BAC Information

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BAC

Clone NameB6Ng01-219P11
Chromosome9 (Build37)
Map Location 29,147,767 - 29,342,838
singlet/doubletdoublet
Overlap geneHnt
Upstream geneOpcml, LOC625222
Downstream geneSnx19, LOC666478
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219P11.bB6Ng01-219P11.g
ACCGA035650GA035651
length1,2121,172
definitionB6Ng01-219P11.b B6Ng01-219P11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,147,767 - 29,148,966)(29,341,675 - 29,342,838)
sequence
gaattcctcacagacttcagtgtgctaacgtgtaccacaatcctccaagc
tctggttacataaacagcattcggcagacacatattgataaaatgtggat
acttctagtttggaaactgaaaggagaaaaaagtggagtctaatcttatt
gcatggagccctgccatcccctgtggtggcttaggggggtagagaatagg
acaggaagcacaaatcttattagccagagaaggtctagcagatttttttc
ccttctgattttattagctttcgttccatgctgatagataatattttttt
ccagaagaacagagtctctgacccaaacaatttgaaagccgctgatgttc
cctctttttgatggccttccatgaggtcaatactttgaagataaataggg
ataaaatattgatatcattagcttgcctgaaatctctggtttcattttct
gatagttcgggcacccatgttttctggcctatgctttcattccttccatt
ttcaattctttcctaatggtcaacactgtgagatataccgttatttctga
aataatctttatctgaccaaataaatcacgcgcacccctcatccttcaca
ttctagaagtcaaatctcagttcactcaaggtccccttctctacttccct
cctgctggccatggaaccttcttaggactgtgaacccttgaacgagagcc
tcttcctggactatcactccagctgtcccctgagagtttctgagaaccat
tcttttgctcctccatccatgattcatttttcttcataaattactttggt
gtcaaacttgcaggtcaggggccacatatgggagagtccgtgtacttcac
tatcaatggttgtctgtgaatgaaaatcaatctatctttcccttcctcct
tcccttcctcccttcctccttcctccctcactcaaagtagctcacactgt
gttctattgcaaaaatttcctacttcattggttggcaggattttttatag
tatctagtaaaataaattaaataaataattaaatattcaatcttgtccct
ttcgcctttgacaattcttagcttcaccttaatcttgggtaagagcattt
taaatcattgttcatgccagtatcaattgtttgcaacagctttatatcaa
ttggggtactgagtgaattagttcatggggcctgccgagagcttaaaatc
acttttttattt

gaattctggttcccatagccctggaaacccatctctgagatggcagaggt
tgttgtggacttgggcataggtggttgtggacacgttcagttcacctcat
gcagcctatgctaatgtggctacgtaagacatcaaacgtttagagaactc
attatcttgatttgaaaacagaaaaacagtaatcacctccaaggaagatt
taataagacagtgaactcaaagcaccctggaacaatgcttggcaccccct
aggtcctcagtaaggctctattctctacacgctgggcaccaagccaggaa
gaatgggcaatgctgaggaaatcagagtgtcccttttagtatttgtgcaa
aaagcaacaacaacaacaacaacaacaatggatttaccaacaaatgcaaa
agagttccaactttttcatccttagtgtttcaaaaactattgcagtctta
gttgcctcctcgggcagacgtggcctaaagaagtaaagtttccatcaagc
taaatgcaaatcagataggctaaaaagtttccctgtcacttagcccatta
tcctgtttgtgagcagagattatactctgaagctaaagcatgggctccta
tcccttgtagtccagatccctggggtctcagcacggagtcagaaacagaa
aaccacaggtgtccccagccagagccctgcagcagactcctatgggacac
acaagttggataggcgcattctgctttgtttaaacacttggctttgttgc
ttttaatcacgggttcccccgagtgcacatgctttctgtaccacacacgg
gctgcgtacctaacagatattgtgaaatacaacagcttgattcccctgct
gcttggatgatgggcaattggctaggtgtgcttcctcttccttctccggg
cccagcccccaaggagatttcaagtgcaatttggcccttgcacatcaaaa
caagcaattttcctgtagaaatcacaacctccaaaaaacctcttccccta
attcaaattctattcaagccaattttaggggttggagccttgtgttctgt
ttatcaggaatggagtttgaaattgccccttaatggatcacaagctgctc
accaacatctttccatatggatgttttgaattaatgcttgaactgccgtg
ctcctgacctggaatttgattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_29147767_29148966
seq2: B6Ng01-219P11.b_47_1258

