BAC Information

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BAC

Clone NameB6Ng01-230G13
Chromosome9 (Build37)
Map Location 29,255,701 - 29,482,550
singlet/doubletdoublet
Overlap geneHnt
Upstream geneOpcml, LOC625222
Downstream geneSnx19, LOC666478
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230G13.bB6Ng01-230G13.g
ACCGA043280GA043281
length1,1191,064
definitionB6Ng01-230G13.b B6Ng01-230G13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,255,701 - 29,256,817)(29,481,485 - 29,482,550)
sequence
gaattcatttaatcacacaaaggagagggagagaaacataaaagatcaga
gccttaaaacaccaggttatcagctggcctgtaaatacagaaaaatgaac
aaacctcaaatcctaccatcaaaaaccatatgcactattatcggaagtga
ttttaatcctttcaaaaactttcaagttaaggaaactttccttgcatgaa
acattgcactaaactcaatatataaataagggtggttgaaggcatatagg
tgaatgtaggcagagcaggaacacacgatgcagtacagaatctatttttt
tgattttttgccatttgccccgatgttgctataaagggtccaggaagaaa
gccatcaccttggtgagttcactctttgcatagctatgcaagattatctg
taaccaaatctctagcctcaattctgaaagccccaactggattgatactt
ttcctaggccaatcttctttcaataattagtaatagtaataataacaata
ataaattatttggtcatttgaagtagccaaccattagtcaaggacctaat
ctcaacctatcatcccttgagtttagatgaaccattatagagtacagtgc
agaatctctcaggagcaaaagagaaaggtttcatcatggtatatgtttgt
cattcaattatttgttaggtcttggctgagaacatataagaaataaagta
ccaaaaaatttaactacaactgattcaaccaaaagatgaacccattcatt
cagtcaacccccgcccaccccaaatcagagcctaagatattatccactaa
aatgtatagaattccaggtttataatctgtttggtatcatgcatattgat
aaccatctaatggcaagtgacttactgttttcctgctgatgttattttta
aaaattggaaaacataacacaatgggaaaattcatgttgaaggaagacac
tttaaaattagagtagaagcatgaccataggtaacacggcctcttgccaa
tactttgccgggctgcaatcaagaagattgatgcctccttaatccagcac
ctcggaggcagagcaggtggatttctgagtcgaggccaggcttagctggg
tcctacgagtgagttccag

gaattcattcaacgatgaaccattcagagtgaaatagagagagagaaaga
cagaaattgtgcctagagccaaagctatttgaaaaaaatcccaaagccac
tggatggaaggtcaccttgcctgtggggagttgaactctcctgtcccaag
cagctaggctggccctgatccttggtccccaccacttccatcacctgtga
caaaaaaaataaaaaaatactcatggcatttggtgacctccgtggcatct
gtgtctcagggcctctgtggtctgtgcctctcacccctattccctccatg
cagagaaggccaggcaggttgagggaagagtgaggaagagggcatcaagc
agggccaaaacaaaagaaaaatgtcgaagggggggcaaggcccccgggac
gggcttcctgcgagatcccgagtttcattaaatatagaaaggtggaatga
aaaaataatattccctcattgttagagtttcaaagtcagaagccagcctt
gatttcaaagaactcgtgtgtaatgcgatgcgtgacttttctcccgtctc
tctttttataggtaagtgacatttcattctgctcatccccaaggcaaagc
tggatgttttaaaagtggaaaaaaaaagtgtgtgtcaaaagaaacgggga
atgtgggaagaggtggaagtcgagggtcatcccaggtaggtgcctgcttc
attcttcattttccacgcagacgtcaaggccgtttccccaggacgtcatg
gagaggtcattctccaggacagaaggtctgggttgtggctttgagatggc
cctgagtttgctctttgaaatgggtgagatctgtacgtgctggctgcact
tgccaacaggggacgcattcctggagaggttccaagtgggaagtggctta
gggctgtgtgctctgaggctgggcaccagctgctctaggtggacaaggcg
tttgaaggattgcaggggttgctgttgcttctggaaagagatttatgtat
tcccaaggaagaaaacttaggactggagacctcctgtcccaagagggttg
taattgggctagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_29255701_29256817
seq2: B6Ng01-230G13.b_32_1150

seq1  GAATTCATTTAATCACACAAAGGAGAGGGAGAGAAACATAAAAGATCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTAATCACACAAAGGAGAGGGAGAGAAACATAAAAGATCAGA  50

seq1  GCCTTAAAACACCAGGTTATCAGCTGGCCTGTAAATACAGAAAAATGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAAAACACCAGGTTATCAGCTGGCCTGTAAATACAGAAAAATGAAC  100

seq1  AAACCTCAAATCCTACCATCAAAAACCATATGCACTATTATCGGAAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCAAATCCTACCATCAAAAACCATATGCACTATTATCGGAAGTGA  150

seq1  TTTTAATCCTTTCAAAAACTTTCAAGTTAAGGAAACTTTCCTTGCATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCCTTTCAAAAACTTTCAAGTTAAGGAAACTTTCCTTGCATGAA  200

