BAC Information

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BAC

Clone NameB6Ng01-229N15
Chromosome9 (Build37)
Map Location 107,752,215 - 107,866,124
singlet/doubletdoublet
Overlap geneRbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip
Upstream geneVprbp, Armet, Dock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5
Downstream geneUbe1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229N15.bB6Ng01-229N15.g
ACCGA042871GA042872
length3791,082
definitionB6Ng01-229N15.b B6Ng01-229N15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,752,215 - 107,752,593)(107,865,043 - 107,866,124)
sequence
agagatcctcctggctctgcttcctgtgtgctgggattaaagacatatgc
caccatacttggcttagctcccagtctttactactgtaagtcgactgcat
ctttgtgcatgtactcctgatataatatggtctcaaggatattatcaagt
ctcaagatagcagtcatgagtcatttttcaaactttcaggtcagtgacat
caaataagctctacaggttattccaaaattacttcctggcctaattagac
atcatactacagttactacagatgttaacactgaggaatataggtcaaag
aatgtatgtcatccctggttatttatttatcaaaataaaatggctgagca
gctggccttattttgggggtgggggaaga
gaattcatagatacatctgtctgcctctgcctcccgaatgctaggattaa
agacgtgcaccaacaccaccaggctgagggggcttattttagagtgagca
ctctcaagtatgtttcagagatggggcagacagacgcatgtggtgagaaa
ctccaggatactccaagacaaccactgcccctgccctgtcctcaggctac
tcaaaggctttctctgcctttcctggtcagaccccaaattctctcaaagc
cgcttttcagttagagcctggctggctctctggtcagaaggtccataaac
acatctatcccaccaaagccaggagcgcaggctctcttagcttgtgatcc
agaatcaccccagaagggtaacaaacctctcaaaaaccaggcggctgacc
gtctcattggtcgccggaggcaggctcaaggttccctggaggatcatcag
cttctttcttaggctctggagaaaggagagcgagaacctgagagaaaggt
tgtggcactaaggagaaacgcctgtgtaaagggcacagggaacagagtga
gggctgaccaccaacaccagccaggcctgagaactccgcttggtggcata
ctcgctctggagattagggaccgccttggaggtaagaactgagcagacga
cagaggaagattcacggtgcccttagccctctgctgaggagggacaggct
caaggccagactagggtgcatatgctgacccacctccaacccaggaggat
acagagggcccggaaacaccaatgactgtaacacaggtttccaggcagaa
acagtccagccctacccttagaggcacataacccctcaggtcccctcact
tcccacaggccagggtgtctcaccgtgatctcctggtcagcactttgtaa
gtccttctgggctgacctcagttctaccttggcctgatccagctcagtgt
tgagagtctcactgtaagaaggagagccagtgtgccacatgacctgcccc
ctacctgctgctatccagtgtattgtttggtagtctaaaaaaaaaaaaaa
aaaaaccggaggttacatggggagaacccaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_107752215_107752593
seq2: B6Ng01-229N15.b_50_428

seq1  AGAGATCCTCCTGGCTCTGCTTCCTGTGTGCTGGGATTAAAGACATATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCCTCCTGGCTCTGCTTCCTGTGTGCTGGGATTAAAGACATATGC  50

seq1  CACCATACTTGGCTTAGCTCCCAGTCTTTACTACTGTAAGTCGACTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATACTTGGCTTAGCTCCCAGTCTTTACTACTGTAAGTCGACTGCAT  100

seq1  CTTTGTGCATGTACTCCTGATATAATATGGTCTCAAGGATATTATCAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGCATGTACTCCTGATATAATATGGTCTCAAGGATATTATCAAGT  150

seq1  CTCAAGATAGCAGTCATGAGTCATTTTTCAAACTTTCAGGTCAGTGACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGATAGCAGTCATGAGTCATTTTTCAAACTTTCAGGTCAGTGACAT  200

seq1  CAAATAAGCTCTACAGGTTATTCCAAAATTACTTCCTGGCCTAATTAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAGCTCTACAGGTTATTCCAAAATTACTTCCTGGCCTAATTAGAC  250

seq1  ATCATACTACAGTTACTACAGATGTTAACACTGAGGAATATAGGTCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACTACAGTTACTACAGATGTTAACACTGAGGAATATAGGTCAAAG  300

seq1  AATGTATGTCATCCCTGGTTATTTATTTATCAAAATAAAATGGCTGAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATGTCATCCCTGGTTATTTATTTATCAAAATAAAATGGCTGAGCA  350

seq1  GCTGGCCTTATTTTGGGGGTGGGGGAAGA  379
      |||||||||||||||||||||||||||||
seq2  GCTGGCCTTATTTTGGGGGTGGGGGAAGA  379

seq1: chr9_107865043_107866124
seq2: B6Ng01-229N15.g_68_1149 (reverse)

seq1  TCTGGGGTCTCCCC-TGT-ACCTCCGG--TTTTTTTTTTTTTTTTTAGAC  46
      |||||| ||||||| ||| ||||||||  |||||||||||||||||||||
seq2  TCTGGGTTCTCCCCATGTAACCTCCGGTTTTTTTTTTTTTTTTTTTAGAC  50

