MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-229G22
Chromosome	9 (Build37)
Map Location	42,495,255 - 42,661,780
singlet/doublet	doublet
Overlap gene	Grik4
Upstream gene	6720432D03Rik, Sorl1, Sc5d, Tecta, Tbcel
Downstream gene	Arhgef12, LOC545339, Tmem136, Pou2f3, LOC628726, Oaf, D630033O11Rik, Trim29, LOC384931, Pvrl1, LOC100042548
Link	Open Mouse BAC browser

Click to get alignment info.

name	6720432D03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77740 MGI:1924990
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Sorl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20660 MGI:1202296
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sc5d (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235293 MGI:1353611
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tecta (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21683 MGI:109575
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tbcel (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:272589 MGI:1925543
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Grik4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110637 MGI:95817
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Arhgef12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69632 MGI:1916882
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC545339 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:545339
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 217 ESTs, 3 Proteins

name	Tmem136 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235300 MGI:2685030
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pou2f3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18988 MGI:102565
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC628726 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:628726
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins pseudo : _no_value

name	Oaf (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:102644 MGI:94852
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	D630033O11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235302 MGI:2685434
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Trim29 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72169 MGI:1919419
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC384931 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:384931
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	Pvrl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:58235 MGI:1926483
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042548 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042548
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 ESTs

name	6720432D03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259905 GeneID:77740 MGI:1924990
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 6720432D03 gene transcript_id : XM_001478273.1

name	Sorl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372316 GeneID:20660 MGI:1202296
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sortilin-related receptor, LDLR class A repeats-containing transcript_id : NM_011436.3

name	Sc5d (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27777692 GeneID:235293 MGI:1353611
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sterol-C5-desaturase (fungal ERG3, delta-5-desaturase) homolog (S. cerevisae) transcript_id : NM_172769.1

name	Tecta (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6678276 GeneID:21683 MGI:109575
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tectorin alpha transcript_id : NM_009347.1

name	Tbcel (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803037 GeneID:272589 MGI:1925543
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tubulin folding cofactor E-like transcript_id : NM_173038.2

name	Grik4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802216 GeneID:110637 MGI:95817
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glutamate receptor, ionotropic, kainate 4 transcript_id : NM_175481.3

name	Arhgef12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:145046272 GeneID:69632 MGI:1916882
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Rho guanine nucleotide exchange factor (GEF) 12 transcript_id : NM_027144.2

name	LOC545339 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94386061 GeneID:545339
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 216 ESTs, 3 Proteins product : similar to SP140 nuclear body protein family member, transcript variant 4 transcript_id : XM_901143.2

name	Tmem136 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802939 GeneID:235300 MGI:2685030
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 136 transcript_id : NM_001034863.2

name	Pou2f3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119226248 GeneID:18988 MGI:102565
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : POU domain, class 2, transcription factor 3 transcript_id : NM_011139.2

name	Oaf (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130610 GeneID:102644 MGI:94852
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : OAF homolog (Drosophila) transcript_id : NM_178644.3

name	D630033O11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259945 GeneID:235302 MGI:2685434
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : RIKEN cDNA D630033O11 gene transcript_id : XM_001479244.1

name	Trim29 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:29789214 GeneID:72169 MGI:1919419
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tripartite motif protein 29 transcript_id : NM_023655.1

name	Pvrl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254533 GeneID:58235 MGI:1926483
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : poliovirus receptor-related 1 transcript_id : NM_021424.2

name	LOC100042548 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259911 GeneID:100042548
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 ESTs product : similar to HVEC cell-cell adhesion molecule/herpesvirus receptor; HveC; PRR; PRR1; HigR; nectin-1 transcript_id : XM_001478419.1

name	6720432D03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149259906 GeneID:77740 MGI:1924990
definition	codon_start : 1 product : hypothetical protein LOC77740 protein_id : XP_001478323.1

name	Sorl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625645 GeneID:20660 MGI:1202296
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005319 - lipid transporter activity [Evidence IEA]; GO:0008565 - protein transporter activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0008203 - cholesterol metabolism [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0006897 - endocytosis [Evidence IEA]; GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA]; GO:0006869 - lipid transport [Evidence IEA]; GO:0008202 - steroid metabolism [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : sortilin-related receptor, LDLR class A repeats-containing protein_id : NP_035566.2

name	Sc5d (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27777693 CCDS:CCDS23086.1 GeneID:235293 MGI:1353611
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0008610 - lipid biosynthesis [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA]; GO:0006694 - steroid biosynthesis [Evidence IEA]; GO:0016126 - sterol biosynthesis [Evidence IEA] codon_start : 1 product : sterol-C5-desaturase (fungal ERG3, delta-5-desaturase) homolog protein_id : NP_766357.1

name	Tecta (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678277 CCDS:CCDS23087.1 GeneID:21683 MGI:109575
definition	GO_component : GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IDA] [Evidence TAS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005201 - extracellular matrix structural constituent [Evidence IDA] [Evidence TAS]; GO:0048503 - GPI anchor binding [Evidence IEA] GO_process : GO:0007605 - sensory perception of sound [Evidence TAS] codon_start : 1 exception : mismatches in translation function : major protein of the tectorial membrane of the inner ear note : [a]-tectorin product : tectorin alpha protein_id : NP_033373.1

