BAC Information

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BAC

Clone NameB6Ng01-232J22
Chromosome9 (Build37)
Map Location 64,249,208 - 64,250,310
singlet/doubletsinglet
Overlap geneMegf11
Upstream geneIqch, LOC621763, 2310007F21Rik, Smad3, LOC100040009, Smad6, 2600006L11Rik, Lctl, Zwilch, Rpl4, Snapc5, Map2k1, Uchl4, Tipin, Dis3l
Downstream geneRab11a, AI115600, F730015K02Rik, Slc24a1, 2010321M09Rik, Ptplad1, Dpp8, Nope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232J22.bB6Ng01-232J22.g
ACCGA044910GA044911
length1,1361,164
definitionB6Ng01-232J22.b B6Ng01-232J22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaaatcatgcgcaggttaggtaccgaaaccatgccttcttcttt
ggcagtgaatggggagcgagcagtggctcagttggtagagggagtgctgc
tggcccagcaggcacacagccataggttccaccccagcactgaataaatg
tcatgatgacccaagcctaagcactggggaggtagaagcaggatgagtag
aagttcaaggctacccttagttatttatggagttagacaccagcttgggc
catactgagactgtctcaagagaaagggaaagagaaaggaagacagagga
acttaggagattcctttggagaaagtgatttggaaggagtcaaggaattg
gatgccatgtgtcgggggactggcctgctctggaaagggcgggttccatg
agaagcccaacctctaagtcaatcttggggttctctgtagcttctgtgtc
aggaatggaggcaaggcccatcctagagggactgtgactgtctagtgtga
cagcccaggagggcagtatacaacgccccggagaaggggatcagtcatgc
gaggtatgaggggggacctgagaatgggtgacaaaggcaaccattgtggc
aggtgtgcacacgctcacagcgagctttcttgagttagaggatttggggt
ccagccacctctcttctgtacagcctgcccaactcatccaagatctgctc
tgtcttgttattcaggcctccactgaggccttggtgggcgacaggcagcc
ttgctcctggcccaggaactttcacagggcgcacccctcccccagtccat
ctcaatttcatactctcggaggcaggacgaaaggatctttttgagtgcaa
agtggaccaggcttcctgcactgtcggaaaccccttttaatgcttctccc
atttgcccctcaagattaagtcaaaactcattaagcgtggcaggtcaagg
gcccagtttagcttgccttctctccatattccccctcccttccttcaagt
ttgcatgggtcctcaaggcttccggaggtgcttccaagcaccaactgggc
ccaccttcctctgtccagttccctttggtctggctgacccctttcttctt
tttccacaggttagacagaacacgtgcttcctccgg
gaattcaatttcacaggaaaaccggctgaacactaactcacacatccctc
ggggtcagtctcctttgtctagcctttcttctctgccacagcatctctgt
aaggcacaggtgtgggtggaaaggagactgtgcagccatttggggtccca
cacacattacagagggtttcttggaagctccaaatagatagaccccctac
ccctgatccaggagagccactgagtaagactttagacaaagccacatccc
atgccttcctttggcataggtaccttgtgtcaaatctgcatatcaaaaga
ccacaactagatttgcctggctcagcagagagcaggcaagagcacacgca
ctgtatcaggccaatgtgtgtgaacccgtcattcccctctctaagggctt
tttgtttttgtttgttttgttttacaggttttaaaattgttcttcccctt
attcactttatatcccactctctgcctgcgtcccaggcccccccttcctc
aatccttcccccacacctcctccccttctcctccaagcaagtggggacac
ccccagagtatatccccaccctggtacatcaagtctctgtgagactaggc
acatcctctcctgctgaggccagacaaggcacccagctagtagaatatat
cccatggacaggcaatagcttatgggatcgtgcccagtccagttgttggg
gacccacatgaaaaccaagctgcgcctctgctacatatgtgtggggaggc
ctagtccagcctgtgtatgctctttgatcagtggtcaagtctctgagcgc
tccaagagtccaggttagttgactctgttggtcttcctgtggagttttta
atctccctccagggcccacaatctacactattggcatatttattcagcta
tcaaaaacaaagacaccaatgaatttttgatggcaaatagatggaacctt
gagaatatccatcctggagtggagttacgtagatccaaaaggacatgcta
ctggttatgtacttcatttataagtggacattggcccataaaaataccag
caatacgtactgcccatattccatagacctaaagtagctatccaggagat
ggccaagccggatgcttggaatctcttaaggttttaactttacctctctc
taagtgctaagccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_64249208_64250310
seq2: B6Ng01-232J22.b_47_1182

seq1  GAATTCAAAATCATGCGCAGGTTAGGTACCGAAACCATGCCTTCTTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATCATGCGCAGGTTAGGTACCGAAACCATGCCTTCTTCTTT  50

seq1  GGCAGTGAATGGGGAGCGAGCAGTGGCTCAGTTGGTAGAGGGAGTGCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGAATGGGGAGCGAGCAGTGGCTCAGTTGGTAGAGGGAGTGCTGC  100

seq1  TGGCCCAGCAGGCACACAGCCATAGGTTCCACCCCAGCACTGAATAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCAGCAGGCACACAGCCATAGGTTCCACCCCAGCACTGAATAAATG  150

