BAC Information

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BAC

Clone NameB6Ng01-237J14
Chromosome9 (Build37)
Map Location 89,117,164 - 89,118,293
singlet/doubletsinglet
Overlap geneMthfs
Upstream geneEG272633, Nt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b
Downstream geneAF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237J14.bB6Ng01-237J14.g
ACCGA048510GA048511
length1,1331,175
definitionB6Ng01-237J14.b B6Ng01-237J14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccctctgtgcccttccacatctctgtccacaggagaagtttttca
tagctccctgtccctagctctgagtgttcagagcctaaatatttcaccca
gccagtccttgagcagccctttcctcctcaaccaatcacccttgttaaca
ccgatactccccatcccacctactcactggacccctggccctctgcatcc
ttagcctgtcagcacactgaccactgcaggaagttaagaaaataaatcta
ctgaacaaagcacagatgtctcaaaactctttagagttcgcatcactgga
ctaggttacttgcctattatactatcttaggaataaaacctaactgtgag
tctaccagagaggtcattcaataaatatcatatatggttagtactttatt
acaacaattaatagcctttaaaaaaaaaaaagtattgagctgggatccag
ttagacaagggcttgcctagcatgccttgaagacctgagttcaatccccg
gtatagcataaacaaggaatagttgtagatacctaaaatcaaagtacttg
ctagggtcagacataaagaatcaggagctcacaaggtcaaggccatcttt
agctacttggtaattccaagccagcatggagtataagagactccacctta
aaaacaaaacaacccactaaagtaaataaaatgaaaataaaaaaaaaaaa
agaaactgaaaagtatctaaaagttagaaaaatataaacatgaaatcctt
ctaaatctgtccaccttagcctttctttttcttcatctatgtattcaaaa
aaagaatttatgtgtgtgtgtggtgtttcaggagacatacagtctcacta
cgtaactcaggctggccacaaactcacgaggatactcctgccgtagtttc
cagaatgctagaaaaacaggcagttgcaggcatgtcccatcaacccagtt
tccctttcctctcttaacttctttcctaaaacatataaatatctaaagca
ataattatactgcactgttgggatgcataatacatagaaacataatttat
atgatacaaacggaagaggacctcatacagaagcaaactccctgtatttt
tattgcaattaggtaaccgagatctgaaacaga
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagagagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctatccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggataaccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggtaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccttatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
gggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaa
cacagaagtggatgcccacagtcagctaatggatggatcacagggctccc
aatggaggagctagagaaagcacccaagagctaaagggatctgcaaccct
ataggtggatcaacatatggactaccagtacccggagctctgactctagc
tgcatattgtatcaaagaatgctagtcgtcatcactgggaaagagaaggt
ccatgaaccacaactttaatgccagaaccaggaacgctcaggtccaaaaa
tgggcttgggtccgtcgtatgatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_89117164_89118293
seq2: B6Ng01-237J14.b_47_1179 (reverse)

seq1  TCTGTTTCAGATCTCTGTTTACTAAATTCCAAT-AAAATACAGGGAGTTT  49
      ||||||||||||||| | ||||  |||| |||| ||||||||||||||||
seq2  TCTGTTTCAGATCTC-GGTTACCTAATTGCAATAAAAATACAGGGAGTTT  49

seq1  GCTTCTGTATGAGTTCCTCTCCCTTTTGTATCATATAAATTATGTTTCTA  99
      ||||||||||||| |||||| || ||||||||||||||||||||||||||
seq2  GCTTCTGTATGAGGTCCTCTTCCGTTTGTATCATATAAATTATGTTTCTA  99

seq1  TGTATTATGCAT-CCAACAGTGCAGTATAATTATTGCTTTAGATATTTAT  148
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGTATTATGCATCCCAACAGTGCAGTATAATTATTGCTTTAGATATTTAT  149

seq1  ATGTTTTAGGAAAG-AGTTAAGAGAGGAAA-GGAAACTGGGTTGATGGGA  196
      |||||||||||||| ||||||||||||||| |||||||||||||||||||
seq2  ATGTTTTAGGAAAGAAGTTAAGAGAGGAAAGGGAAACTGGGTTGATGGGA  199

