BAC Information

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BAC

Clone NameB6Ng01-229C04
Chromosome9 (Build37)
Map Location 80,398,416 - 80,516,099
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249, Myo6, Impg1
Downstream geneEG666534, LOC100039038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229C04.bB6Ng01-229C04.g
ACCGA042366GA042367
length1,1921,138
definitionB6Ng01-229C04.b B6Ng01-229C04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,514,905 - 80,516,099)(80,398,416 - 80,399,561)
sequence
gaattcttaaagaatcaatagaaacattcaagaaagaaaaagaagaagca
ggactataatggcattctatggcacccttcagctgaactacctcaaaaga
atgcagtttatttggttcctttgtgttaaatataaggagtcatagctttc
ttcactattactgctttggagtatctctttatgaaatggtaatgtacatt
atccattcattctggaagtagggacttcagcaatacctagattggggctg
ctatgaattgtgctattaaaacttttataatctttgacaagagatgcagt
attacttgggtataaatacagaaatatatgtcttacaatttgtatatgct
atcttagtagaagcaactacttcctactggaaataacatttaaaaataca
accttacatttctgataatagcctatgtgtttttttatgtttttttttct
ttttcttttctttttaacattttatcactgaactcagtggttctctgttt
ttgtttttatttttatttgaagattgtatttatttatttattttatatat
gtgacaagtacactgtagctgtcttcatacaaaccagaaatgggcatcgg
atcctgttaaaggtggttgtgagccaccatgtggttgctgggaattgaac
tcaggacctttggaagagcagtcagtcagatgctcttaaccgctgagcca
tctctccagcctgtttttttatgtttaacaatattttatttacttttaat
ttttgccatctgactcgcatatggttatttcatggtagttgaaatgtttg
tggtaaaatataaatataagctctcagatcacaaataatttacatatgtt
tatttgtatataaataaccttttatctaaatattatactacatttaaata
accattaaacctaaaatgccacatattattacagaaagacagatgggggg
tgaataggtaaataggcaggaatagaagatcaaatacccagacagtagtg
tatatgcctatgtgttcacatgcctgtttacatttctatcatggagaaaa
taacctttaaacgacaaagacactgctttagaaaatctcagttgcttatg
tgtgagtcaacccacaatgtgaaacaactgctttctctctcttagcttaa
taaaactccactaagagaacttgtaaatgattcaggaactgc

gaattctgtctttccctagagcttagtatttggtgagtgatttgaatatt
gcagggcctagtcatgggccacaccccttagagtagatgcatgtagtaga
gaatcatttaaatgggttcttacattatttaaatgacaaatggggtcccc
aatttcttgggaaagagaggcaaagaagattgctgcccggatattttcta
aatcaaacttagtgtcaaattattattatttagtatcactgtgtaaaata
agaccagtgtcttcagcaacagaggcttatttaatgatagattgactggt
ttgaattctaatctggacactagtatgccaagcttggcatgaaagagatg
ttacaggccttctgaaggttcctttgaaaagcaaagactcaagactagaa
ttccttcattatcagagactttggggaagcatagtatatattatagatga
gttgaatttcaaagataaaggaaatgaaacaaatatctgcatgtctcttc
tatgtaagggagtgctgagtccagctgcttctagagtccagtgcacttaa
cactacaggtactgacaggacaaaatcaatcatggaagttgccgaatctt
cccacaccactctcagaaagtcagctactattcttaggatacccttggtg
aatatctagtctgatactctctgacccattctagaatgaaaagaggatgc
ttggaacagacattttaatataagttaacaaaatccacattgcccacaga
atagctctgacctttcaagcaacaaatatgaaccatcacgaaaccaaata
tgagtgaccatcatctcagaaacacagattcagttttacccaaagaccat
gcacccaatatggttatcagttcggttctaattagacttttgatcactgt
aaaaagccagcatcttcagcagcagaggatttccaggtgctcctctggaa
ggcaaggactcaggattggagagttagtttatagttacagaagaaagaca
ttcacaaatcagatccttcaaatgcatcagtgagtccactgagcacgcag
ttacaggaaagcagggaacctcagatgttagctgccgcgccttaggactg
ttggttggttcaaattgagttttggtggtgtattccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_80514905_80516099
seq2: B6Ng01-229C04.b_44_1235 (reverse)

