BAC Information

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BAC

Clone NameB6Ng01-237F12
Chromosome9 (Build37)
Map Location 22,767,159 - 22,911,029
singlet/doubletdoublet
Overlap genenone
Upstream geneEpor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603, Anln, 9530077C05Rik, rp9, LOC100041870, Bbs9, LOC100040805
Downstream geneBmper, LOC100040866, LOC100040878, LOC100040893, Npsr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237F12.bB6Ng01-237F12.g
ACCGA048329GA048330
length1,182182
definitionB6Ng01-237F12.b B6Ng01-237F12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,767,159 - 22,768,333)(22,910,848 - 22,911,029)
sequence
gaattcagctcctcttgtccgggagatttatgtttcccagaaggcctatt
tcaccctctctatcagtagtcacattgttactgcatttctcagtcacaaa
aaagatctccagactagaccattgaccataaatgctcagtttactattga
attctgattattttcttaatttggagaaaaatcaaactgtttagcaaaat
caggtttaagcttgggattagcaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaagcagtcttcaaattcttatctggaaaattttaaatctccaaaaatt
cctacctttgagggcctgcctcttaagctttctgagtcaagttcaggtct
cttaaattcccaaaagagtacacagctcatattcccagctctgggcctct
gcttccttcattggctgatcatgttgtattatgccactgtgtttctgcca
agggctcacccctgaaagtggcttctcttcctctctttaactatcatgta
gtcttcagaagtccttaggcttctaggtcattagacaaaaaaacaaaaca
aaacaaaatcaaaaacaaaaacaaaaacaaaacaaccccaaaaccctatg
tacaaaatggactttaactctcaggggataatttatcagtctgtctactt
tctcttctgcgttagatggggcccaggaaaggctgtacttgggatcatgg
tttgcttggatcttggaatgggttccctttcctgcctggttccggttatg
ctgtgactgctctcatctggaaaccttgaccttgtcccacatttccttat
gtttgcagctgataaagacatcacctacatttcctctgagttgtggttgg
agtctgaaatgtcaaccatatttgaatgattgttggttctgtaaacttgg
aaaggtttgggacccagctgacagaagtactcagtagggtccagtcagtg
agagttatatacccaccctcctagttcctgcttttctcagtgcttcatgg
tctgctggtgatttcctcactttaccaacatgtttccatcaacatggtct
taacactccagtgtcctcccagaatatgatggatggattcctcttgatac
tggttgccagaatcctcctccctaggttacacatcaggatatcaccaagc
aatgctacggcaggtgttcctagacttgccag
tttgtaagttcttcaatgccattttttactaggggctattactattggat
ttgtacttctgggtgttgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtttgcactatttgctgtttttatttctccattgggat
ttgtgcaaatttagttaatttgttgtgttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_22767159_22768333
seq2: B6Ng01-237F12.b_49_1230

seq1  GAATTCAGCTCCTCTTGTCCGGGAGATTTATGTTTCCCAGAAGGCCTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTCCTCTTGTCCGGGAGATTTATGTTTCCCAGAAGGCCTATT  50

seq1  TCACCCTCTCTATCAGTAGTCACATTGTTACTGCATTTCTCAGTCACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTCTCTATCAGTAGTCACATTGTTACTGCATTTCTCAGTCACAAA  100

seq1  AAAGATCTCCAGACTAGACCATTGACCATAAATGCTCAGTTTACTATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCTCCAGACTAGACCATTGACCATAAATGCTCAGTTTACTATTGA  150

seq1  ATTCTGATTATTTTCTTAATTTGGAGAAAAATCAAACTGTTTAGCAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGATTATTTTCTTAATTTGGAGAAAAATCAAACTGTTTAGCAAAAT  200

seq1  CAGGTTTAAGCTTGGGATTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTAAGCTTGGGATTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA  250

seq1  AAAAGCAGTCTTCAAATTCTTATCTGGAAAATTTTAAATCTCCAAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGTCTTCAAATTCTTATCTGGAAAATTTTAAATCTCCAAAAATT  300

seq1  CCTACCTTTGAGGGCCTGCCTCTTAAGCTTTCTGAGTCAAGTTCAGGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTTTGAGGGCCTGCCTCTTAAGCTTTCTGAGTCAAGTTCAGGTCT  350

seq1  CTTAAATTCCCAAAAGAGTACACAGCTCATATTCCCAGCTCTGGGCCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATTCCCAAAAGAGTACACAGCTCATATTCCCAGCTCTGGGCCTCT  400

seq1  GCTTCCTTCATTGGCTGATCATGTTGTATTATGCCACTGTGTTTCTGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTTCATTGGCTGATCATGTTGTATTATGCCACTGTGTTTCTGCCA  450

