BAC Information

Click to search

BAC

Clone NameB6Ng01-227N07
Chromosome9 (Build37)
Map Location 9,704,035 - 9,705,180
singlet/doubletsinglet
Overlap geneCntn5
Upstream genePgr, 9030420J04Rik
Downstream geneLOC665154, LOC100039970
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227N07.bB6Ng01-227N07.g
ACCGA041398GA041399
length1,1601,078
definitionB6Ng01-227N07.b B6Ng01-227N07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctccacatgaataggaataggaagaaagctaagatcttcctcact
atctttttcagaagattgcaattttatatttaagcttaaagagacttagg
accttgatagcagaagttgattttgtggtttagctacagtacctataaag
actttctgtttttcagttcattctttggaaagtgagcacacttactctct
agattctaccccaggcaggtatgtaagagaagaatgagctcatgcacttt
atgaccatgtgctataggaaaatcaaggactagtggagagacgcgcattc
aattcttgagatttaattaagagatgcttaatctttcacaggctcctttg
cttatctactcttcagtttcactttctttttagtttcatttgctcaagaa
cacatacacacacacacacacacacacacacacacacacacacacacaca
cacacactaaaataaccagagaaaatatcatacactatatagattactga
tattattcacatgatggaatatgctggtcatttattattagtgaacaaaa
aaacataaatcaacatatgcagactaagtttttaaaatgatgaattttgg
aaaagtctcactagctgcatttaacaagaataatgggattatgagttaga
ttttcaatctttggctaacgggcattttctaaaacatgcacaccatatct
cattaaatgacaaaatacaatattgacatataaaagggaaggataaagac
actgacctccctcagctgaacagatgactacgatctggctgaaaggccca
tcacctttattattataaacaccaactttgacctcaaagggtgtgagagg
agggacactttcatctcggtaaatgaacttgggacgcctccgaagacgta
accattttctccttccagccacgtgtttccattaggtctgaatgccacta
tgtagccgaagccttccccattctgaaactcttctgaatactggctaaag
aaggaataacacagttaaataatccaaaaaaataactgggctgagaacac
tatcctcttaaatgcttagcttgcaagagttacagaaattactatggtaa
aagatctcaagaaattttaataggacctggaagcttaggacaggccaatg
tactttggct

gaattctcagctgaggaatattgaagggctgagaagcatctgaaaaaaat
gttcaacacccttaatcgtcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagcagaatgtctaagatcaaaaattcaggtgacagt
agatgctggggcagatgcggagaaagaggaacactcctccattgctggtg
ggattgcaagctggtacaaggacaaatgctccactattttcatagcagcc
ttatttataatagccagaagctggaaagaacccagatgtccctcaacaga
ggaatcgatatagaaaatgtggtatatttacacaatggggtaataagccc
ctattaaaaacaatgaatttatgaaattcttaggcaaatgggtcgatctg
gaggatatcatcctgagtgaggtaacccaatcacaaaataacacatgtga
tatgcactcactgataagtggatattagacaagaaaattagaatatccaa
gatacaatttgcaaaacacaagaaaatcaagaaaaaggaagagcaaagtg
tggatacttaattcctcctttgaatagggaacaaaatacccatggaggga
gttacagagacaaagtttagagttgagaaaaaaggaatggccatccagtg
actgccccacccaaggatccatcccataaacaaccataaaaccgagacac
gattgcatatgttagaaagattttgctgacagaaccctgatatagctgtc
tcttgtgaggctatgccagtgcctggcaaatacagaagtggatgctccca
gtcatctattgaatggatcacagggcccccaatgaaaggagctagagaaa
gtacccaaggaactaaaggagtctgcaaccctataggaggaacaacaata
tggagtaaccagtaacccccccccccactcccccagagcttgtgtctcta
gttgcatatgtagcagaggatgccctagtcgaccatcaacggaggagaag
ccattgttctgcaaagattatatgccctacttacagggaatgccaggcca
ggattgggagtgagtgggttggggagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_9704035_9705180
seq2: B6Ng01-227N07.b_48_1207

seq1  GAATTCTCCACATGAATAGGAATAGGAAGAAAGCTAAGATCTTCCTCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCACATGAATAGGAATAGGAAGAAAGCTAAGATCTTCCTCACT  50

seq1  ATCTTTTTCAGAAGATTGCAATTTTATATTTAAGCTTAAAGAGACTTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTCAGAAGATTGCAATTTTATATTTAAGCTTAAAGAGACTTAGG  100

seq1  ACCTTGATAGCAGAAGTTGATTTTGTGGTTTAGCTACAGTACCTATAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGATAGCAGAAGTTGATTTTGTGGTTTAGCTACAGTACCTATAAAG  150