seq1  GCAGTTCTTGAATCATTTTACAAAGTCT-TTAGT-GAGTTTTATTTAGCT  48
      ||||||| ||||||| |||||||  ||| ||||| |||||||||| ||||
seq2  GCAGTTCCTGAATCA-TTTACAAGTTCTCTTAGTGGAGTTTTATTAAGCT  49

seq1  A--AGAGAGAAAGCAGTTGTTTCACATTGT-GGTTGACCTCACACATAGC  95
      |  ||||||||||||||||||||||||||| |||||| ||||||||||  
seq2  AAGAGAGAGAAAGCAGTTGTTTCACATTGTGGGTTGA-CTCACACATAAG  98

seq1  CAACTGAGATTTTCTAAAGCAGTGTCCTTTGTCGTTTAAAGGTTATTTTC  145
      ||||||||||||||||||||||||| ||||||||||||||||||||||| 
seq2  CAACTGAGATTTTCTAAAGCAGTGT-CTTTGTCGTTTAAAGGTTATTTT-  146

seq1  CTCCATGATTAGAAATGTAAACAGGCATGTGAACACATAGGCATATACAC  195
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGA-TAGAAATGTAAACAGGCATGTGAACACATAGGCATATACAC  195

seq1  TTACTGTCTGGGTATTTGATCTTCTTATTTCCTGCCTATTTACCTATTCA  245
       ||||||||||||||||||||||||   ||||||||||||||||||||||
seq2  -TACTGTCTGGGTATTTGATCTTCT--ATTCCTGCCTATTTACCTATTCA  242

seq1  CCCCCCATCTGTCTTTCTGTAATAATATGTGGCATTTTAGGTTTAATGGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCATCTGTCTTTCTGTAATAATATGTGGCATTTTAGGTTTAATGGT  292

seq1  TATTTAAATGTAGTATAATATTTAGATAAAAGGTTATTTATATACAAATA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAATGTAGTATAATATTTAGATAAAAGGTTATTTATATACAAATA  342

seq1  AACATATGTAAATTATTTGTGATCTGAGAGCTTATATTTATATTTTACCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATGTAAATTATTTGTGATCTGAGAGCTTATATTTATATTTTACCA  392

seq1  CAAACATTTCAACTACCATGAAATAACCATATGCGAGTCAGATGGCAAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATTTCAACTACCATGAAATAACCATATGCGAGTCAGATGGCAAAA  442

seq1  ATTAAAAGTAAATAAAATATTGTTAAACATAAAAAAACAGGCTGGAGAGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGTAAATAAAATATTGTTAAACATAAAAAAACAGGCTGGAGAGA  492

seq1  TGGCTCAGCGGTTAAGAGCATCTGACTGACTGCTCTTCCAAAGGTCCTGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGCGGTTAAGAGCATCTGACTGACTGCTCTTCCAAAGGTCCTGA  542

seq1  GTTCAATTCCCAGCAACCACATGGTGGCTCACAACCACCTTTAACAGGAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATTCCCAGCAACCACATGGTGGCTCACAACCACCTTTAACAGGAT  592

seq1  CCGATGCCCATTTCTGGTTTGTATGAAGACAGCTACAGTGTACTTGTCAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATGCCCATTTCTGGTTTGTATGAAGACAGCTACAGTGTACTTGTCAC  642

seq1  ATATATAAAATAAATAAATAAATACAATCTTCAAATAAAAATAAAAACAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAAAATAAATAAATAAATACAATCTTCAAATAAAAATAAAAACAA  692