seq1  AGGGCTCACCCCTGAAAGTGGCTTCTCTTCCTCTCTTTAACTATCATGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCACCCCTGAAAGTGGCTTCTCTTCCTCTCTTTAACTATCATGTA  500

seq1  GTCTTCAGAAGTCCTTAGGCTTCTAGGTCATTAGACAAAAAAACAAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAGAAGTCCTTAGGCTTCTAGGTCATTAGACAAAAAAACAAAACA  550

seq1  AAACAAAATCAAAAACAAAAACAAAAACAAAACAACCCCAAAACCCTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAATCAAAAACAAAAACAAAAACAAAACAACCCCAAAACCCTATG  600

seq1  TACAAAATGGACTTTAACTCTCAGGGGATAATTTATCAGTCTGTCTACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATGGACTTTAACTCTCAGGGGATAATTTATCAGTCTGTCTACTT  650

seq1  TCTCTTCTGCGTTAGATGGGGCCCAGGAAAGGCTGTACTTGGGATCATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTGCGTTAGATGGGGCCCAGGAAAGGCTGTACTTGGGATCATGG  700

seq1  TTTGCTTGGATCTTGGAATGGGTTCCCTTTCCTGCCTGGTTCCGGTTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTGGATCTTGGAATGGGTTCCCTTTCCTGCCTGGTTCCGGTTATG  750

seq1  CTGTGACTGCTCTCATCTGGAAACCTTGACCTTGTCCCACATTTCCTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACTGCTCTCATCTGGAAACCTTGACCTTGTCCCACATTTCCTTAT  800

seq1  GTTTGCAGCTGATAAAGACATCACCTACATTTCCTCTGAGTTGTGGTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAGCTGATAAAGACATCACCTACATTTCCTCTGAGTTGTGGTTGG  850

seq1  AGTCTGAAATGTCAACCATATTTGAATGATTGTTGGTTCTGTAAACTTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAAATGTCAACCATATTTGAATGATTGTTGGTTCTGTAAACTTGG  900

seq1  AA--GGTTGGGACCCAGCTGACAG-AGTACTCAGTAGGGTCCAGTCAGTG  947
      ||  | |||||||||||||||||| |||||||||||||||||||||||||
seq2  AAAGGTTTGGGACCCAGCTGACAGAAGTACTCAGTAGGGTCCAGTCAGTG  950

seq1  AGAGTTATATACCCA-CCTCCTAGTTCCTGCTTTTCTCAGTGCTTCATGG  996
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGAGTTATATACCCACCCTCCTAGTTCCTGCTTTTCTCAGTGCTTCATGG  1000

seq1  TCTGCT-GTGA-TTCCTCACCTTTACC-ACATGTTTCCATCACCATGGTC  1043
      |||||| |||| ||||||| ||||||| |||||||||||||| |||||||
seq2  TCTGCTGGTGATTTCCTCA-CTTTACCAACATGTTTCCATCAACATGGTC  1049

seq1  TT-ACACTCCAGTGTCCTCCCAG-ATATGATGGATGGA-TCCTC-TGATA  1089
      || |||||||||||||||||||| |||||||||||||| ||||| |||||
seq2  TTAACACTCCAGTGTCCTCCCAGAATATGATGGATGGATTCCTCTTGATA  1099

seq1  CTGTGTGCCCAGATCCCTCCTCCCTTAAGTTACACCATCAGG-GATCACC  1138
      ||| ||  |||||  ||||||||| || |||||| |||||||  ||||||
seq2  CTG-GTTGCCAGAATCCTCCTCCC-TAGGTTACA-CATCAGGATATCACC  1146

seq1  ACAGCAATGCTACAGCAGTGTG-TCCTTGGCTTGCCAG  1175
      | ||||||||||| |||| ||| |||| | ||||||||
seq2  A-AGCAATGCTACGGCAG-GTGTTCCTAGACTTGCCAG  1182

seq1: chr9_22910848_22911029
seq2: B6Ng01-237F12.g_72_253 (reverse)

seq1  AAAAACACAACAAATTAACTAAATTTGCACAAATCCCAATGGAGAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACACAACAAATTAACTAAATTTGCACAAATCCCAATGGAGAAATAA  50

seq1  AAACAGCAAATAGTGCAAACACACACACACACACACACACACACACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCAAATAGTGCAAACACACACACACACACACACACACACACACAC  100

seq1  ACACACACACACATCAACACCCAGAAGTACAAATCCAATAGTAATAGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACATCAACACCCAGAAGTACAAATCCAATAGTAATAGCCC  150

seq1  CTAGTAAAAAATGGCATTGAAGAACTTACAAA  182
      ||||||||||||||||||||||||||||||||
seq2  CTAGTAAAAAATGGCATTGAAGAACTTACAAA  182