name	Tbcel (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370562 CCDS:CCDS23088.1 GeneID:272589 MGI:1925543
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0005507 - copper ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : leucine rich repeat containing 35 protein_id : NP_766626.1

name	Grik4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30348983 CCDS:CCDS23089.1 GeneID:110637 MGI:95817
definition	GO_component : GO:0008328 - ionotropic glutamate receptor complex [Evidence IC]; GO:0045211 - postsynaptic membrane [Evidence IEA] GO_function : GO:0004970 - ionotropic glutamate receptor activity [Evidence TAS] GO_process : GO:0006811 - ion transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : glutamate receptor KA1 precursor protein_id : NP_780690.1

name	LOC545339 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:82929869 GeneID:545339
definition	codon_start : 1 product : similar to SP140 nuclear body protein family member isoform 4 protein_id : XP_906236.1

name	Arhgef12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:145046273 GeneID:69632 MGI:1916882
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005096 - GTPase activator activity [Evidence IEA]; GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0005089 - Rho guanyl-nucleotide exchange factor activity [Evidence IEA] GO_process : GO:0035023 - regulation of Rho protein signal transduction [Evidence IEA] codon_start : 1 note : leukemia-associated Rho guanine-nucleotide exchange factor product : Rho guanine nucleotide exchange factor 12 protein_id : NP_081420.2

name	Tmem136 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85702201 CCDS:CCDS23090.1 GeneID:235300 MGI:2685030
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] codon_start : 1 product : hypothetical protein LOC235300 protein_id : NP_001030035.1

name	Pou2f3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119226249 GeneID:18988 MGI:102565
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : POU domain, class 2, transcription factor 3 protein_id : NP_035269.2

name	Oaf (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30520003 CCDS:CCDS23091.1 GeneID:102644 MGI:94852
definition	codon_start : 1 product : out at first protein_id : NP_848759.1

name	D630033O11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149259946 GeneID:235302 MGI:2685434
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479294.1

name	Trim29 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29789215 GeneID:72169 MGI:1919419
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] codon_start : 1 product : tripartite motif protein 29 protein_id : NP_076144.1

name	Pvrl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254534 CCDS:CCDS23092.1 GeneID:58235 MGI:1926483
definition	GO_component : GO:0005913 - cell-cell adherens junction [Evidence IDA]; GO:0016021 - integral to membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence IDA]; GO:0004872 - receptor activity [Evidence IDA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0007157 - heterophilic cell adhesion [Evidence IDA]; GO:0007156 - homophilic cell adhesion [Evidence IDA] codon_start : 1 note : nectin-1 delta; nectin-1 alpha product : poliovirus receptor-related 1 protein_id : NP_067399.2

name	LOC100042548 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259912 GeneID:100042548
definition	codon_start : 1 product : similar to HVEC cell-cell adhesion molecule/herpesvirus receptor; HveC; PRR; PRR1; HigR; nectin-1 protein_id : XP_001478469.1

name	LOC628726 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:628726
definition	number : 1 pseudo : _no_value

name	LOC384931 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:384931
definition	number : 1 pseudo : _no_value