seq1  TCATGATGACCCAAGCCTAAGCACTGGGGAGGTAGAAGCAGGATGAGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATGACCCAAGCCTAAGCACTGGGGAGGTAGAAGCAGGATGAGTAG  200

seq1  AAGTTCAAGGCTACCCTTAGTTATTTATGGAGTTAGACACCAGCTTGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAAGGCTACCCTTAGTTATTTATGGAGTTAGACACCAGCTTGGGC  250

seq1  CATACTGAGACTGTCTCAAGAGAAAGGGAAAGAGAAAGGAAGACAGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGAGACTGTCTCAAGAGAAAGGGAAAGAGAAAGGAAGACAGAGGA  300

seq1  ACTTAGGAGATTCCTTTGGAGAAAGTGATTTGGAAGGAGTCAAGGAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGAGATTCCTTTGGAGAAAGTGATTTGGAAGGAGTCAAGGAATTG  350

seq1  GATGCCATGTGTCGGGGGACTGGCCTGCTCTGGAAAGGGCGGGTTCCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCATGTGTCGGGGGACTGGCCTGCTCTGGAAAGGGCGGGTTCCATG  400

seq1  AGAAGCCCAACCTCTAAGTCAATCTTGGGGTTCTCTGTAGCTTCTGTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCCAACCTCTAAGTCAATCTTGGGGTTCTCTGTAGCTTCTGTGTC  450

seq1  AGGAATGGAGGCAAGGCCCATCCTAGAGGGACTGTGACTGTCTAGTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGGAGGCAAGGCCCATCCTAGAGGGACTGTGACTGTCTAGTGTGA  500

seq1  CAGCCCAGGAGGGCAGTATACAACGCCCCGGAGAAGGGGATCAGTCATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAGGAGGGCAGTATACAACGCCCCGGAGAAGGGGATCAGTCATGC  550

seq1  GAGGTATGAGGGGGGACCTGAGAATGGGTGACAAAGGCAACCATTGTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATGAGGGGGGACCTGAGAATGGGTGACAAAGGCAACCATTGTGGC  600

seq1  AGGTGTGCACACGCTCACAGCGAGCTTTCTTGAGTTAGAGGATTTGGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGCACACGCTCACAGCGAGCTTTCTTGAGTTAGAGGATTTGGGGT  650

seq1  CCAGCCACCTCTCTTCTGTACAGCCTGCCCAACTCATCCAAGATCTGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCACCTCTCTTCTGTACAGCCTGCCCAACTCATCCAAGATCTGCTC  700

seq1  TGTCTTGTTATTCAGGCCTCCACTGAGGCCTTGGTGGGCGACAGGCAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGTTATTCAGGCCTCCACTGAGGCCTTGGTGGGCGACAGGCAGCC  750

seq1  TTGCTCCTGGCCCAGGAACTTTCACAGGGCGCACCCCTCCCCCAGTCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCTGGCCCAGGAACTTTCACAGGGCGCACCCCTCCCCCAGTCCAT  800

seq1  CTCAA-TTCATACTCTCGGAGGCAGGACG-AAGGATCTTTTTGAGTGCAA  848
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTCAATTTCATACTCTCGGAGGCAGGACGAAAGGATCTTTTTGAGTGCAA  850

seq1  AGTGGACCAGGCTT-CTGCACTGTCGGAAACCC--TTTAATGCTTC-CCC  894
      |||||||||||||| ||||||||||||||||||  ||||||||||| |||
seq2  AGTGGACCAGGCTTCCTGCACTGTCGGAAACCCCTTTTAATGCTTCTCCC  900

seq1  ATT--GCCCTCAGGATAAAGTCAAAACTCATT-AGCGTGGCA-GTCAA-G  939
      |||   |||||| ||| ||||||||||||||| ||||||||| ||||| |
seq2  ATTTGCCCCTCAAGATTAAGTCAAAACTCATTAAGCGTGGCAGGTCAAGG  950

seq1  GCCCAG-TTAGC-TGCC-TCTCTCCATATTCCCC--CCCTT-CTCCAAG-  982
      |||||| ||||| |||| ||||||||||||||||  ||||| || |||| 
seq2  GCCCAGTTTAGCTTGCCTTCTCTCCATATTCCCCCTCCCTTCCTTCAAGT  1000

seq1  TTGCAT-GGTCCTC-AGGCTT-CGGA-GTGCTTCC-AGCACC-ACT-GGC  1025
      |||||| ||||||| |||||| |||| |||||||| |||||| ||| |||
seq2  TTGCATGGGTCCTCAAGGCTTCCGGAGGTGCTTCCAAGCACCAACTGGGC  1050

seq1  CCACCT--CTCTG-CCAG-TCCCTTT-GTCTGGCTGA-CCCTTTCTTC-T  1068
      ||||||  ||||| |||| ||||||| |||||||||| |||||||||| |
seq2  CCACCTTCCTCTGTCCAGTTCCCTTTGGTCTGGCTGACCCCTTTCTTCTT  1100

seq1  TTTCCACAGGTTAGACCAGACAC-TGCTTCCTCCGG  1103
      ||||||||||||||||   |||| ||||||||||||
seq2  TTTCCACAGGTTAGACAGAACACGTGCTTCCTCCGG  1136