BAC Information

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BAC

Clone NameB6Ng01-215E17
Chromosome9 (Build37)
Map Location 92,207,501 - 92,327,727
singlet/doubletdoublet
Overlap gene1700057G04Rik, LOC666850
Upstream geneZic1, Zic4, LOC331000, Plscr1, Plscr2
Downstream genePlscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114, LOC674371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215E17.bB6Ng01-215E17.g
ACCGA032304GA032305
length1,139479
definitionB6Ng01-215E17.b B6Ng01-215E17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,207,501 - 92,208,279)(92,327,243 - 92,327,727)
sequence
gaattcaagagactctccaaacaacgcaggctcttttgctctttggtggc
ctctaagaggttaacagtaaattctttttgctaaagacatcaagtactgt
gggcccaggacttggaggatgcaagctggatctggccagacagcctcctt
cctgaagactaagttttatagtccctgaatgggctatttaaactaccaag
gcagacatgaaaccaataatcctagtcaatttgtgaagcctatgaagtac
aaaataatcatcatgacaagatgtctctaaaggtgcaatggtggcattca
tatcttggtgctaaccaatagttgtctaattggatttaagacccactctg
cataaagcaattcatggctagtacttgaaacctggacagttttccagagc
tagagatgacatggaggagaacaaatgactgccactttaccaaacaagca
tggttcctaaaaggattctgaatactcattcttatatccacagataaaca
tagcttccatcacttactaaaagagagttggtacaacaaaggatcttttc
aacagacagaccattacagaaaataacaactgataagatacaagaaacaa
ttgactatgtctgtctatctataatgggaatatcttacaacacagctcct
gtttctaaggctcagttagattaaaagcaaaatgagagctatagcaaata
atcttccaattagtaaagggccttgtacagacggattcactattgagtta
tcagacctttaaaggataacttaaatcaatgcttctcaaattattctgtc
aaattaaaaaagaaagtggggacacttccaaattatttctacaaaatgtt
ccctgacaagaaaagcttacattgtcaagaaaagctggtagatacaatac
aagaacccatagagcaatttttaactcccctgactacttgaagtgagatt
ttttcattcttctatttatattttgtagtctatgggtcttgagggaagca
ttaccacctcaagtaacattatttcatttaaatatgcatatgtgtataat
acatcatatgtattatatgtatttcagtaaacatgaatgtcatgatcctt
aatagccctttcgagggtgtctatagtgctcaatatgac

actgccctccaacccctgaatggggcttgggcagtgatataggctgtagc
gctgtggatttgaagctgactgggtttgaggggcctacagagaagatcag
agaggcatctatgcccgagagagcctttctgtgtttgcttctctatattc
tttgctccccaccctaactcccccacctccaaacaagctccccccatgaa
taaagaattgggagacaaaggtacaaagggctccagaccaggtaattcat
tgatataaagagagaaatatagccttttgatacttaaagctggtatgaag
atacattgctctaataagtcttacaggagactcatattctgtctaacatg
ggctccacaggaattgtgggtttaaatactgatttgaaaagctgcctctt
ataagcagatatagacaggaaagggaaaggggaaagggaaaggggaaagg
ggaaagggaaaggggaaaggggaaaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_92207501_92208279
seq2: B6Ng01-215E17.b_407_1181

seq1  TGGCTAGTACTTGAAACCTGGACAGTTTTCCAGAGCTAGAGATGACATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGTACTTGAAACCTGGACAGTTTTCCAGAGCTAGAGATGACATGG  50

seq1  AGGAGAACAAATGACTGCCACTTTACCAAACAAGCATGGTTCCTAAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAACAAATGACTGCCACTTTACCAAACAAGCATGGTTCCTAAAAGG  100

seq1  ATTCTGAATACTCATTCTTATATCCACAGATAAACATAGCTTCCATCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAATACTCATTCTTATATCCACAGATAAACATAGCTTCCATCACT  150

seq1  TACTAAAAGAGAGTTGGTACAACAAAGGATCTTTTCAACAGACAGACCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAAAGAGAGTTGGTACAACAAAGGATCTTTTCAACAGACAGACCAT  200

seq1  TACAGAAAATAACAACTGATAAGATACAAGAAACAATTGACTATGTCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAAATAACAACTGATAAGATACAAGAAACAATTGACTATGTCTGT  250

seq1  CTATCTATAATGGGAATATCTTACAACACAGCTCCTGTTTCTAAGGCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATAATGGGAATATCTTACAACACAGCTCCTGTTTCTAAGGCTCA  300

seq1  GTTAGATTAAAAGCAAAATGAGAGCTATAGCAAATAATCTTCCAATTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGATTAAAAGCAAAATGAGAGCTATAGCAAATAATCTTCCAATTAGT  350