clone name	MSMg01-408J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-512B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-399P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-525H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-104O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-484C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-071G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-069M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-317M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-130G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-276F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-277E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-406F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377H11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276F05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-235P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-463I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-503G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-271J18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114I03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-085A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-216L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-271O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-216H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-047P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500O11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-302C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461K15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-125K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-215N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-479H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-475D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-103C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-163K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-519P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-411C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418P01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-478P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-543H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-210F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-401F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-492D05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-073J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059B11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-298A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-081F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-350M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474J17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264J12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-122G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026H18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-071M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169C02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-234K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178J02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168E02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220M18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-268D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-268A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042E02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297D02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273A03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-287D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199E02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030K13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094K20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007M01
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-229G22.b	B6Ng01-229G22.g
ACC	GA042583	GA042584
length	378	234
definition	B6Ng01-229G22.b	B6Ng01-229G22.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(42,495,255 - 42,495,632)	(42,661,547 - 42,661,780)
sequence	tcccatcttttaactcatgtgaacctcataacaaatacgcaagatttgca aagtagaacctagaactcccattttactgatgaataaactgaggtataga taggctgaatacctcagttggggaaaatggccatactccattccaagaca cagcatcttccttcattgcctccttcagcacaagaggataaggcagagcc aggtgactccttaggcaggaaagttgctgtgattcaaagctagcctgggc tacttacttagctctggaccagcctgtgctacaaagtgaatgcctatctc agtggtgaactactaaagacttgaagggaagggaaaagggaaaggagaag gaagttagagggggaggaggaaaggagg	cacatacttcagccgagggaaagggcatcactgtccatgtggttggctga tgttggtgagcttttgaagacacaatgctccacaaaggtgtggaagtcat taatctgtgtagggtggatgtacggctgtgatctgcaagccaagtagcac agagaaaattgactaggagtgtggagcagcatatatacagtgcgtgtgta gatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality values	Open. Hide. 28 28 56 26 14 56 56 62 62 56 51 51 44 59 62 44 39 62 62 62 62 46 56 59 59 49 49 30 31 28 28 35 35 35 51 59 59 62 56 62 59 59 59 59 59 62 62 62 62 59 56 62 62 59 59 56 62 62 62 62 56 59 43 54 59 62 62 62 62 54 59 62 62 62 59 59 59 62 62 59 62 62 59 56 59 59 59 59 59 62 62 59 59 62 56 59 62 62 59 59 62 54 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 62 62 62 62 49 62 62 62 62 62 59 62 62 54 42 54 62 62 62 54 54 62 59 62 62 62 59 62 62 62 59 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 59 62 59 59 59 59 59 54 54 59 59 62 59 62 59 62 59 62 59 62 62 59 62 62 62 62 59 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 56 56 50 56 56 62 62 49 62 54 62 62 62 62 62 62 62 62 47 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 58 58 58 58 44 58 58 58 54 58 54 58 54 58 58 58 58 58 58 58 58 58 54 58 58 58 52 47 37 52 20 11 6	Open. Hide. 43 30 62 59 62 45 51 45 34 15 26 28 51 51 59 62 54 54 62 59 62 62 62 62 59 62 59 59 62 59 62 62 62 62 62 49 59 62 62 62 62 62 59 62 62 59 49 62 62 59 59 62 62 59 56 54 59 59 62 59 62 62 54 59 62 59 62 62 56 59 62 62 62 62 62 62 62 62 62 49 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 59 59 62 62 62 59 62 62 62 62 62 59 59 59 62 62 62 62 62 62 62 62 62 59 62 62 59 59 62 51 62 59 62 62 44 35 59 62 62 62 62 62 62 62 62 62 62 62 59 62 49 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 54 62 62 62 62 62 62 62 62 62 62 62 62 37 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 38 14 10

Alignment Information

BAC End 1

BAC End 2

seq1: chr9_42495255_42495632
seq2: B6Ng01-229G22.b_48_425

seq1  TCCCATCTTTTAACTCATGTGAACCTCATAACAAATACGCAAGATTTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCTTTTAACTCATGTGAACCTCATAACAAATACGCAAGATTTGCA  50

seq1  AAGTAGAACCTAGAACTCCCATTTTACTGATGAATAAACTGAGGTATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAACCTAGAACTCCCATTTTACTGATGAATAAACTGAGGTATAGA  100

seq1  TAGGCTGAATACCTCAGTTGGGGAAAATGGCCATACTCCATTCCAAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGAATACCTCAGTTGGGGAAAATGGCCATACTCCATTCCAAGACA  150

seq1  CAGCATCTTCCTTCATTGCCTCCTTCAGCACAAGAGGATAAGGCAGAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCTTCCTTCATTGCCTCCTTCAGCACAAGAGGATAAGGCAGAGCC  200

seq1  AGGTGACTCCTTAGGCAGGAAAGTTGCTGTGATTCAAAGCTAGCCTGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACTCCTTAGGCAGGAAAGTTGCTGTGATTCAAAGCTAGCCTGGGC  250

seq1  TACTTACTTAGCTCTGGACCAGCCTGTGCTACAAAGTGAATGCCTATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACTTAGCTCTGGACCAGCCTGTGCTACAAAGTGAATGCCTATCTC  300

seq1  AGTGGTGAACTACTAAAGACTTGAAGGGAAGGGAAAAGGGAAAGGAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGAACTACTAAAGACTTGAAGGGAAGGGAAAAGGGAAAGGAGAAG  350

seq1  GAAGTTAGAGGGGGAGGAGGAAAGGAGG  378
      ||||||||||||||||||||||||||||
seq2  GAAGTTAGAGGGGGAGGAGGAAAGGAGG  378

seq1: chr9_42661547_42661780
seq2: B6Ng01-229G22.g_70_303 (reverse)

seq1  CACACACACACACACACACACACACACACACATCTACACACGCACTGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACATCTACACACGCACTGTAT  50

seq1  ATATGCTGCTCCACACTCCTAGTCAATTTTCTCTGTGCTACTTGGCTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTGCTCCACACTCCTAGTCAATTTTCTCTGTGCTACTTGGCTTGC  100

seq1  AGATCACAGCCGTACATCCACCCTACACAGATTAATGACTTCCACACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACAGCCGTACATCCACCCTACACAGATTAATGACTTCCACACCTT  150

seq1  TGTGGAGCATTGTGTCTTCAAAAGCTCACCAACATCAGCCAACCACATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGCATTGTGTCTTCAAAAGCTCACCAACATCAGCCAACCACATGG  200

seq1  ACAGTGATGCCCTTTCCCTCGGCTGAAGTATGTG  234
      ||||||||||||||||||||||||||||||||||
seq2  ACAGTGATGCCCTTTCCCTCGGCTGAAGTATGTG  234

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information