seq1  GAATTCCTCACAGACTTCAGTGTGCTAACGTGTACCACAATCCTCCAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCACAGACTTCAGTGTGCTAACGTGTACCACAATCCTCCAAGC  50

seq1  TCTGGTTACATAAACAGCATTCGGCAGACACATATTGATAAAATGTGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTACATAAACAGCATTCGGCAGACACATATTGATAAAATGTGGAT  100

seq1  ACTTCTAGTTTGGAAACTGAAAGGAGAAAAAAGTGGAGTCTAATCTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTAGTTTGGAAACTGAAAGGAGAAAAAAGTGGAGTCTAATCTTATT  150

seq1  GCATGGAGCCCTGCCATCCCCTGTGGTGGCTTAGGGGGGTAGAGAATAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGAGCCCTGCCATCCCCTGTGGTGGCTTAGGGGGGTAGAGAATAGG  200

seq1  ACAGGAAGCACAAATCTTATTAGCCAGAGAAGGTCTAGCAGATTTTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGCACAAATCTTATTAGCCAGAGAAGGTCTAGCAGATTTTTTTC  250

seq1  CCTTCTGATTTTATTAGCTTTCGTTCCATGCTGATAGATAATATTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGATTTTATTAGCTTTCGTTCCATGCTGATAGATAATATTTTTTT  300

seq1  CCAGAAGAACAGAGTCTCTGACCCAAACAATTTGAAAGCCGCTGATGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGAACAGAGTCTCTGACCCAAACAATTTGAAAGCCGCTGATGTTC  350

seq1  CCTCTTTTTGATGGCCTTCCATGAGGTCAATACTTTGAAGATAAATAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTTTGATGGCCTTCCATGAGGTCAATACTTTGAAGATAAATAGGG  400

seq1  ATAAAATATTGATATCATTAGCTTGCCTGAAATCTCTGGTTTCATTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATATTGATATCATTAGCTTGCCTGAAATCTCTGGTTTCATTTTCT  450

seq1  GATAGTTCGGGCACCCATGTTTTCTGGCCTATGCTTTCATTCCTTCCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTTCGGGCACCCATGTTTTCTGGCCTATGCTTTCATTCCTTCCATT  500

seq1  TTCAATTCTTTCCTAATGGTCAACACTGTGAGATATACCGTTATTTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTCTTTCCTAATGGTCAACACTGTGAGATATACCGTTATTTCTGA  550

seq1  AATAATCTTTATCTGACCAAATAAATCACGCGCACCCCTCATCCTTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCTTTATCTGACCAAATAAATCACGCGCACCCCTCATCCTTCACA  600

seq1  TTCTAGAAGTCAAATCTCAGTTCACTCAAGGTCCCCTTCTCTACTTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAAGTCAAATCTCAGTTCACTCAAGGTCCCCTTCTCTACTTCCCT  650

seq1  CCTGCTGGCCATGGAACCTTCTTAGGACTGTGAACCCTTGAACGAGAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGGCCATGGAACCTTCTTAGGACTGTGAACCCTTGAACGAGAGCC  700

seq1  TCTTCCTGGACTATCACTCCAGCTGTCCCCTGAGAGTTTCTGAGAACCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGGACTATCACTCCAGCTGTCCCCTGAGAGTTTCTGAGAACCAT  750

seq1  TCTTTTGCTCCTCCATCCATGATTCATTTTTCTTCATAAATTAC-TTGGT  799
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTTTTGCTCCTCCATCCATGATTCATTTTTCTTCATAAATTACTTTGGT  800

seq1  GTCAAACTTGCAGGTCAGGGGCCACATAT-GGAGAGTCCGTGTACTTCAC  848
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTCAAACTTGCAGGTCAGGGGCCACATATGGGAGAGTCCGTGTACTTCAC  850

seq1  TATCAATGGTTGTCTGTGAATGAAAATCAATCTATCTTTCCCTTCCTCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATGGTTGTCTGTGAATGAAAATCAATCTATCTTTCCCTTCCTCCT  900

