BAC Information

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BAC

Clone NameB6Ng01-236D01
Chromosome9 (Build37)
Map Location 22,625,483 - 22,805,586
singlet/doubletdoublet
Overlap geneBbs9
Upstream geneDock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603, Anln, 9530077C05Rik, rp9, LOC100041870, LOC100040805
Downstream geneBmper, LOC100040866, LOC100040878, LOC100040893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236D01.bB6Ng01-236D01.g
ACCGA047470GA047471
length1,1781,058
definitionB6Ng01-236D01.b B6Ng01-236D01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,804,405 - 22,805,586)(22,625,483 - 22,626,538)
sequence
gaattcttttactcctggctaagagtaagtatcattaaaccatccctggg
ggctgtttctttttcttctctatccaacattccataaaacaaaagccagt
taatctgtgaatttctaccctcctccaataccatttttaatagacaaaca
gtcccctgggttccccaaattccttccctggcagcacagatggaagtgga
tagctaagatgtaagagcaaaccttgctaggctctcctccactgggaccc
agaaggcagagctgggtagatgtattcgtttgctgaggctgctgtaacaa
aaaaccctgactgattagctgaaaccacagagctacagtgagagtcctga
gaaccctgagggaagggtgtgttccaggctatgtctttatattctacctt
ctttctttgatagagtgtgtttaaattcacctttcgactctgaaatctgg
tctgggaagttggcactagcctctgaaaacatgaataaatatcagctcca
tcatattatccccattaacacactgtctagaaatggtatgcaaatgtaga
gagagagtgtcacctctgtcccctccctggaagtgatttttctcaagcat
atagtctcccaaaccaatgtagtcatgttacaaaatagtgtcctgacaca
catgacacctcacttgtttttagtgaacttaacactgagctaaaaggaga
aagaagccggacagatggcagtaaggcagagaagtagctgcttcggtgtg
agttgcagtctgccgcttggcaagatggaaatgttccctatttggggctc
attttcagttcagcacatgcacatcacttcctgggtacccctcattagag
tctctcctcagaagccacctctctgcctcactagcaacatgagctctctg
cctgctgcccacctccccagcaccctgtctttttgatatggccattgccc
ccttgctgatagtatcctcaaaaacctgaatcctttgaagagaagaggcc
atgtttttatgacagcagacctggcgatacaaagaagaagtgccttgtct
atgtgcagtacagccagatcatccaaactcatggtgttaaccactgagct
gtctttattggagcagaaagccacagaccgactcactttccttctggaat
cagtttttcgtaaaatgtctacccacaa
gaattccttggacaggacattgctgctcttatttcttactcctgtcacgt
gaccctgtgagcccacatgtacagatggaagcatgtagaatacccatgtt
taccctcacctggctgtaagtgggagctgtcttttctttggactattctt
attggaagtattacagtgggagcccaactgtgtgaaattttcagtatcat
taaaaattgcacagctgagccaaaaggaagggccccttagtcactctcat
ggaagatgttttctgaggctttgtatcctgtgaaaaaaaaggtcacatat
tctactgatatttctgggatttctaatatgagggtgaaatttgatgttta
tttcaacagtttctggcaataaaaataaaattatgaagaattgccactga
ataaccacagacctctagcccctcccacagcccaaatttttaaaaatcta
cttatttatttatttatacctattcactttccatcccccttcctggtcac
ccccctctcacaacccttctcccatccctgctccccttctcctgggtggg
tgggtgccacctgggtatctcccaccctggcacttcaactctgcaaggct
gggtgcttcctcttccaatgaggccagacgaggcagcccagctagaacac
atcccacagacatgaaacagcttttggaacagcctcgctccaagctacac
atctgctgtgtatgtgcggggaagactaggtattgtccatgtatgctctg
tgcccaacccaatttttatcctctgagctatcactcatacctgctgtcac
atcaacgagcctgtcctcagcagtcacactgtgctggctctcctcagatt
tgtagtgactatgtatcttgttgtctctgcttgcctttggctcctcattc
ctactttctttctgagtaatcaaaattttaacaataagataaatctgtct
ctctcatcaatgggaaactcatgaacagtattgacagtgtactaattatt
tttttcattttctttcagatctgtaggaatagctatagaagtgattttaa
tactttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_22804405_22805586
seq2: B6Ng01-236D01.b_45_1222 (reverse)

seq1  TTGTGGGTAGACATTTTTACAGAAAAACTGGATCTCAGGAAAGAAGGGTG  50
      ||||||||||||| |||||| |||||||| ||| ||  ||| |||     
seq2  TTGTGGGTAGACA-TTTTAC-GAAAAACT-GAT-TCCAGAAGGAA-----  41

seq1  GGGGTGGGGGTCTGTGCTTTTCTGCTCC-ATAAGGACAGCTCAGTGTTTA  99
       | | |  ||||||||  |||||||||| |||| |||||||||||| |||
seq2  AGTGAGTCGGTCTGTGGCTTTCTGCTCCAATAAAGACAGCTCAGTGGTTA  91