seq1  CATGCCTGCAACTGCCTGTTTTTCTAGCATTCTGGAAACTACGGCAGGAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTGCAACTGCCTGTTTTTCTAGCATTCTGGAAACTACGGCAGGAG  249

seq1  TATCCTCGTGAGTTTGTGGCCAGCCTGAGTTACGTAGTGAGACTGTATGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTCGTGAGTTTGTGGCCAGCCTGAGTTACGTAGTGAGACTGTATGT  299

seq1  CTCCTGAAACACCACACACACACATAAATTCTTTTTTTGAATACATAGAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAAACACCACACACACACATAAATTCTTTTTTTGAATACATAGAT  349

seq1  GAAGAAAAAGAAAGGCTAAGGTGGACAGATTTAGAAGGATTTCATGTTTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAAGAAAGGCTAAGGTGGACAGATTTAGAAGGATTTCATGTTTA  399

seq1  TATTTTTCTAACTTTTAGATACTTTTCAGTTTCTTTTTTTTTTTTTATTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCTAACTTTTAGATACTTTTCAGTTTCTTTTTTTTTTTTTATTT  449

seq1  TCATTTTATTTACTTTAGTGGGTTGTTTTGTTTTTAAGGTGGAGTCTCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTATTTACTTTAGTGGGTTGTTTTGTTTTTAAGGTGGAGTCTCTT  499

seq1  ATACTCCATGCTGGCTTGGAATTACCAAGTAGCTAAAGATGGCCTTGACC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCATGCTGGCTTGGAATTACCAAGTAGCTAAAGATGGCCTTGACC  549

seq1  TTGTGAGCTCCTGATTCTTTATGTCTGACCCTAGCAAGTACTTTGATTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGCTCCTGATTCTTTATGTCTGACCCTAGCAAGTACTTTGATTTT  599

seq1  AGGTATCTACAACTATTCCTTGTTTATGCTATACCGGGGATTGAACTCAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATCTACAACTATTCCTTGTTTATGCTATACCGGGGATTGAACTCAG  649

seq1  GTCTTCAAGGCATGCTAGGCAAGCCCTTGTCTAACTGGATCCCAGCTCAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAAGGCATGCTAGGCAAGCCCTTGTCTAACTGGATCCCAGCTCAA  699

seq1  TACTTTTTTTTTTTTAAAGGCTATTAATTGTTGTAATAAAGTACTAACCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTTTTTTTTAAAGGCTATTAATTGTTGTAATAAAGTACTAACCA  749

seq1  TATATGATATTTATTGAATGACCTCTCTGGTAGACTCACAGTTAGGTTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGATATTTATTGAATGACCTCTCTGGTAGACTCACAGTTAGGTTTT  799

seq1  ATTCCTAAGATAGTATAATAGGCAAGTAACCTAGTCCAGTGATGCGAACT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAAGATAGTATAATAGGCAAGTAACCTAGTCCAGTGATGCGAACT  849

seq1  CTAAAGAGTTTTGAGACATCTGTGCTTTGTTCAGTAGATTTATTTTCTTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAGTTTTGAGACATCTGTGCTTTGTTCAGTAGATTTATTTTCTTA  899

seq1  ACTTCCTGCAGTGGTCAGTGTGCTGACAGGCTAAGGATGCAGAGGGCCAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTGCAGTGGTCAGTGTGCTGACAGGCTAAGGATGCAGAGGGCCAG  949

seq1  GGGTCCAGTGAGTAGGTGGGATGGGGAGTATCGGTGTTAACAAGGGTGAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCAGTGAGTAGGTGGGATGGGGAGTATCGGTGTTAACAAGGGTGAT  999

seq1  TGGTTGAGGAGGAAAGGGCTGCTCAAGGACTGGCTGGGTGAAATATTTAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGAGGAGGAAAGGGCTGCTCAAGGACTGGCTGGGTGAAATATTTAG  1049

seq1  GCTCTGAACACTCAGAGCTAGGGACAGGGAGCTATGAAAAACTTCTCCTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGAACACTCAGAGCTAGGGACAGGGAGCTATGAAAAACTTCTCCTG  1099

seq1  TGGACAGAGATGTGGAAGGGCACAGAGGGAATTC  1130
      ||||||||||||||||||||||||||||||||||
seq2  TGGACAGAGATGTGGAAGGGCACAGAGGGAATTC  1133