BAC Information

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BAC

Clone NameB6Ng01-214J19
Chromosome9 (Build37)
Map Location 108,018,315 - 108,171,043
singlet/doubletdoublet
Overlap geneBsn, LOC100042108, Dag1
Upstream geneDock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh
Downstream geneNicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214J19.bB6Ng01-214J19.g
ACCGA031817GA031818
length1,1481,022
definitionB6Ng01-214J19.b B6Ng01-214J19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,169,895 - 108,171,043)(108,018,315 - 108,019,326)
sequence
gaattcaaaccatactcacccttgctgtggggttcctgctgtatacaaac
tttacattcagccaggcgtggtggcacacgcctttaatcccagcatttgg
gaggcagaggcaggtggatttctgagttcgaggccagcctggtctacaaa
gtgagttccaggacagccagggctatacagagaaaccctgtctcgaaacc
cccccccccaaaaaaaaagaactttacattcctagagaggccaagtatgg
ctcaactgagaggtgtcacccatgtcaacagttaagagcactgggtgttt
ttcaggaggactcatgtttgattcggtgaacccacacaggtgaccagaaa
tcatttgtaacttcagttgccttggtgcacaaagtcacatggtagtcaaa
tatatatacaaacaaaagaccatacacattaaagtaaaaacaaataaatc
tttaaaaagtaaaaataaagaaagcctggtggtctggtgtggtgactcac
acctgtaatctcagttctgggcaggctggggcatgagaacttttcaaaag
acagtttgggccacataggagttccagtgtagcctgaggtatatagaaaa
gaaaaaaggacaggaaggagaaagaaggaaggaaagaaagaaggaaggag
agataaaatgaaggaaaagaaaagaaatggagcgtggaaatgcagtgtct
tacaatggaacacagaattggcagccagccgggcaagccgatggtgacgc
taaaacttgcctactggcagtttctctcttatcagccatactttctgccc
gggctgcaggacaatttgcctagtgttaagtccaaacaaagggaaccctt
cccttgttctgacgtggctggacgggtctgccaggcactgttccaggcat
gcttgctggtctggcatgtgagttagtagtctacccttggtcagccactg
gtctagtcctgctctgtcagaagaggaggatgactcagccccagagccac
actcttagaaggatagggcactgggcccttggtgcttcaacaacatgcca
gaattaaagagcaggcctggtatcctaccttagaagaccagtattctgtc
atgtgtttactggattggtctgagggagatgcatggtcttagctttca
gaattcttcatcagtcatgtctgcccgggctgggggctgaggtgggaggg
gagacaagccgccttcgctgctgtcttccacgtagtcatgcctcagctgg
ctgccaaagtcatctgaagactcagctgtgtcctgctgttccctctgacg
tccccatgccaaggagtcgtcctcctctagaatgtcccccagttcctcat
ccgagtcgaaggcctcgggcgtgatggacagggagtgaggacgccgtttc
tggtcttcaaccgcactgctgctgctgcggggtggcttgctccattccgc
actgggagctacagcctgggcctccagtgaagggcgcaagctactaccca
ctttgtggagctccgaggggctgggtggacgtgggcctgtcacccctgca
ctgtcaagctgttccacttcttgctgtacaacacctgtgatctcgctctg
ggagctggagacaccgtcggaggagtagcctgtgtcactgaggctctgtg
ggcttcgagacaggtcctgagaataaggcttggggactggttcctgcata
gggtaaaaagcaggcatttactcctgatctcctgtcaatcccaaggacca
cgggaaggggccctccacaccctaggggctatctctctggccccacataa
cttacagacttcacagcaagagaaactttactagatgaatgtgtgggaga
ccagcaaagtggcagacacaggacgtgtctccatcccacagactccagac
cagctgaacttcatttgttgtttgttgttgttgtttgtgacagggtctct
ctacagagccttggctgttcctagaactcaccaggtagactaggcttagc
cttggaactcacaaagatcttgacctgcctctgccttccaaagttgttgg
gactaaaaggagtgtgccatcatcccagttgatctactggaaacttaatc
caaaaccctctttcaacttagggtgtctcatgtgacccaatagatctgtc
ttaggcttcattgttagccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_108169895_108171043
seq2: B6Ng01-214J19.b_47_1194 (reverse)

seq1  TGAAAGCTAAGACCTTCGTTCTCCCTCAGACCAAATCCAGTAAACACCAT  50
      |||||||||||||| |   ||||||||||||| ||||||||||||| |||
seq2  TGAAAGCTAAGACCATGCATCTCCCTCAGACC-AATCCAGTAAACA-CAT  48

seq1  GAACAG-ATACTCGTTCTTCTAAGGTAGGATTCCAGGGCTTGCTCTTT-A  98
      | |||| ||||| | |||||||||||||||| ||| ||| |||||||| |
seq2  G-ACAGAATACT-GGTCTTCTAAGGTAGGATACCA-GGCCTGCTCTTTAA  95

