BAC Information

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BAC

Clone NameB6Ng01-224D03
Chromosome9 (Build37)
Map Location 68,445,528 - 68,446,581
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c, LOC100041451
Downstream geneRora, 9530091C08Rik, Narg2, EG665815, EG244913, Anxa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224D03.bB6Ng01-224D03.g
ACCGA038725GA038726
length1,2031,053
definitionB6Ng01-224D03.b B6Ng01-224D03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccttatccagggatccaccccataatc
agcatccaaacgctgacactattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgcccacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagtacccaaggagctaaagggatctgcacctat
agtggatcacattatgacctaaccagtaccccggagctcttgactctagc
tgcattttgtatcaaagattgctagtcgcatcactggaaagagagcccat
gacaacacaaacttatatgcccagaacagggatgcaaggtcaaagggatt
gcggttaggggattgggggtctcaacagtgactatctgatacgttcagtg
act
gaattcagagatccacctgcctatgccttcttgataatggaattttaggc
atgtgccaccatacctgaatgaccctttggacttatttatacacctgaaa
tattttgctatataatattttgatgatctcagaccagaagagttgtaggt
cagaaggaattgcttaagatgtagaggagatctctcccaccagagcattg
tctagaagcctttggaaggtggctgctgatcctaagctagcagtgaaaga
gagaaagcgcctccaaaatctgccccccagaggagaaacttggcaaatag
aacaaatggatgaattcacagctgaaaaagtacagagaacatcaccttcc
aaaagacttcagaaacaaatgtttaaaaatggccaagagacaggcatcag
cagatttgatattagaagatgtaaacagaggagccagtgcaaaagtaaat
atcagcccaagaaggagtaaggtttgctgtcataactgtagactcaatag
accatgtcaaagataaccaagacccattagacgatagaagaccaccatta
gatgttctgggacaggtacagctacctagaaggccttatagcaggaccaa
ggctcccctgaacacttggtgatttccatcagtgggttgtagcatcaccc
cacttggaggagtccagtctgccccttttgaccatctacttgacaatttt
agacatacagagtcagtctcatgatgatctgatccaatccctagcaacca
gtctcttcaaatgtatttcccatcgtttctaatgtctctgagcaaaccct
ggtagatgagataagtgaattaaccccatgttgttgttggaatagagtgt
catgtttaggtaaacacaaacaaaaatgttctccgtgagcaacacagttc
agacacaaaagggaatgaagggatccagagaatgcctgtgcagcatacac
acagtagtggaaaagatccccaaatgacagctgaccacatcgctatctga
aactcgagcatcactgaacaagatccctcaggtgatcatcatcatcatct
atc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_68445528_68446581
seq2: B6Ng01-224D03.g_65_1117 (reverse)

seq1  GATAGAT--------AGATCA-CTGAGGGGAATCTTGGTTCAGTGATGCT  41
      |||||||         ||||| |||||||  ||||| |||||||||||||
seq2  GATAGATGATGATGATGATCACCTGAGGG--ATCTT-GTTCAGTGATGCT  47

seq1  CGAGTTTCAAGATTAGCGATGTGGTCAGCTTGTTCATTTGGGGATCTTTT  91
      |||||||| ||| |||||||||||||||||   ||||||||||||| |||
seq2  CGAGTTTC-AGA-TAGCGATGTGGTCAGCT--GTCATTTGGGGATC-TTT  92

seq1  TCCACTACTGTGTGTATGCCTGCCACAGGCATTCTCTGGATCCCTTCATT  141
      |||||||||||||||||| ||| |||||||||||||||||||||||||||
seq2  TCCACTACTGTGTGTATG-CTG-CACAGGCATTCTCTGGATCCCTTCATT  140

seq1  CCCTTTTGTGTCTGAACTGTGTTGCTCACGGAGAACATTTTTGTTTGTGT  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTGTGTCTGAACTGTGTTGCTCACGGAGAACATTTTTGTTTGTGT  190