seq1  AAAGGGCCTTGTACAGACGGATTCACTATTGAGTTATCAGACCTTTAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCCTTGTACAGACGGATTCACTATTGAGTTATCAGACCTTTAAAG  400

seq1  GATAACTTAAATCAATGCTTCTCAAATTATTCTGTCAAATTAAAAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTTAAATCAATGCTTCTCAAATTATTCTGTCAAATTAAAAAAGAA  450

seq1  AGTGGGGACACTTCCAAATTATTTCTACAAAATGTTCCCTGACAAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGACACTTCCAAATTATTTCTACAAAATGTTCCCTGACAAGAAAA  500

seq1  GCTTACATTGTCAAGAAAAGCTGGTAGATACAATACAAGAA-CCATAGAG  549
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCTTACATTGTCAAGAAAAGCTGGTAGATACAATACAAGAACCCATAGAG  550

seq1  CAATTTTTAACTCCCCTGACTACTTGAAGTGAGATTTTTTTCATTTCTTC  599
      |||||||||||||||||||||||||||||||||| |||||||| ||||||
seq2  CAATTTTTAACTCCCCTGACTACTTGAAGTGAGA-TTTTTTCA-TTCTTC  598

seq1  TATTTTATATTTTGTTAGTCTATGGTTCTTGAGGGAAGCATTACCACCTC  649
      || ||||||||||| |||||||||| ||||||||||||||||||||||||
seq2  TA-TTTATATTTTG-TAGTCTATGGGTCTTGAGGGAAGCATTACCACCTC  646

seq1  AAGTAACATTATTTCATTTAAAATATGCATATGTGTAT-ATACATTCATA  698
      ||||||||||||||||||| |||||||||||||||||| ||||| |||||
seq2  AAGTAACATTATTTCATTT-AAATATGCATATGTGTATAATACA-TCATA  694

seq1  TGTATTATATGTAATTTCAGGTAAACATGAAATGTCATGATTCCTTATAG  748
      |||||||||||| |||||| ||||||||| ||||||||||| | | ||||
seq2  TGTATTATATGT-ATTTCA-GTAAACATG-AATGTCATGATCCTTAATAG  741

seq1  -CCTTTCGA--GTGTCTATAGTGCTTCATATGAC  779
       ||||||||  ||||||||||||||  |||||||
seq2  CCCTTTCGAGGGTGTCTATAGTGCTCAATATGAC  775


seq1: chr9_92327243_92327727
seq2: B6Ng01-215E17.g_65_549 (reverse)

seq1  TCCCTTTCCCCTTTCCCCTTTCCCTTTCCCCTTTCCCCTTTCCCTTTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCCCCTTTCCCCTTTCCCTTTCCCCTTTCCCCTTTCCCTTTCCC  50

seq1  CTTTCCCTTTCCTGTCTATATCTGCTTATAAGAGGCAGCTTTTCAAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCTTTCCTGTCTATATCTGCTTATAAGAGGCAGCTTTTCAAATCA  100

seq1  GTATTTAAACCCACAATTCCTGTGGAGCCCATGTTAGACAGAATATGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAAACCCACAATTCCTGTGGAGCCCATGTTAGACAGAATATGAGT  150

seq1  CTCCTGTAAGACTTATTAGAGCAATGTATCTTCATACCAGCTTTAAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTAAGACTTATTAGAGCAATGTATCTTCATACCAGCTTTAAGTAT  200

seq1  CAAAAGGCTATATTTCTCTCTTTATATCAATGAATTACCTGGTCTGGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGCTATATTTCTCTCTTTATATCAATGAATTACCTGGTCTGGAGC  250

seq1  CCTTTGTACCTTTGTCTCCCAATTCTTTATTCATGGGGGGAGCTTGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTACCTTTGTCTCCCAATTCTTTATTCATGGGGGGAGCTTGTTTG  300

seq1  GAGGTGGGGGAGTTAGGGTGGGGAGCAAAGAATATAGAGAAGCAAACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGGGGAGTTAGGGTGGGGAGCAAAGAATATAGAGAAGCAAACACA  350

seq1  GAAAGGCTCTCTCGGGCATAGATGCCTCTCTGATCTTCTCTGTAGGCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCTCTCTCGGGCATAGATGCCTCTCTGATCTTCTCTGTAGGCCCC  400

seq1  TCAAACCCAGTCAGCTTCAAATCCACAGCGCTACAGCCTATATCACTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCCAGTCAGCTTCAAATCCACAGCGCTACAGCCTATATCACTGCC  450

seq1  CAAGCCCCATTCAGGGGTTGGAGGGCAGTGAATTC  485
      |||||||||||||||||||||||||||||||||||
seq2  CAAGCCCCATTCAGGGGTTGGAGGGCAGTGAATTC  485


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