seq1  ACTTTCTGTTTTTCAGTTCATTCTTTGGAAAGTGAGCACACTTACTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTGTTTTTCAGTTCATTCTTTGGAAAGTGAGCACACTTACTCTCT  200

seq1  AGATTCTACCCCAGGCAGGTATGTAAGAGAAGAATGAGCTCATGCACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTACCCCAGGCAGGTATGTAAGAGAAGAATGAGCTCATGCACTTT  250

seq1  ATGACCATGTGCTATAGGAAAATCAAGGACTAGTGGAGAGACGCGCATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCATGTGCTATAGGAAAATCAAGGACTAGTGGAGAGACGCGCATTC  300

seq1  AATTCTTGAGATTTAATTAAGAGATGCTTAATCTTTCACAGGCTCCTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGAGATTTAATTAAGAGATGCTTAATCTTTCACAGGCTCCTTTG  350

seq1  CTTATCTACTCTTCAGTTTCACTTTCTTTTTAGTTTCATTTGCTCAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTACTCTTCAGTTTCACTTTCTTTTTAGTTTCATTTGCTCAAGAA  400

seq1  CACATACACACACACACACACACACACACACACACACACACACACACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACACACACACACACACACACACACACACACACACACACACACACA  450

seq1  CACACACTAAAATAACCAGAGAAAATATCATACACTATATAGATTACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTAAAATAACCAGAGAAAATATCATACACTATATAGATTACTGA  500

seq1  TATTATTCACATGATGGAATATGCTGGTCATTTATTATTAGTGAACAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTCACATGATGGAATATGCTGGTCATTTATTATTAGTGAACAAAA  550

seq1  AAACATAAATCAACATATGCAGACTAAGTTTTTAAAATGATGAATTTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAAATCAACATATGCAGACTAAGTTTTTAAAATGATGAATTTTGG  600

seq1  AAAAGTCTCACTAGCTGCATTTAACAAGAATAATGGGATTATGAGTTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCTCACTAGCTGCATTTAACAAGAATAATGGGATTATGAGTTAGA  650

seq1  TTTTCAATCTTTGGCTAACGGGCATTTTCTAAAACATGCACACCATATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATCTTTGGCTAACGGGCATTTTCTAAAACATGCACACCATATCT  700

seq1  CATTAAATGACAAAATACAATATTGACATATAAAAGGGAAGGATAAAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAATGACAAAATACAATATTGACATATAAAAGGGAAGGATAAAGAC  750

seq1  ACTGACCTCCCTCAGCTGAACAGATGACTACGATCTGGCTGAAAGGCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCTCCCTCAGCTGAACAGATGACTACGATCTGGCTGAAAGGCCCA  800

seq1  TCACCTTTATTATTATAAACACCAACTTTGACCTCAAAGGGTGTGAGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTTATTATTATAAACACCAACTTTGACCTCAAAGGGTGTGAGAGG  850

seq1  AGGGACACTTTCATCTCGGTAAATGAACTT-GGACGCCTCCGAAGACGTA  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGGGACACTTTCATCTCGGTAAATGAACTTGGGACGCCTCCGAAGACGTA  900

seq1  ACCATTTTCTCCTTCCAGCCACGTG-TTCCATTAGGTCTGAATGCCACTA  948
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACCATTTTCTCCTTCCAGCCACGTGTTTCCATTAGGTCTGAATGCCACTA  950

seq1  TGTAGCCGAAGCCTTCCCCATTCTGAAACTCTTCTG-ATACTGGCTAAAG  997
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGTAGCCGAAGCCTTCCCCATTCTGAAACTCTTCTGAATACTGGCTAAAG  1000

seq1  AAGG-ATAACACAGTT-AATAATCC-AAAAAATAACT-GGCTGAGGAACA  1043
      |||| ||||||||||| |||||||| ||||||||||| |||||| |||||
seq2  AAGGAATAACACAGTTAAATAATCCAAAAAAATAACTGGGCTGA-GAACA  1049

seq1  CTATCCTCTT-AATGCTTAGCTTTGCAGAGTTACAGAA--TACTATGGAA  1090
      |||||||||| ||||||||||||   ||||||||||||  |||||||| |
seq2  CTATCCTCTTAAATGCTTAGCTTGCAAGAGTTACAGAAATTACTATGGTA  1099

seq1  AAAGATCTC-AGAATTTTTTATAG--ACTGAAAGC-TAAGACA-GCACAT  1135
      ||||||||| |||| |||| ||||   ||| |||| || |||| ||  ||
seq2  AAAGATCTCAAGAAATTTTAATAGGACCTGGAAGCTTAGGACAGGCCAAT  1149

seq1  GTACTTTGGCT  1146
      |||||||||||
seq2  GTACTTTGGCT  1160


| Home | SequenceCutter | Blast | Download |