BAC Information

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BAC

Clone NameB6Ng01-224E04
Chromosome9 (Build37)
Map Location 84,604,217 - 84,736,966
singlet/doubletdoublet
Overlap genenone
Upstream geneElovl4, Ttk, EG546150, Bckdhb, EG666669
Downstream geneLOC666672, BC023892, Ibtk, 4933431K14Rik, EG434426, 9330154J02Rik, Tpbg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224E04.bB6Ng01-224E04.g
ACCGA038769GA038770
length1,1811,171
definitionB6Ng01-224E04.b B6Ng01-224E04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,604,217 - 84,605,413)(84,735,802 - 84,736,966)
sequence
gaattctaggtgctagcatctctctactagagttagattgagtgacttgg
gaaattaagatgtgaatgtttccagagagtcaataatgattggattggga
aattgtgtgaggttactctagtataaggtgcaaagcctgtaggttgttct
caggcaaactctgatttcctctagtgctatctctgctaaggactggcctc
tacaatgtcacaggagatgtgctccaaattaaggttcagacacttcgatg
tattttctccaccttctacaatatgatggttccacctatcacctttgcta
cagactgtgctagaaataacagagttttctttaaaatatgtttatttcta
ggttctatatacaaaagacatttcatccccagggttctcaaatcttcaaa
agcttttcttcagactccagcatctagccatgttgagtgttgaatgacag
gggacattgctttcatcagaattatcttattcccatgtttgcaattgtat
tactcaatttaattagagatcatgctgaaaataagtcattaaagttcctt
aagatattagaaatagcattttgagtcctgtgaagtcttaggaggagtta
tgtttgtggtgtgaatgtcatttaagaagctggctctgttaaatgccttc
tgttctgatgatagtcccacatttctctttgctatgtactctcagcagta
cccatcacacagtggcactgaagtgaacttcttcactgtccaactatgca
caattatacaagccagacctttaccaaatgatcgaaacattatcaattta
ttccatcttgaataaccactggagagttagctttaatgtcagatatacat
atctactttacctataatggtatattctacccagatcattctattgacta
tagatttcattaaattaaacaaaataaataaaatatctgaaagtacaata
gcctttcaaacaattctaaaattacactttaaggttttatgctgcctaca
tactacgtttaatctgtttttttcattactcagtgatattagagttgtta
agaaataagcaaacatttttgagtaggaaacacccactggccatagcaaa
tcgaactaccttggaattccatcaagaagtgaataaataatcggatgact
ggcaaatgaattagtcagtatgctggctttt

gaattctaagaccatactgccttctggcctcatttgctgagtgcacacag
gaatgctatctttttttaatttattttagtatcagtttgaatattggcta
caatacatatcacatatgaactatggaaaagtgagattctcacgaaaatg
atgaatgattcatagcctctttgtgacaatgtttatttgcaaaactaaat
atttctactttgaaaatttacttgaatgccacggtcatacctgaaataga
gcttcagattcaaaatgcacaacttgtaaagcacattattagaaaacaaa
caaaacaaaacaaaacaatgcattgtatgcataagccagaatttgattgt
taattaagatagttaaatatttaaccataaaaaaattaaatgaaaagtta
aaaacattcccaaatattttagtaagctttatccaataaatacattatta
atttaccatatacaagaatactatcttttgcctgaaacatatattcttag
tttttataaatacaaatttataatttatacttttcaacaaaaagctatat
aataatgcttttgattactaatatattttcacatcataccactgtcttca
aataaaagaagccagaaacattcgtaccaaagataaaactaacaagatca
tttctacattttgctatttcaaaaacttaccaaattcacaatttaatacc
aaaatatttaagaatctactgagaaatctacttgatttacattcccaggc
cccttctgtgtgctttccctaaaagcattttaccctgactctgtgcttcg
gtctcagttaaggattataaagcaaggaatcactcacttgtgcatgcaca
taccttcccagcaaagcctatttacatgaatgcatacattttgggttgtg
agtagcacatgacaaatgtgaatgaggaaattgtcactgaatccgagaaa
ggaggaaggccacttggaccacaagggaaagcaacagaataacatgggcc
cttggtgaagacattgagcaaaagtagaggtaagaaaaaggatgcgtgtt
taagaaaatacttttctttggttatgtacttctgatgaactgcagaggac
tcatggagggaagaagcaaggaagggatcctacattgacctgaatataca
tgggagaaattttgataatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_84604217_84605413
seq2: B6Ng01-224E04.b_46_1226