seq1  TACCCAAACATACACTGGATAGCAGCAGGTA-GGGGCAGGTCATGTGGCA  95
      |||| ||  |||||||||||||||||||||| ||||||||||||||||||
seq2  TACCAAACAATACACTGGATAGCAGCAGGTAGGGGGCAGGTCATGTGGCA  100

seq1  CCACTGGCTTCTCCTTTCTTACAGTTGAAGACTCTCAACACTGAGCTGGA  145
       ||||||| ||||| ||||||||||   ||||||||||||||||||||||
seq2  -CACTGGC-TCTCC-TTCTTACAGT--GAGACTCTCAACACTGAGCTGGA  145

seq1  TCAGGCCAAGTTAGAACTGAGGTCAGCCCAGAAGGACTTACAAAGTGCTG  195
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCAAGGTAGAACTGAGGTCAGCCCAGAAGGACTTACAAAGTGCTG  195

seq1  ACCAGGAGATCACGGTGAGACACCCTGGCCTGTGGGAAGTGAGGGGACCT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAGATCACGGTGAGACACCCTGGCCTGTGGGAAGTGAGGGGACCT  245

seq1  GAGGGGTTATGTGCCTCTAAGGGTAGGGCTGGACTGTTTCTGCCTGGAAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTTATGTGCCTCTAAGGGTAGGGCTGGACTGTTTCTGCCTGGAAA  295

seq1  CCTGTGTTACAGTCATTGGTGTTTCCGGGCCCTCTGTATCCTCCTGGGTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTTACAGTCATTGGTGTTTCCGGGCCCTCTGTATCCTCCTGGGTT  345

seq1  GGAGGTGGGTCAGCATATGCACCCTAGTCTGGCCTTGAGCCTGTCCCTCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGGGTCAGCATATGCACCCTAGTCTGGCCTTGAGCCTGTCCCTCC  395

seq1  TCAGCAGAGGGCTAAGGGCACCGTGAATCTTCCTCTGTCGTCTGCTCAGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGAGGGCTAAGGGCACCGTGAATCTTCCTCTGTCGTCTGCTCAGT  445

seq1  TCTTACCTCCAAGGCGGTCCCTAATCTCCAGAGCGAGTATGCCACCAAGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCTCCAAGGCGGTCCCTAATCTCCAGAGCGAGTATGCCACCAAGC  495

seq1  GGAGTTCTCAGGCCTGGCTGGTGTTGGTGGTCAGCCCTCACTCTGTTCCC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCTCAGGCCTGGCTGGTGTTGGTGGTCAGCCCTCACTCTGTTCCC  545

seq1  TGTGCCCTTTACACAGGCGTTTCTCCTTAGTGCCACAACCTTTCTCTCAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCTTTACACAGGCGTTTCTCCTTAGTGCCACAACCTTTCTCTCAG  595

seq1  GTTCTCGCTCTCCTTTCTCCAGAGCCTAAGAAAGAAGCTGATGATCCTCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCGCTCTCCTTTCTCCAGAGCCTAAGAAAGAAGCTGATGATCCTCC  645

seq1  AGGGAACCTTGAGCCTGCCTCCGGCGACCAATGAGACGGTCAGCCGCCTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACCTTGAGCCTGCCTCCGGCGACCAATGAGACGGTCAGCCGCCTG  695

seq1  GTTTTTGAGAGGTTTGTTACCCTTCTGGGGTGATTCTGGATCACAAGCTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGAGAGGTTTGTTACCCTTCTGGGGTGATTCTGGATCACAAGCTA  745

seq1  AGAGAGCCTGCGCTCCTGGCTTTGGTGGGATAGATGTGTTTATGGACCTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCCTGCGCTCCTGGCTTTGGTGGGATAGATGTGTTTATGGACCTT  795

seq1  CTGACCAGAGAGCCAGCCAGGCTCTAACTGAAAAGCGGCTTTGAGAGAAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCAGAGAGCCAGCCAGGCTCTAACTGAAAAGCGGCTTTGAGAGAAT  845

seq1  TTGGGGTCTGACCAGGAAAGGCAGAGAAAGCCTTTGAGTAGCCTGAGGAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTCTGACCAGGAAAGGCAGAGAAAGCCTTTGAGTAGCCTGAGGAC  895

seq1  AGGGCAGGGGCAGTGGTTGTCTTGGAGTATCCTGGAGTTTCTCACCACAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGGGGCAGTGGTTGTCTTGGAGTATCCTGGAGTTTCTCACCACAT  945

seq1  GCGTCTGTCTGCCCCATCTCTGAAACATACTTGAGAGTGCTCACTCTAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCTGTCTGCCCCATCTCTGAAACATACTTGAGAGTGCTCACTCTAAA  995

seq1  ATAAGCCCCCTCAGCCTGGTGGTGTTGGTGCACGTCTTTAATCCTAGCAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCCCCCTCAGCCTGGTGGTGTTGGTGCACGTCTTTAATCCTAGCAT  1045

seq1  TCGGGAGGCAGAGGCAGACAGATGTATCTATGAATTC  1082
      |||||||||||||||||||||||||||||||||||||
seq2  TCGGGAGGCAGAGGCAGACAGATGTATCTATGAATTC  1082