seq1  TCCCTTCCTCCCTTCCTCCCTTCCTCCCTCACTCAAAGTAGCTCACACTG  948
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCCCTTCCTCCCTTCCT-CCTTCCTCCCTCACTCAAAGTAGCTCACACTG  949

seq1  TGTTCTATTGC-AAAATTTCCTACTTCATTGGTTGGCAG--ATTTTTATA  995
      ||||||||||| |||||||||||||||||||||||||||   ||||||||
seq2  TGTTCTATTGCAAAAATTTCCTACTTCATTGGTTGGCAGGATTTTTTATA  999

seq1  GTATCTAGTAAAATAAA-TAAATAAATAAATAAATAATTCAAATCTGTCC  1044
      ||||||||||||||||| ||||||||||| ||||| ||||||   |||||
seq2  GTATCTAGTAAAATAAATTAAATAAATAATTAAAT-ATTCAATCTTGTCC  1048

seq1  C-TTCGCCTTTGACAA-TCTTAGCCTTCA-CTAAATC-TGGTTAAGGAAG  1090
      | |||||||||||||| |||||| ||||| || |||| ||| ||||  ||
seq2  CTTTCGCCTTTGACAATTCTTAG-CTTCACCTTAATCTTGGGTAAG--AG  1095

seq1  CATTT--AATCAT--GTCATGCAAGTA-CAAT--GTTGCAACAGCTATAT  1133
      |||||  ||||||   |||||| |||| ||||   ||||||||||| |||
seq2  CATTTTAAATCATTGTTCATGCCAGTATCAATTGTTTGCAACAGCTTTAT  1145

seq1  A-CAATTGGGGTAACTAGTGAATTAGTCAGTGGGGGCTGGCGAGAGCTTA  1182
      | |||||||||||   |||||||||||   ||||| ||| ||||||||||
seq2  ATCAATTGGGGTACTGAGTGAATTAGTTCATGGGGCCTGCCGAGAGCTTA  1195

seq1  AAATCAACCTTTTTATTT  1200
      ||||| || |||||||||
seq2  AAATC-ACTTTTTTATTT  1212


seq1: chr9_29341675_29342838
seq2: B6Ng01-219P11.g_66_1237 (reverse)

seq1  GAATCAAATTCCAAGGTTGGAGAGCACGGGCCAAGTCCAGCCATTAATTC  50
      |||||||||||| ||||  | ||||||||    ||| ||  |||||||||
seq2  GAATCAAATTCC-AGGTCAG-GAGCACGG---CAGTTCAAGCATTAATTC  45

seq1  -AAACAACCCTAT-GAAAGATTGTGGTGAGCAGC-TGTGATTCCATTAAA  97
       ||||| || ||| |||||||  ||||||||||| ||||| |||||||| 
seq2  AAAACATCCATATGGAAAGATGTTGGTGAGCAGCTTGTGA-TCCATTAA-  93

seq1  GGGGGCAATTTC-AACTCCATTTCCTTGATAAACAG-ACACAA-GCTC--  142
       ||||||||||| |||||||||  | |||||||||| |||||| ||||  
seq2  -GGGGCAATTTCAAACTCCATT--CCTGATAAACAGAACACAAGGCTCCA  140

seq1  ACCCCTAAATTGGGCTTG-ATAG-ATTTG-ATTAGGGG-AGAG--TTTTT  186
      ||||||||| | |||||| |||| ||||| |||||||| ||||  |||||
seq2  ACCCCTAAAATTGGCTTGAATAGAATTTGAATTAGGGGAAGAGGTTTTTT  190

seq1  GGAGGTTGTGATTTCTACAGGAAAATTGCT--GTTTGATGTGCAA-GGCC  233
      ||||||||||||||||||||||||||||||   |||||||||||| ||||
seq2  GGAGGTTGTGATTTCTACAGGAAAATTGCTTGTTTTGATGTGCAAGGGCC  240

seq1  AAATTGCACTTGAAATCTCCTTGGGGGCTGGGGCCGGAGAAGGAAGAGGA  283
      |||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  AAATTGCACTTGAAATCTCCTTGGGGGCTGGGCCCGGAGAAGGAAGAGG-  289