seq1  GAATTCTAGGTGCTAGCATCTCTCTACTAGAGTTAGATTGAGTGACTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGTGCTAGCATCTCTCTACTAGAGTTAGATTGAGTGACTTGG  50

seq1  GAAATTAAGATGTGAATGTTTCCAGAGAGTCAATAATGATTGGATTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAAGATGTGAATGTTTCCAGAGAGTCAATAATGATTGGATTGGGA  100

seq1  AATTGTGTGAGGTTACTCTAGTATAAGGTGCAAAGCCTGTAGGTTGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGTGAGGTTACTCTAGTATAAGGTGCAAAGCCTGTAGGTTGTTCT  150

seq1  CAGGCAAACTCTGATTTCCTCTAGTGCTATCTCTGCTAAGGACTGGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAACTCTGATTTCCTCTAGTGCTATCTCTGCTAAGGACTGGCCTC  200

seq1  TACAATGTCACAGGAGATGTGCTCCAAATTAAGGTTCAGACACTTCGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGTCACAGGAGATGTGCTCCAAATTAAGGTTCAGACACTTCGATG  250

seq1  TATTTTCTCCACCTTCTACAATATGATGGTTCCACCTATCACCTTTGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTCCACCTTCTACAATATGATGGTTCCACCTATCACCTTTGCTA  300

seq1  CAGACTGTGCTAGAAATAACAGAGTTTTCTTTAAAATATGTTTATTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGTGCTAGAAATAACAGAGTTTTCTTTAAAATATGTTTATTTCTA  350

seq1  GGTTCTATATACAAAAGACATTTCATCCCCAGGGTTCTCAAATCTTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTATATACAAAAGACATTTCATCCCCAGGGTTCTCAAATCTTCAAA  400

seq1  AGCTTTTCTTCAGACTCCAGCATCTAGCCATGTTGAGTGTTGAATGACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTCTTCAGACTCCAGCATCTAGCCATGTTGAGTGTTGAATGACAG  450

seq1  GGGACATTGCTTTCATCAGAATTATCTTATTCCCATGTTTGCAATTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATTGCTTTCATCAGAATTATCTTATTCCCATGTTTGCAATTGTAT  500

seq1  TACTCAATTTAATTAGAGATCATGCTGAAAATAAGTCATTAAAGTTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAATTTAATTAGAGATCATGCTGAAAATAAGTCATTAAAGTTCCTT  550

seq1  AAGATATTAGAAATAGCATTTTGAGTCCTGTGAAGTCTTAGGAGGAGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTAGAAATAGCATTTTGAGTCCTGTGAAGTCTTAGGAGGAGTTA  600

seq1  TGTTTGTGGTGTGAATGTCATTTAAGAAGCTGGCTCTGTTAAATGCCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGGTGTGAATGTCATTTAAGAAGCTGGCTCTGTTAAATGCCTTC  650

seq1  TGTTCTGATGATAGTCCCACATTTCTCTTTGCTATGTACTCTCAGCAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGATGATAGTCCCACATTTCTCTTTGCTATGTACTCTCAGCAGTA  700

seq1  CCCATCACACAGTGGCACTGAAGTGAACTTCTTCACTGTCCAACTATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCACACAGTGGCACTGAAGTGAACTTCTTCACTGTCCAACTATGCA  750

seq1  CAATTATACAAGCCAGACCTTTACCAAATGATCGAAACATTATCAATTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATACAAGCCAGACCTTTACCAAATGATCGAAACATTATCAATTTA  800

