTGTGGGGGGTTGGTTTTCTTCTGCAGTTTAGTGGTACTAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATTGTGGGGGGTTGGTTTTCTTCTGCAGTTTAGTGGTACTAGCTT  350

seq1  TAGAGTTCTGGAACAATAGTCTCTTTTCTTTCATAATTTAAATGATGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTCTGGAACAATAGTCTCTTTTCTTTCATAATTTAAATGATGTGG  400

seq1  TTCAGCCGGGCGTGGTGGCGCACATCTTTAATCCCAGCACTGGGGAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCGGGCGTGGTGGCGCACATCTTTAATCCCAGCACTGGGGAGGCA  450

seq1  GAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGT  500

seq1  TCCAGGACAGCCAGGACTACACAGAGAAACCCTGTCTCGAAAAACCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGACAGCCAGGACTACACAGAGAAACCCTGTCTCGAAAAACCAAAA  550

seq1  TAAATAAATGAATGAATGAATGATGTGGTTCTGGGCTGCAGTGTAGCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATGAATGAATGAATGATGTGGTTCTGGGCTGCAGTGTAGCTTC  600

seq1  GAGGCAGAGCAGTTGCCTGGCACCAGACCCTGGGCTTAACTCCCAGTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGCAGTTGCCTGGCACCAGACCCTGGGCTTAACTCCCAGTGCT  650

seq1  GCATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGTGCA  700

seq1  AAGATGGATGGATGGGTGGATA  722
      ||||||||||||||||||||||
seq2  AAGATGGATGGATGGGTGGATA  722

seq1: chr9_96192809_96193841
seq2: B6Ng01-213O14.g_121_1149 (reverse)

seq1  TGATTTTGTGTTTATCA-GTGTTGGTGTGCATATGCCACTAAACAATTAT  49
      |||||| |||| ||||| ||||||||||||||||| ||||||||||||||
seq2  TGATTTGGTGTCTATCAGGTGTTGGTGTGCATATG-CACTAAACAATTAT  49

seq1  GTAAGTGAGAGGACAATTTAATGGAATCAGTTATTTTCCTGTTTGGGGTC  99
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTAAGTGAGAGGACAATTTAATGG-ATCAGTTATTTTCCTGTTTGGGGTC  98

seq1  CAGGTCTAACTGGGGTCATTGGACTTGGAGACAAACACCTTTATCTATTG  149
      |||||||||||||| ||| ||||| |||||||||||||||||||||||||
seq2  CAGGTCTAACTGGGTTCA-TGGAC-TGGAGACAAACACCTTTATCTATTG  146

seq1  AGCCATCTCACCAGCCCCTCAGAGTGTACCTACTACTACTTAAGCACTCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTCACCAGCCCCTCAGAGTGTACCTACTACTACTTAAGCACTCA  196

seq1  ATTCAGACTTTGCTATTTCTCTGTTTCTTTCTCTCCATATCAATCAGATT  249
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAC-TTGCTATTTCTCTGTTTCTTTCTCTCCATATCAATCAGATT  245

seq1  CTTAGTTTCACTACTTTTTGCAGTTCTGTCTGTCCCTTTTCCCTTCCACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTTCACTACTTTTTGCAGTTCTGTCTGTCCCTTTTCCCTTCCACT  295

seq1  GACCCAGTTCCAGGTCATCCGCTCAGCTGTTGTAGTTGGCTTCTTAGCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGTTCCAGGTCATCCGCTCAGCTGTTGTAGTTGGCTTCTTAGCTG  345

seq1  ACTTTTCTTTCACCTCCTATTTTCCCATAAATTTACCTTTCACTTTAACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTTTCACCTCCTATTTTCCCATAAATTTACCTTTCACTTTAACA  395

seq1  CAAGAGTTTCTGCATAAGTCAGTAAGTATCTCACTGTGCAACTCAAAAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTTTCTGCATAAGTCAGTAAGTATCTCACTGTGCAACTCAAAAAC  445

seq1  CACTTAGTGGTTTCACTGCATTTTAAAAGTAGCCTGTAAGATACAGTGCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGTGGTTTCACTGCATTTTAAAAGTAGCCTGTAAGATACAGTGCC  495

seq1  TGTACTTTGGGATCCATTAATGAGTCTTTCCTAATTGTATTCGTTATTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTTGGGATCCATTAATGAGTCTTTCCTAATTGTATTCGTTATTAT  545

seq1  TCTCTAAAGGAACAGAAGTACTAGAAAGAATACACACACACACACACACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAAGGAACAGAAGTACTAGAAAGAATACACACACACACACACACT  595

seq1  AAAAAGCAATTTAGACTGGTTTATAGGGTGTGGTCTGGGTAGTCCAGCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCAATTTAGACTGGTTTATAGGGTGTGGTCTGGGTAGTCCAGCAA  645

seq1  TGGCTGTTTCATAGTGGAAAAAGCCAAGAAGCACATAGTAATTCAGTCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTTTCATAGTGGAAAAAGCCAAGAAGCACATAGTAATTCAGTCTG  695

seq1  TGAGTCCCTCCAGTCTGGAGCTGGAGTTCTGGAAGGTTCCTGGAGAGCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCCTCCAGTCTGGAGCTGGAGTTCTGGAAGGTTCCTGGAGAGCTA  745

seq1  CTGGTCTTTGGTGAATGTTGAAATCCTGAAGGAATTGGATCTAAAACTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTTTGGTGAATGTTGAAATCCTGAAGGAATTGGATCTAAAACTAT  795

seq1  TGAAGGAATGCTTCAGCCATAGGACAGAGGAGCTTGCCAGTGAGATCAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAATGCTTCAGCCATAGGACAGAGGAGCTTGCCAGTGAGATCAAG  845

seq1  GACAAGCAGGCAAAAGGCAGAATTTCCGTATTGCATGTTCTTTATCTGGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGCAGGCAAAAGGCAGAATTTCCGTATTGCATGTTCTTTATCTGGG  895

seq1  CTGCCACCAGAAGGTGTGGCTGAGAATTATGGTGAATCTCTTTGTTTCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACCAGAAGGTGTGGCTGAGAATTATGGTGAATCTCTTTGTTTCAA  945

seq1  ATAGACTGACTAAGAAAATCCCAATGATCTGGCAAGATGGTGCGCACCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTGACTAAGAAAATCCCAATGATCTGGCAAGATGGTGCGCACCTT  995

seq1  TGCTCCCAGCACACGGGAGGCAGAAGCAGGCAGA  1033
      ||||||||||||||||||||||||||||||||||
seq2  TGCTCCCAGCACACGGGAGGCAGAAGCAGGCAGA  1029