seq1  CCACCATTGAGTTTTGATGGTCT-GCTGTTACTGCACATAGACAA-GCAC  147
       ||||| ||||||| |||| ||| |||| |||||||||||||||| ||||
seq2  ACACCA-TGAGTTTGGATGATCTGGCTG-TACTGCACATAGACAAGGCAC  139

seq1  -TCTTCTTTGTATCGCCAGGTCTGCTGTCAT-AAAACATGGCCTC-TCTC  194
       |||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  TTCTTCTTTGTATCGCCAGGTCTGCTGTCATAAAAACATGGCCTCTTCTC  189

seq1  TTC-AAGGATTCAGGTTTTTGAGGATACTATCAGCAAGGGGGCAATGGCC  243
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGGATTCAGGTTTTTGAGGATACTATCAGCAAGGGGGCAATGGCC  239

seq1  ATATCAAAAAGACAGGGTGCTGGGGAGGTGGGCAGCAGGCAGAGAGCTCA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAAAAGACAGGGTGCTGGGGAGGTGGGCAGCAGGCAGAGAGCTCA  289

seq1  TGTTGCTAGTGAGGCAGAGAGGTGGCTTCTGAGGAGAGACTCTAATGAGG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTAGTGAGGCAGAGAGGTGGCTTCTGAGGAGAGACTCTAATGAGG  339

seq1  GGTACCCAGGAAGTGATGTGCATGTGCTGAACTGAAAATGAGCCCCAAAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCCAGGAAGTGATGTGCATGTGCTGAACTGAAAATGAGCCCCAAAT  389

seq1  AGGGAACATTTCCATCTTGCCAAGCGGCAGACTGCAACTCACACCGAAGC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACATTTCCATCTTGCCAAGCGGCAGACTGCAACTCACACCGAAGC  439

seq1  AGCTACTTCTCTGCCTTACTGCCATCTGTCCGGCTTCTTTCTCCTTTTAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTTCTCTGCCTTACTGCCATCTGTCCGGCTTCTTTCTCCTTTTAG  489

seq1  CTCAGTGTTAAGTTCACTAAAAACAAGTGAGGTGTCATGTGTGTCAGGAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGTTAAGTTCACTAAAAACAAGTGAGGTGTCATGTGTGTCAGGAC  539

seq1  ACTATTTTGTAACATGACTACATTGGTTTGGGAGACTATATGCTTGAGAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTGTAACATGACTACATTGGTTTGGGAGACTATATGCTTGAGAA  589

seq1  AAATCACTTCCAGGGAGGGGACAGAGGTGACACTCTCTCTCTACATTTGC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACTTCCAGGGAGGGGACAGAGGTGACACTCTCTCTCTACATTTGC  639

seq1  ATACCATTTCTAGACAGTGTGTTAATGGGGATAATATGATGGAGCTGATA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATTTCTAGACAGTGTGTTAATGGGGATAATATGATGGAGCTGATA  689

seq1  TTTATTCATGTTTTCAGAGGCTAGTGCCAACTTCCCAGACCAGATTTCAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCATGTTTTCAGAGGCTAGTGCCAACTTCCCAGACCAGATTTCAG  739

seq1  AGTCGAAAGGTGAATTTAAACACACTCTATCAAAGAAAGAAGGTAGAATA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGAAAGGTGAATTTAAACACACTCTATCAAAGAAAGAAGGTAGAATA  789

seq1  TAAAGACATAGCCTGGAACACACCCTTCCCTCAGGGTTCTCAGGACTCTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACATAGCCTGGAACACACCCTTCCCTCAGGGTTCTCAGGACTCTC  839

seq1  ACTGTAGCTCTGTGGTTTCAGCTAATCAGTCAGGGTTTTTTGTTACAGCA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGCTCTGTGGTTTCAGCTAATCAGTCAGGGTTTTTTGTTACAGCA  889

seq1  GCCTCAGCAAACGAATACATCTACCCAGCTCTGCCTTCTGGGTCCCAGTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGCAAACGAATACATCTACCCAGCTCTGCCTTCTGGGTCCCAGTG  939

seq1  GAGGAGAGCCTAGCAAGGTTTGCTCTTACATCTTAGCTATCCACTTCCAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGCCTAGCAAGGTTTGCTCTTACATCTTAGCTATCCACTTCCAT  989

seq1  CTGTGCTGCCAGGGAAGGAATTTGGGGAACCCAGGGGACTGTTTGTCTAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTGCCAGGGAAGGAATTTGGGGAACCCAGGGGACTGTTTGTCTAT  1039

seq1  TAAAAATGGTATTGGAGGAGGGTAGAAATTCACAGATTAACTGGCTTTTG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGGTATTGGAGGAGGGTAGAAATTCACAGATTAACTGGCTTTTG  1089

seq1  TTTTATGGAATGTTGGATAGAGAAGAAAAAGAAACAGCCCCCAGGGATGG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGGAATGTTGGATAGAGAAGAAAAAGAAACAGCCCCCAGGGATGG  1139

seq1  TTTAATGATACTTACTCTTAGCCAGGAGTAAAAGAATTC  1182
      |||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGATACTTACTCTTAGCCAGGAGTAAAAGAATTC  1178