seq1  ACATTGCACTAAACTCAATATATAAATAAGGGTGGTTGAAGGCATATAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCACTAAACTCAATATATAAATAAGGGTGGTTGAAGGCATATAGG  250

seq1  TGAATGTAGGCAGAGCAGGAACACACGATGCAGTACAGAATCTATTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTAGGCAGAGCAGGAACACACGATGCAGTACAGAATCTATTTTTT  300

seq1  TGATTTTTTGCCATTTGCCCCGATGTTGCTATAAAGGGTCCAGGAAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTTGCCATTTGCCCCGATGTTGCTATAAAGGGTCCAGGAAGAAA  350

seq1  GCCATCACCTTGGTGAGTTCACTCTTTGCATAGCTATGCAAGATTATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCACCTTGGTGAGTTCACTCTTTGCATAGCTATGCAAGATTATCTG  400

seq1  TAACCAAATCTCTAGCCTCAATTCTGAAAGCCCCAACTGGATTGATACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAAATCTCTAGCCTCAATTCTGAAAGCCCCAACTGGATTGATACTT  450

seq1  TTCCTAGGCCAATCTTCTTTCAATAATTAGTAATAGTAATAATAACAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGGCCAATCTTCTTTCAATAATTAGTAATAGTAATAATAACAATA  500

seq1  ATAAATTATTTGGTCATTTGAAGTAGCCAACCATTAGTCAAGGACCTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTATTTGGTCATTTGAAGTAGCCAACCATTAGTCAAGGACCTAAT  550

seq1  CTCAACCTATCATCCCTTGAGTTTAGATGAACCATTATAGAGTACAGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACCTATCATCCCTTGAGTTTAGATGAACCATTATAGAGTACAGTGC  600

seq1  AGAATCTCTCAGGAGCAAAAGAGAAAGGTTTCATCATGGTATATGTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTCTCAGGAGCAAAAGAGAAAGGTTTCATCATGGTATATGTTTGT  650

seq1  CATTCAATTATTTGTTAGGTCTTGGCTGAGAACATATAAGAAATAAAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAATTATTTGTTAGGTCTTGGCTGAGAACATATAAGAAATAAAGTA  700

seq1  CC-AAAAATTTAACTACAACTGATTCAACCAAAAGATGAACCCATTCATT  749
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAATTTAACTACAACTGATTCAACCAAAAGATGAACCCATTCATT  750

seq1  CAGTCAACCCCCGCCCACCCCAAATCAGAGCCTAAGATATTATCCACTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAACCCCCGCCCACCCCAAATCAGAGCCTAAGATATTATCCACTAA  800

seq1  AATGTATAGAATTCCAGGTTTATAATCTGTTTGGTATCATGCATATTGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATAGAATTCCAGGTTTATAATCTGTTTGGTATCATGCATATTGAT  850

seq1  AACCATCTAATGGCAAGTGACTTACTGTTTTCCTGCTGATGTTATTTTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCTAATGGCAAGTGACTTACTGTTTTCCTGCTGATGTTATTTTTA  900

seq1  AAAATTGG-AAACATAACACAATGGGAAAATTCATGTTGAAGGAAGACAC  948
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGGAAAACATAACACAATGGGAAAATTCATGTTGAAGGAAGACAC  950

seq1  -TTAAAATTAGAGTAGAAGCATGACCATAGGTAACACGGCCTC-TGCC-A  995
       |||||||||||||||||||||||||||||||||||||||||| |||| |
seq2  TTTAAAATTAGAGTAGAAGCATGACCATAGGTAACACGGCCTCTTGCCAA  1000

seq1  TACCTTGCCGGGCTGCCAATCAAGAAGATTGATGCTCCTTTAATCCCAGC  1045
      ||| ||||||||||| |||||||||||||||||||  | ||||| |||||
seq2  TACTTTGCCGGGCTG-CAATCAAGAAGATTGATGCCTCCTTAAT-CCAGC  1048

seq1  ACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGGC-TAGC  1094
      ||   ||||||||| ||||||||||||||||| |||||||||||| ||||
seq2  ACCTCGGAGGCAGA-GCAGGTGGATTTCTGAG-TCGAGGCCAGGCTTAGC  1096

seq1  CTGGT-CTACAGAGTGAGTTCCAG  1117
        ||| |||| |||||||||||||
seq2  TGGGTCCTAC-GAGTGAGTTCCAG  1119


seq1: chr9_29481485_29482550
seq2: B6Ng01-230G13.g_63_1126 (reverse)

seq1  TTCTAGCCCATTTACAACCCTCTTGGGACAGGAGTTCTCCAGTCCCTAAG  50
      |||||||||| ||||||||||||||||||||||| |||||||| ||||||
seq2  TTCTAGCCCAATTACAACCCTCTTGGGACAGGAGGTCTCCAGT-CCTAAG  49