seq1  AAGCACACCTAGCCAATTG-CCATCATCCAAGCAGCAGGGGAATCAAGCT  332
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAGCACACCTAGCCAATTGCCCATCATCCAAGCAGCAGGGGAATCAAGCT  339

seq1  GTTGTA-TTCACAATATCTGTTAGGTACGCAGCCCGTGTGTGGTACAGAA  381
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATTTCACAATATCTGTTAGGTACGCAGCCCGTGTGTGGTACAGAA  389

seq1  AGCATGTGCACTCGGGGGAACCCGTGATTAAAAGCAACAAAGCCAAGTGT  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTGCACTCGGGGGAACCCGTGATTAAAAGCAACAAAGCCAAGTGT  439

seq1  TTAAACAAAGCAGAATGCGCCTATCCAACTTGTGTGTCCCATAGGAGTCT  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAAAGCAGAATGCGCCTATCCAACTTGTGTGTCCCATAGGAGTCT  489

seq1  GCTGCAGGGCTCTGGCTGGGGACACCTGTGGTTTTCTGTTTCTGACTCCG  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGGGCTCTGGCTGGGGACACCTGTGGTTTTCTGTTTCTGACTCCG  539

seq1  TGCTGAGACCCCAGGGATCTGGACTACAAGGGATAGGAGCCCATGCTTTA  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGACCCCAGGGATCTGGACTACAAGGGATAGGAGCCCATGCTTTA  589

seq1  GCTTCAGAGTATAATCTCTGCTCACAAACAGGATAATGGGCTAAGTGACA  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGAGTATAATCTCTGCTCACAAACAGGATAATGGGCTAAGTGACA  639

seq1  GGGAAACTTTTTAGCCTATCTGATTTGCATTTAGCTTGATGGAAACTTTA  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACTTTTTAGCCTATCTGATTTGCATTTAGCTTGATGGAAACTTTA  689

seq1  CTTCTTTAGGCCACGTCTGCCCGAGGAGGCAACTAAGACTGCAATAGTTT  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTAGGCCACGTCTGCCCGAGGAGGCAACTAAGACTGCAATAGTTT  739

seq1  TTGAAACACTAAGGATGAAAAAGTTGGAACTCTTTTGCATTTGTTGGTAA  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACACTAAGGATGAAAAAGTTGGAACTCTTTTGCATTTGTTGGTAA  789

seq1  ATCCATTGTTGTTGTTGTTGTTGTTGTTGCTTTTTGCACAAATACTAAAA  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTGTTGTTGTTGTTGTTGTTGTTGCTTTTTGCACAAATACTAAAA  839

seq1  GGGACACTCTGATTTCCTCAGCATTGCCCATTCTTCCTGGCTTGGTGCCC  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACTCTGATTTCCTCAGCATTGCCCATTCTTCCTGGCTTGGTGCCC  889

seq1  AGCGTGTAGAGAATAGAGCCTTACTGAGGACCTAGGGGGTGCCAAGCATT  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGTAGAGAATAGAGCCTTACTGAGGACCTAGGGGGTGCCAAGCATT  939

seq1  GTTCCAGGGTGCTTTGAGTTCACTGTCTTATTAAATCTTCCTTGGAGGTG  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGGTGCTTTGAGTTCACTGTCTTATTAAATCTTCCTTGGAGGTG  989

seq1  ATTACTGTTTTTCTGTTTTCAAATCAAGATAATGAGTTCTCTAAACGTTT  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGTTTTTCTGTTTTCAAATCAAGATAATGAGTTCTCTAAACGTTT  1039

seq1  GATGTCTTACGTAGCCACATTAGCATAGGCTGCATGAGGTGAACTGAACG  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTTACGTAGCCACATTAGCATAGGCTGCATGAGGTGAACTGAACG  1089

seq1  TGTCCACAACCACCTATGCCCAAGTCCACAACAACCTCTGCCATCTCAGA  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACAACCACCTATGCCCAAGTCCACAACAACCTCTGCCATCTCAGA  1139

seq1  GATGGGTTTCCAGGGCTATGGGAACCAGAATTC  1164
      |||||||||||||||||||||||||||||||||
seq2  GATGGGTTTCCAGGGCTATGGGAACCAGAATTC  1172


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