seq1  AAACAGAGAACCACTGAGTTCAGTGATAAAATGTTAAAAAGAAAAGAAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGAACCACTGAGTTCAGTGATAAAATGTTAAAAAGAAAAGAAAA  742

seq1  AGAAAAAAAAACATAAAAAAACACATAGGCTATTATCAGAAATGTAAGGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAAACATAAAAAAACACATAGGCTATTATCAGAAATGTAAGGT  792

seq1  TGTATTTTTAAATGTTATTTCCAGTAGGAAGTAGTTGCTTCTACTAAGAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTTAAATGTTATTTCCAGTAGGAAGTAGTTGCTTCTACTAAGAT  842

seq1  AGCATATACAAATTGTAAGACATATATTTCTGTATTTATACCCAAGTAAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATACAAATTGTAAGACATATATTTCTGTATTTATACCCAAGTAAT  892

seq1  ACTGCATCTCTTGTCAAAGATTATAAAAGTTTTAATAGCACAATTCATAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATCTCTTGTCAAAGATTATAAAAGTTTTAATAGCACAATTCATAG  942

seq1  CAGCCCCAATCTAGGTATTGCTGAAGTCCCTACTTCCAGAATGAATGGAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCAATCTAGGTATTGCTGAAGTCCCTACTTCCAGAATGAATGGAT  992

seq1  AATGTACATTACCATTTCATAAAGAGATACTCCAAAGCAGTAATAGTGAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACATTACCATTTCATAAAGAGATACTCCAAAGCAGTAATAGTGAA  1042

seq1  GAAAGCTATGACTCCTTATATTTAACACAAAGGAACCAAATAAACTGCAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTATGACTCCTTATATTTAACACAAAGGAACCAAATAAACTGCAT  1092

seq1  TCTTTTGAGGTAGTTCAGCTGAAGGGTGCCATAGAATGCCATTATAGTCC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGAGGTAGTTCAGCTGAAGGGTGCCATAGAATGCCATTATAGTCC  1142

seq1  TGCTTCTTCTTTTTCTTTCTTGAATGTTTCTATTGATTCTTTAAGAATTC  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTTCTTTTTCTTTCTTGAATGTTTCTATTGATTCTTTAAGAATTC  1192


seq1: chr9_80398416_80399561
seq2: B6Ng01-229C04.g_64_1201

seq1  GAATTCTGTCTTTCCCTAGAGCTTAGTATTTGGTGAGTGATTTGAATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTTTCCCTAGAGCTTAGTATTTGGTGAGTGATTTGAATATT  50

seq1  GCAGGGCCTAGTCATGGGCCACACCCCTTAGAGTAGATGCATGTAGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCCTAGTCATGGGCCACACCCCTTAGAGTAGATGCATGTAGTAGA  100

seq1  GAATCATTTAAATGGGTTCTTACATTATTTAAATGACAAATGGGGTCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATTTAAATGGGTTCTTACATTATTTAAATGACAAATGGGGTCCCC  150

seq1  AATTTCTTGGGAAAGAGAGGCAAAGAAGATTGCTGCCCGGATATTTTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTGGGAAAGAGAGGCAAAGAAGATTGCTGCCCGGATATTTTCTA  200

seq1  AATCAAACTTAGTGTCAAATTATTATTATTTAGTATCACTGTGTAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAACTTAGTGTCAAATTATTATTATTTAGTATCACTGTGTAAAATA  250

seq1  AGACCAGTGTCTTCAGCAACAGAGGCTTATTTAATGATAGATTGACTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGTGTCTTCAGCAACAGAGGCTTATTTAATGATAGATTGACTGGT  300

seq1  TTGAATTCTAATCTGGACACTAGTATGCCAAGCTTGGCATGAAAGAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTCTAATCTGGACACTAGTATGCCAAGCTTGGCATGAAAGAGATG  350