seq1  TTCTGGCATGTTGCTGAGGCACCAAGGG-CCAGTGCCCTATCC-TCTAAG  146
      ||||||||||||| ||| |||||||||| |||||||||||||| ||||||
seq2  TTCTGGCATGTTGTTGAAGCACCAAGGGCCCAGTGCCCTATCCTTCTAAG  145

seq1  AGTGTGGCTCTTGGGGCTGAGTCTTCCTCCTCTTCTGACAGAGCAGGACT  196
      |||||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  AGTGTGGCTC-TGGGGCTGAGTCATCCTCCTCTTCTGACAGAGCAGGACT  194

seq1  AGACCAGT-GCTGACCAAGGGTAGACTACTAACTCACATGCCAGACCAGC  245
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGTGGCTGACCAAGGGTAGACTACTAACTCACATGCCAGACCAGC  244

seq1  AAGCATGCCTGGAACAGTGCCTGGCAGACCCGTCCAGCCACGTCAGAACA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGCCTGGAACAGTGCCTGGCAGACCCGTCCAGCCACGTCAGAACA  294

seq1  AGGGAAGGGTTCCCTTTGTTTGGACTTAACACTAGGCAAATTGTCCTGCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGGGTTCCCTTTGTTTGGACTTAACACTAGGCAAATTGTCCTGCA  344

seq1  GCCCGGGCAGAAAGTATGGCTGATAAGAGAGAAACTGCCAGTAGGCAAGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGGCAGAAAGTATGGCTGATAAGAGAGAAACTGCCAGTAGGCAAGT  394

seq1  TTTAGCGTCACCATCGGCTTGCCCGGCTGGCTGCCAATTCTGTGTTCCAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCGTCACCATCGGCTTGCCCGGCTGGCTGCCAATTCTGTGTTCCAT  444

seq1  TGTAAGACACTGCATTTCCACGCTCCATTTCTTTTCTTTTCCTTCATTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGACACTGCATTTCCACGCTCCATTTCTTTTCTTTTCCTTCATTTT  494

seq1  ATCTCTCCTTCCTTCTTTCTTTCCTTCCTTCTTTCTCCTTCCTGTCCTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCCTTCCTTCTTTCTTTCCTTCCTTCTTTCTCCTTCCTGTCCTTT  544

seq1  TTTCTTTTCTATATACCTCAGGCTACACTGGAACTCCTATGTGGCCCAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTCTATATACCTCAGGCTACACTGGAACTCCTATGTGGCCCAAA  594

seq1  CTGTCTTTTGAAAAGTTCTCATGCCCCAGCCTGCCCAGAACTGAGATTAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTTGAAAAGTTCTCATGCCCCAGCCTGCCCAGAACTGAGATTAC  644

seq1  AGGTGTGAGTCACCACACCAGACCACCAGGCTTTCTTTATTTTTACTTTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGAGTCACCACACCAGACCACCAGGCTTTCTTTATTTTTACTTTT  694

seq1  TAAAGATTTATTTGTTTTTACTTTAATGTGTATGGTCTTTTGTTTGTATA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATTTATTTGTTTTTACTTTAATGTGTATGGTCTTTTGTTTGTATA  744

seq1  TATATTTGACTACCATGTGACTTTGTGCACCAAGGCAACTGAAGTTACAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGACTACCATGTGACTTTGTGCACCAAGGCAACTGAAGTTACAA  794

seq1  ATGATTTCTGGTCACCTGTGTGGGTTCACCGAATCAAACATGAGTCCTCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTCTGGTCACCTGTGTGGGTTCACCGAATCAAACATGAGTCCTCC  844

seq1  TGAAAAACACCCAGTGCTCTTAACTGTTGACATGGGTGACACCTCTCAGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAACACCCAGTGCTCTTAACTGTTGACATGGGTGACACCTCTCAGT  894

seq1  TGAGCCATACTTGGCCTCTCTAGGAATGTAAAGTTCTTTTTTTTTGGGGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATACTTGGCCTCTCTAGGAATGTAAAGTTCTTTTTTTTTGGGGG  944

seq1  GGGGGGTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAAC  994

seq1  TCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTG  1044

seq1  CCTCCCAAATGCTGGGATTAAAGGCGTGTGCCACCACGCCTGGCTGAATG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAAATGCTGGGATTAAAGGCGTGTGCCACCACGCCTGGCTGAATG  1094

seq1  TAAAGTTTGTATACAGCAGGAACCCCACAGCAAGGGTGAGTATGGTTTGA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTTGTATACAGCAGGAACCCCACAGCAAGGGTGAGTATGGTTTGA  1144

seq1  ATTC  1149
      ||||
seq2  ATTC  1148

seq1: chr9_108018315_108019326
seq2: B6Ng01-214J19.g_68_1089

seq1  GAATTCTTCATCAGTCATGTCTGCCCGGGCTGGGGGCTGAGGTGGGAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATCAGTCATGTCTGCCCGGGCTGGGGGCTGAGGTGGGAGGG  50