seq1  TTCCATCTTGAATAACCACTGGAGAGTTAGCTTTAATGTCAGATATACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCTTGAATAACCACTGGAGAGTTAGCTTTAATGTCAGATATACAT  850

seq1  ATCTACTTTACCTATAATGGTATATTCTACCCAGATCATTCTATTGACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTTTACCTATAATGGTATATTCTACCCAGATCATTCTATTGACTA  900

seq1  TAGATTTCATTAAATTAAACAAAATAAATAAAATATCTGAAAGTACAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTCATTAAATTAAACAAAATAAATAAAATATCTGAAAGTACAATA  950

seq1  GCCTTTCAAAACAATTCTAAAATTACACTTTAAGGTTTTATGCTGCCTAC  1000
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTC-AAACAATTCTAAAATTACACTTTAAGGTTTTATGCTGCCTAC  999

seq1  ATACTAAGGTTAAATCTGTTTTTTTCATTACTCAGTGATATTAGAGTTGT  1050
      ||||| | ||| ||||||||||||||||||||||||||||||||||||||
seq2  ATACT-ACGTTTAATCTGTTTTTTTCATTACTCAGTGATATTAGAGTTGT  1048

seq1  TAAAGAAATAAGCCAAAACATTTTTGAGTAGG-AACACCCACTGGCATTA  1099
      | |||||||||||  ||||||||||||||||| |||||||||||||  ||
seq2  T-AAGAAATAAGC--AAACATTTTTGAGTAGGAAACACCCACTGGCCATA  1095

seq1  GCAAATCCAAACCTAACCTTGAAATTTCAAATCAAGAAAGTGAAAATAAT  1149
      ||||||| ||  || |||||| |||| |  |||||| ||||||| | |||
seq2  GCAAATCGAA--CT-ACCTTGGAATTCC--ATCAAG-AAGTGAATA-AAT  1138

seq1  AATCCAGATGAACTGGCAAAAAAGGAATTAGTCAGTATGTCTGCTTTT  1197
      ||| | |||| ||||||   ||| |||||||||||||||   ||||||
seq2  AAT-CGGATG-ACTGGC---AAATGAATTAGTCAGTATGCTGGCTTTT  1181


seq1: chr9_84735802_84736966
seq2: B6Ng01-224E04.g_63_1233 (reverse)

seq1  ATATAATCAAAA--TCTCCCATGTATTTTCA-GTC-ATGTAGGAACTCCT  46
      |||| |||||||  |||||||||||| |||| ||| |||||||| | | |
seq2  ATATTATCAAAATTTCTCCCATGTATATTCAGGTCAATGTAGGATCCCTT  50

seq1  CC-TGCCTCTCCCCTCCATGAGTCTTCTGCAG-TCATCCAGAAGTACATT  94
      || ||| ||| ||||||||||||| ||||||| |||| ||||||||||| 
seq2  CCTTGCTTCTTCCCTCCATGAGTCCTCTGCAGTTCAT-CAGAAGTACATA  99

seq1  ACCAAAGAAAAGTTATTTTCTTTAAACACGCCATTCCTTTTC-TACCTCT  143
      |||||||||||| ||||||| ||||||||| ||| | ||||| |||||||
seq2  ACCAAAGAAAAG-TATTTTC-TTAAACACG-CATCCTTTTTCTTACCTCT  146

seq1  ACTTTTGCTCAATGTCTTCACCAA-GGCCCATGTTATTCTG-TGCTTTCC  191
      |||||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  ACTTTTGCTCAATGTCTTCACCAAGGGCCCATGTTATTCTGTTGCTTTCC  196

seq1  CTTGTGGTCCAAGTGGCCTTCCTCCTTTCTCGGATTCAGTGACAATTTCC  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGTCCAAGTGGCCTTCCTCCTTTCTCGGATTCAGTGACAATTTCC  246

seq1  TCATTCACATTTGTCATGTGCTACTCACAA-CCAAAATGTATGCATTCAT  290
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCATTCACATTTGTCATGTGCTACTCACAACCCAAAATGTATGCATTCAT  296