seq1  TTACAGGCCTTCTGAAGGTTCCTTTGAAAAGCAAAGACTCAAGACTAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGCCTTCTGAAGGTTCCTTTGAAAAGCAAAGACTCAAGACTAGAA  400

seq1  TTCCTTCATTATCAGAGACTTTGGGGAAGCATAGTATATATTATAGATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCATTATCAGAGACTTTGGGGAAGCATAGTATATATTATAGATGA  450

seq1  GTTGAATTTCAAAGATAAAGGAAATGAAACAAATATCTGCATGTCTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATTTCAAAGATAAAGGAAATGAAACAAATATCTGCATGTCTCTTC  500

seq1  TATGTAAGGGAGTGCTGAGTCCAGCTGCTTCTAGAGTCCAGTGCACTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAGGGAGTGCTGAGTCCAGCTGCTTCTAGAGTCCAGTGCACTTAA  550

seq1  CACTACAGGTACTGACAGGACAAAATCAATCATGGAAGTTGCCGAATCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAGGTACTGACAGGACAAAATCAATCATGGAAGTTGCCGAATCTT  600

seq1  CCCACACCACTCTCAGAAAGTCAGCTACTATTCTTAGGATACCCTTGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACCACTCTCAGAAAGTCAGCTACTATTCTTAGGATACCCTTGGTG  650

seq1  AATATCTAGTCTGATACTCTCTGACCCATTCTAGAATGAAAAGAGGATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTAGTCTGATACTCTCTGACCCATTCTAGAATGAAAAGAGGATGC  700

seq1  TTGGAACAGACATTTTAATATAAGTTAACAAAATCCACATTGCCCACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACAGACATTTTAATATAAGTTAACAAAATCCACATTGCCCACAGA  750

seq1  ATAGCTCTGACCTTTCAAGCAACAAATATGAACCATCACGAAACCAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCTGACCTTTCAAGCAACAAATATGAACCATCACGAAACCAAATA  800

seq1  TGAGTGACCATCATCTCAGAAACACAGATTCAGTTTTACCCAAAGACCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGACCATCATCTCAGAAACACAGATTCAGTTTTACCCAAAGACCAT  850

seq1  GCACCCAATATGGTTATCAGTTCGGTTCTAATTAGACTTTTGATCACTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCAATATGGTTATCAGTTCGGTTCTAATTAGACTTTTGATCACTGT  900

seq1  AAAAAGCCAGCATCTTCAGCAGCAGAGGATTTCCAGGTGCTCCTCTGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCCAGCATCTTCAGCAGCAGAGGATTTCCAGGTGCTCCTCTGGAA  950

seq1  GGCAAGGACTCAGGATTGGAGAAGTTAGTTTTATAGTTACAGAAGAAAGA  1000
      ||||||||||||||||||||| |||||| |||||||||||||||||||||
seq2  GGCAAGGACTCAGGATTGGAG-AGTTAG-TTTATAGTTACAGAAGAAAGA  998

seq1  CATTCACAAATCAGATCCTTTCCAAATGCATCAGTGAGTCCACTGAGCAC  1050
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  CATTCACAAATCAGATCCTT--CAAATGCATCAGTGAGTCCACTGAGCAC  1046

seq1  GCAGGTTACAGGAAAGCAGGGGAACCTCAGATGGTAGCTGGCCGCGCCCT  1100
      ||| |||||||||||||| |||||||||||||| ||||| |||||||| |
seq2  GCA-GTTACAGGAAAGCA-GGGAACCTCAGATGTTAGCT-GCCGCGCCTT  1093

seq1  TAGACTGTTGGTTGGTGTCAATATGAGTTTTGGTTGTGTATTCCAA  1146
        |||||||||||||| ||||  ||||||||||| |||||||||||
seq2  AGGACTGTTGGTTGGT-TCAAATTGAGTTTTGGTGGTGTATTCCAA  1138


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