seq1  TTTTCTTCCTTGGGAATACCTTAATCCTCTTTCCAGAAGCAAACAGCAAA  100
      ||||||||||||||||||| | ||| |||||||||||||| |||||| ||
seq2  TTTTCTTCCTTGGGAATACATAAAT-CTCTTTCCAGAAGC-AACAGC-AA  96

seq1  CCCCTGCAATCC-TCAAACGCC-TGTCCACCTAGAGCAGCTGGTGCCCAG  148
      |||||||||||| ||||||||| |||||||||||||||||||||||||||
seq2  CCCCTGCAATCCTTCAAACGCCTTGTCCACCTAGAGCAGCTGGTGCCCAG  146

seq1  CCTCAGAGCACACAGCCCTAAGCCACTTCCCACTTGGAACCTCTCCAGGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAGCACACAGCCCTAAGCCACTTCCCACTTGGAACCTCTCCAGGA  196

seq1  ATGCGTCCCCTGTTGGC-AGTGCAGCCAGCACGGTACAGATCTCACCCAT  247
      ||||||||||||||||| |||||||||||||| |||||||||||||||||
seq2  ATGCGTCCCCTGTTGGCAAGTGCAGCCAGCAC-GTACAGATCTCACCCAT  245

seq1  TTCAAAGAGCAAACTCAGGGCCATCTCAAAGCCACAACCCAGACCTTCTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGAGCAAACTCAGGGCCATCTCAAAGCCACAACCCAGACCTTCTG  295

seq1  TCCTGGAGAATGACCTCTCCATGACGTCCTGGGGAAACGGCCTTGACGTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAGAATGACCTCTCCATGACGTCCTGGGGAAACGGCCTTGACGTC  345

seq1  TGCGTGGAAAATGAAGAATGAAGCAGGCACCTACCTGGGATGACCCTCGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGGAAAATGAAGAATGAAGCAGGCACCTACCTGGGATGACCCTCGA  395

seq1  CTTCCACCTCTTCCCACATTCCCCGTTTCTTTTGACACACACTTTTTTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACCTCTTCCCACATTCCCCGTTTCTTTTGACACACACTTTTTTTT  445

seq1  TCCACTTTTAAAACATCCAGCTTTGCCTTGGGGATGAGCAGAATGAAATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTTTAAAACATCCAGCTTTGCCTTGGGGATGAGCAGAATGAAATG  495

seq1  TCACTTACCTATAAAAAGAGAGACGGGAGAAAAGTCACGCATCGCATTAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTACCTATAAAAAGAGAGACGGGAGAAAAGTCACGCATCGCATTAC  545

seq1  ACACGAGTTCTTTGAAATCAAGGCTGGCTTCTGACTTTGAAACTCTAACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGAGTTCTTTGAAATCAAGGCTGGCTTCTGACTTTGAAACTCTAACA  595

seq1  ATGAGGGAATATTATTTTTTCATTCCACCTTTCTATATTTAATGAAACTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGAATATTATTTTTTCATTCCACCTTTCTATATTTAATGAAACTC  645

seq1  GGGATCTCGCAGGAAGCCCGTCCCGGGGGCCTTGCCCCCCCTTCGACATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTCGCAGGAAGCCCGTCCCGGGGGCCTTGCCCCCCCTTCGACATT  695

seq1  TTTCTTTTGTTTTGGCCCTGCTTGATGCCCTCTTCCTCACTCTTCCCTCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTGTTTTGGCCCTGCTTGATGCCCTCTTCCTCACTCTTCCCTCA  745

seq1  ACCTGCCTGGCCTTCTCTGCATGGAGGGAATAGGGGTGAGAGGCACAGAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCTGGCCTTCTCTGCATGGAGGGAATAGGGGTGAGAGGCACAGAC  795

seq1  CACAGAGGCCCTGAGACACAGATGCCACGGAGGTCACCAAATGCCATGAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGCCCTGAGACACAGATGCCACGGAGGTCACCAAATGCCATGAG  845

seq1  TATTTTTTTATTTTTTTTGTCACAGGTGATGGAAGTGGTGGGGACCAAGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTATTTTTTTTGTCACAGGTGATGGAAGTGGTGGGGACCAAGG  895

seq1  ATCAGGGCCAGCCTAGCTGCTTGGGACAGGAGAGTTCAACTCCCCACAGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGCCAGCCTAGCTGCTTGGGACAGGAGAGTTCAACTCCCCACAGG  945

seq1  CAAGGTGACCTTCCATCCAGTGGCTTTGGGATTTTTTTCAAATAGCTTTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGACCTTCCATCCAGTGGCTTTGGGATTTTTTTCAAATAGCTTTG  995

seq1  GCTCTAGGCACAATTTCTGTCTTTCTCTCTCTCTATTTCACTCTGAATGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGGCACAATTTCTGTCTTTCTCTCTCTCTATTTCACTCTGAATGG  1045

seq1  TTCATCGTTGAATGAATTC  1066
      |||||||||||||||||||
seq2  TTCATCGTTGAATGAATTC  1064


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