seq1  GAGACAAGCCGCCTTCGCTGCTGTCTTCCACGTAGTCATGCCTCAGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAGCCGCCTTCGCTGCTGTCTTCCACGTAGTCATGCCTCAGCTGG  100

seq1  CTGCCAAAGTCATCTGAAGACTCAGCTGTGTCCTGCTGTTCCCTCTGACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAAGTCATCTGAAGACTCAGCTGTGTCCTGCTGTTCCCTCTGACG  150

seq1  TCCCCATGCCAAGGAGTCGTCCTCCTCTAGAATGTCCCCCAGTTCCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATGCCAAGGAGTCGTCCTCCTCTAGAATGTCCCCCAGTTCCTCAT  200

seq1  CCGAGTCGAAGGCCTCGGGCGTGATGGACAGGGAGTGAGGACGCCGTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTCGAAGGCCTCGGGCGTGATGGACAGGGAGTGAGGACGCCGTTTC  250

seq1  TGGTCTTCAACCGCACTGCTGCTGCTGCGGGGTGGCTTGCTCCATTCCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTCAACCGCACTGCTGCTGCTGCGGGGTGGCTTGCTCCATTCCGC  300

seq1  ACTGGGAGCTACAGCCTGGGCCTCCAGTGAAGGGCGCAAGCTACTACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAGCTACAGCCTGGGCCTCCAGTGAAGGGCGCAAGCTACTACCCA  350

seq1  CTTTGTGGAGCTCCGAGGGGCTGGGTGGACGTGGGCCTGTCACCCCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGGAGCTCCGAGGGGCTGGGTGGACGTGGGCCTGTCACCCCTGCA  400

seq1  CTGTCAAGCTGTTCCACTTCTTGCTGTACAACACCTGTGATCTCGCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAAGCTGTTCCACTTCTTGCTGTACAACACCTGTGATCTCGCTCTG  450

seq1  GGAGCTGGAGACACCGTCGGAGGAGTAGCCTGTGTCACTGAGGCTCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGGAGACACCGTCGGAGGAGTAGCCTGTGTCACTGAGGCTCTGTG  500

seq1  GGCTTCGAGACAGGTCCTGAGAATAAGGCTTGGGGACTGGTTCCTGCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCGAGACAGGTCCTGAGAATAAGGCTTGGGGACTGGTTCCTGCATA  550

seq1  GGGTAAAAAGCAGGCATTTACTCCTGATCTCCTGTCAATCCCAAGGACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAAAAGCAGGCATTTACTCCTGATCTCCTGTCAATCCCAAGGACCA  600

seq1  CGGGAAGGGGCCCTCCACACCCTAGGGGCTATCTCTCTGGCCCCACATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAAGGGGCCCTCCACACCCTAGGGGCTATCTCTCTGGCCCCACATAA  650

seq1  CTTACAGACTTCACAGCAAGAGAAACTTTACTAGATGAATGTGTGGGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGACTTCACAGCAAGAGAAACTTTACTAGATGAATGTGTGGGAGA  700

seq1  CCAGCAAAGTGGCAGACACAGGACGTGTCTCCATCCCACAGACTCCAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAAGTGGCAGACACAGGACGTGTCTCCATCCCACAGACTCCAGAC  750

seq1  CAGCTGAACTTCATTTGTTGTTTGTTGTTGTTGTTTTGTGACAGGGTCTC  800
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAGCTGAACTTCATTTGTTGTTTGTTGTTGTTG-TTTGTGACAGGGTCTC  799

seq1  TCTACAGAGCCTTGGCTG-TCCTAGAACTCACCAGGTAGACTAGGC-TAG  848
      |||||||||||||||||| ||||||||||||||||||||||||||| |||
seq2  TCTACAGAGCCTTGGCTGTTCCTAGAACTCACCAGGTAGACTAGGCTTAG  849

seq1  CCTT-GAACTCACAAAGATC-TGA-CTGCCTCTGCC-TCCAAAG-TGTTG  893
      |||| ||||||||||||||| ||| ||||||||||| ||||||| |||||
seq2  CCTTGGAACTCACAAAGATCTTGACCTGCCTCTGCCTTCCAAAGTTGTTG  899

seq1  GGACT-AAAGGAGTGTGCCATCATCCCAG-TGATCTACT-GAAACTTAAT  940
      ||||| ||||||||||||||||||||||| ||||||||| ||||||||||
seq2  GGACTAAAAGGAGTGTGCCATCATCCCAGTTGATCTACTGGAAACTTAAT  949

seq1  -CTAGACCCTCTTTCAAC-TAGGGTGTCTC-TGTGACCCCAATAGATCTG  987
       | | ||||||||||||| ||||||||||| ||||| |||||||||||||
seq2  CCAAAACCCTCTTTCAACTTAGGGTGTCTCATGTGA-CCCAATAGATCTG  998

seq1  TCTTAGGCCTACATTGTTAGCCCTT  1012
      ||||||| || ||||||||||| ||
seq2  TCTTAGG-CTTCATTGTTAGCCTTT  1022