seq1  GTAAATAGGCTTTGCTGGGAAGGTATGTGCATGCACAAGTGAGTGATTCC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAGGCTTTGCTGGGAAGGTATGTGCATGCACAAGTGAGTGATTCC  346

seq1  TTGCTTTATAATCCTTAACTGAGACCGAAGCACAGAGTCAGGGTAAAATG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTATAATCCTTAACTGAGACCGAAGCACAGAGTCAGGGTAAAATG  396

seq1  CTTTTAGGGAAAGCACACAGAAGGGGCCTGGGAATGTAAATCAAGTAGAT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGGGAAAGCACACAGAAGGGGCCTGGGAATGTAAATCAAGTAGAT  446

seq1  TTCTCAGTAGATTCTTAAATATTTTGGTATTAAATTGTGAATTTGGTAAG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTAGATTCTTAAATATTTTGGTATTAAATTGTGAATTTGGTAAG  496

seq1  TTTTTGAAATAGCAAAATGTAGAAATGATCTTGTTAGTTTTATCTTTGGT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAAATAGCAAAATGTAGAAATGATCTTGTTAGTTTTATCTTTGGT  546

seq1  ACGAATGTTTCTGGCTTCTTTTATTTGAAGACAGTGGTATGATGTGAAAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAATGTTTCTGGCTTCTTTTATTTGAAGACAGTGGTATGATGTGAAAA  596

seq1  TATATTAGTAATCAAAAGCATTATTATATAGCTTTTTGTTGAAAAGTATA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAGTAATCAAAAGCATTATTATATAGCTTTTTGTTGAAAAGTATA  646

seq1  AATTATAAATTTGTATTTATAAAAACTAAGAATATATGTTTCAGGCAAAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAAATTTGTATTTATAAAAACTAAGAATATATGTTTCAGGCAAAA  696

seq1  GATAGTATTCTTGTATATGGTAAATTAATAATGTATTTATTGGATAAAGC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTATTCTTGTATATGGTAAATTAATAATGTATTTATTGGATAAAGC  746

seq1  TTACTAAAATATTTGGGAATGTTTTTAACTTTTCATTTAATTTTTTTATG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAAATATTTGGGAATGTTTTTAACTTTTCATTTAATTTTTTTATG  796

seq1  GTTAAATATTTAACTATCTTAATTAACAATCAAATTCTGGCTTATGCATA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATATTTAACTATCTTAATTAACAATCAAATTCTGGCTTATGCATA  846

seq1  CAATGCATTGTTTTGTTTTGTTTTGTTTGTTTTCTAATAATGTGCTTTAC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCATTGTTTTGTTTTGTTTTGTTTGTTTTCTAATAATGTGCTTTAC  896

seq1  AAGTTGTGCATTTTGAATCTGAAGCTCTATTTCAGGTATGACCGTGGCAT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTGCATTTTGAATCTGAAGCTCTATTTCAGGTATGACCGTGGCAT  946

seq1  TCAAGTAAATTTTCAAAGTAGAAATATTTAGTTTTGCAAATAAACATTGT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTAAATTTTCAAAGTAGAAATATTTAGTTTTGCAAATAAACATTGT  996

seq1  CACAAAGAGGCTATGAATCATTCATCATTTTCGTGAGAATCTCACTTTTC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGAGGCTATGAATCATTCATCATTTTCGTGAGAATCTCACTTTTC  1046

seq1  CATAGTTCATATGTGATATGTATTGTAGCCAATATTCAAACTGATACTAA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTCATATGTGATATGTATTGTAGCCAATATTCAAACTGATACTAA  1096

seq1  AATAAATTAAAAAAAGATAGCATTCCTGTGTGCACTCAGCAAATGAGGCC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTAAAAAAAGATAGCATTCCTGTGTGCACTCAGCAAATGAGGCC  1146

seq1  AGAAGGCAGTATGGTCTTAGAATTC  1165
      |||||||||||||||||||||||||
seq2  AGAAGGCAGTATGGTCTTAGAATTC  1171


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