seq1: chr9_22625483_22626538
seq2: B6Ng01-236D01.g_63_1120

seq1  GAATTCCTTGGACAGGACATTGCTGCTCTTATTTCTTACTCCTGTCACGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGACAGGACATTGCTGCTCTTATTTCTTACTCCTGTCACGT  50

seq1  GACCCTGTGAGCCCACATGTACAGATGGAAGCATGTAGAATACCCATGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGTGAGCCCACATGTACAGATGGAAGCATGTAGAATACCCATGTT  100

seq1  TACCCTCACCTGGCTGTAAGTGGGAGCTGTCTTTTCTTTGGACTATTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCACCTGGCTGTAAGTGGGAGCTGTCTTTTCTTTGGACTATTCTT  150

seq1  ATTGGAAGTATTACAGTGGGAGCCCAACTGTGTGAAATTTTCAGTATCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAGTATTACAGTGGGAGCCCAACTGTGTGAAATTTTCAGTATCAT  200

seq1  TAAAAATTGCACAGCTGAGCCAAAAGGAAGGGCCCCTTAGTCACTCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTGCACAGCTGAGCCAAAAGGAAGGGCCCCTTAGTCACTCTCAT  250

seq1  GGAAGATGTTTTCTGAGGCTTTGTATCCTGTGAAAAAAAAGGTCACATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATGTTTTCTGAGGCTTTGTATCCTGTGAAAAAAAAGGTCACATAT  300

seq1  TCTACTGATATTTCTGGGATTTCTAATATGAGGGTGAAATTTGATGTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGATATTTCTGGGATTTCTAATATGAGGGTGAAATTTGATGTTTA  350

seq1  TTTCAACAGTTTCTGGCAATAAAAATAAAATTATGAAGAATTGCCACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACAGTTTCTGGCAATAAAAATAAAATTATGAAGAATTGCCACTGA  400

seq1  ATAACCACAGACCTCTAGCCCCTCCCACAGCCCAAATTTTTAAAAATCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCACAGACCTCTAGCCCCTCCCACAGCCCAAATTTTTAAAAATCTA  450

seq1  CTTATTTATTTATTTATACCTATTCACTTTCCATCCCCCTTCCTGGTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTATTTATTTATACCTATTCACTTTCCATCCCCCTTCCTGGTCAC  500

seq1  CCCCCTCTCACAACCCTTCTCCCATCCCTGCTCCCCTTCTCCTGGGTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCTCACAACCCTTCTCCCATCCCTGCTCCCCTTCTCCTGGGTGGG  550

seq1  TGGGTGCCACCTGGGTATCTCCCACCCTGGCACTTCAACTCTGCAAGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCCACCTGGGTATCTCCCACCCTGGCACTTCAACTCTGCAAGGCT  600

seq1  GGGTGCTTCCTCTTCCAATGAGGCCAGACGAGGCAGCCCAGCTAGAACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTTCCTCTTCCAATGAGGCCAGACGAGGCAGCCCAGCTAGAACAC  650

seq1  ATCCCACAGACATGAAACAGCTTTTGGAACAGCCTCGCTCCAAGCTACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACAGACATGAAACAGCTTTTGGAACAGCCTCGCTCCAAGCTACAC  700

seq1  ATCTGCTGTGTATGTGCGGGGAAGACTAGGTATTGTCCATGTATGCTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTGTGTATGTGCGGGGAAGACTAGGTATTGTCCATGTATGCTCTG  750

seq1  TGCCCAACCCAATTTTTATCCTCTGAGCTATCACTCATACCTGCTGTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAACCCAATTTTTATCCTCTGAGCTATCACTCATACCTGCTGTCAC  800

seq1  ATCAACGAGCCTGTCCTCAGCAGTCACACTGTGCTGGCTCTCCTCAGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACGAGCCTGTCCTCAGCAGTCACACTGTGCTGGCTCTCCTCAGATT  850

seq1  TGTAGTGACTATGTATCTTGTTGTCTCTGCTTGCCTTTGGCTCCTCATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGACTATGTATCTTGTTGTCTCTGCTTGCCTTTGGCTCCTCATTC  900

seq1  CTACTTTCTTTCTGAGTAATCAAAATTTTAACAATAAGATAAATCTGTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTCTTTCTGAGTAATCAAAATTTTAACAATAAGATAAATCTGTCT  950

seq1  CTCTCATCAAT-GGAAACTCATGAACAGTATTGACAGTGTACTAATTA-T  998
      ||||||||||| |||||||||||||||||||||||||||||||||||| |
seq2  CTCTCATCAATGGGAAACTCATGAACAGTATTGACAGTGTACTAATTATT  1000

seq1  TTTTTCATTTTCTTTCAGATCTGTAGG-ATAGCTATAGAAGTGATTTTAA  1047
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTTTCATTTTCTTTCAGATCTGTAGGAATAGCTATAGAAGTGATTTTAA  1050

seq1  TTACTTTAA  1056
       ||||||||
seq2  -TACTTTAA  1058