seq1  TTACCTAAACATGACACTCTATTCCAACAACAACATGGGGTTAATTCACT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTAAACATGACACTCTATTCCAACAACAACATGGGGTTAATTCACT  240

seq1  TATCTCATCTACCAGGGTTTGCTCAGAGACATTAGAAACGATGGGAAATA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCATCTACCAGGGTTTGCTCAGAGACATTAGAAACGATGGGAAATA  290

seq1  CATTTGAAGAGACTGGTTGCTAGGGATTGGATCAGATCATCATGAGACTG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAAGAGACTGGTTGCTAGGGATTGGATCAGATCATCATGAGACTG  340

seq1  ACTCTGTATGTCTAAAATTGTCAAGTAGATGGTCAAAAGGGGCAGACTGG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTATGTCTAAAATTGTCAAGTAGATGGTCAAAAGGGGCAGACTGG  390

seq1  ACTCCTCCAAGTGGGGTGATGCTACAACCCACTGATGGAAATCACCAAGT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCCAAGTGGGGTGATGCTACAACCCACTGATGGAAATCACCAAGT  440

seq1  GTTCAGGGGAGCCTTGGTCCTGCTATAAGGCCTTCTAGGTAGCTGTACCT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGGGGAGCCTTGGTCCTGCTATAAGGCCTTCTAGGTAGCTGTACCT  490

seq1  GTCCCAGAACATCTAATGGTGGTCTTCTATCGTCTAATGGGTCTTGGTTA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGAACATCTAATGGTGGTCTTCTATCGTCTAATGGGTCTTGGTTA  540

seq1  TCTTTGACATGGTCTATTGAGTCTACAGTTATGACAGCAAACCTTACTCC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGACATGGTCTATTGAGTCTACAGTTATGACAGCAAACCTTACTCC  590

seq1  TTCTTGGGCTGATATTTACTTTTGCACTGGCTCCTCTGTTTACATCTTCT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGGCTGATATTTACTTTTGCACTGGCTCCTCTGTTTACATCTTCT  640

seq1  AATATCAAATCTGCTGATGCCTGTCTCTTGGCCATTTTTAAACATTTGTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAAATCTGCTGATGCCTGTCTCTTGGCCATTTTTAAACATTTGTT  690

seq1  TCTGAAGTCTTTTGGAAGGTGATGTTCTCTGTACTTTTTCAGCTGTGAAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGTCTTTTGGAAGGTGATGTTCTCTGTACTTTTTCAGCTGTGAAT  740

seq1  TCATCCATTTGTTCTATTTGCCAAGTTTCTCCTCTGGGGGGCAGATTTTG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCATTTGTTCTATTTGCCAAGTTTCTCCTCTGGGGGGCAGATTTTG  790

seq1  GAGGCGCTTTCTCTCTTTCACTGCTAGCTTAGGATCAGCAGCCACCTTCC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCGCTTTCTCTCTTTCACTGCTAGCTTAGGATCAGCAGCCACCTTCC  840

seq1  AAAGGCTTCTAGACAATGCTCTGGTGGGAGAGATCTCCTCTACATCTTAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTTCTAGACAATGCTCTGGTGGGAGAGATCTCCTCTACATCTTAA  890

seq1  GCAATTCCTTCTGACCTACAACTCTTCTGGTCTGAGATCATCAAAATATT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTCCTTCTGACCTACAACTCTTCTGGTCTGAGATCATCAAAATATT  940

seq1  ATATAGCAAAATATTTCAGGTGTATAAATAAGTCCAAAGGGTCATTCAGG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCAAAATATTTCAGGTGTATAAATAAGTCCAAAGGGTCATTCAGG  990

seq1  TATGGTGGCACATGCCTAAAATTCCATTATCAAGAAGGCATAGGCAGGTG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGGCACATGCCTAAAATTCCATTATCAAGAAGGCATAGGCAGGTG  1040

seq1  GATCTCTGAATTC  1054
      |||||||||||||
seq2  GATCTCTGAATTC  1053