BAC Information

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BAC

Clone NameB6Ng01-237J23
Chromosome9 (Build37)
Map Location 109,690,569 - 109,825,022
singlet/doubletdoublet
Overlap gene1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a
Upstream geneIhpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109
Downstream geneLOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237J23.bB6Ng01-237J23.g
ACCGA048528GA048529
length795631
definitionB6Ng01-237J23.b B6Ng01-237J23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,824,228 - 109,825,022)(109,690,569 - 109,691,203)
sequence
gaattcctgtgggcaccgtccatgctgactcgattagaattcagggaact
tagcaggagagcattactaaaacttttttatttggaaattatttcaaact
tagttgaaaaatcacaagaataagtattctttaccgagcttcagctattt
taaacattgtgcccatttgcttaatcacgttgcctgcacatgcacattct
acccagtttcttcattttaaggattgttcatttatttatattcaggcttt
tagcccctaaatattccaaggtatatttcttagtaataacaatacagata
tcaatccctatgtcacttaaaactgattgtgattcaagagtctatctagc
tgacggtgatggtgcacacctttaatcctaatcccagagaggaagaagca
ggtggggtttgaagccaacctactctacacagagagttaaaggccagcca
agatggcacagctgagaccctgtctcagaaataaacaagagttctatctg
agcagagctggatcacagctccatatacttggacatgcctatagtcctag
cacccatgaagcagagccaggaacagcagtgaaggtttgaggccagcctg
tttaatgtagggttctaggtcaatctagactactgagagaagaaaaagag
ttctctctaatcaagcatctagattctaattttgtcagttgacccaaaaa
tataataatagtatttcttttcctccagagatacttagcttttatacgta
tgcctgctatatatatatatgtgtgtgtgtgtgtgtgtgtgtgta
gaattcaccatacagacaacagacttgtcttgtccctttcttgttatgcc
acaccctgagatataacatgcatagccacaaggtcctgcaaggaaacccc
aacaatatatgggcagcagacagttgagggacaactcaacctgaaggagg
tatggttcatttccctctactttgtagaaggcttgggaaaagctgtggaa
aggatgaagtgagaggcaatcaagcacactgcaggctggacattagttca
gaaacatttactctttaatatgtttttatagatacaaaatgggtctgggg
cctggagctgtgactcctgggcagagttctcggttgtattctgaaaggcc
aataagctggaactcactactaatttggaggcagaaaagtccgaagtgca
ttggtgtgtgttacatgaagggtttgaggtctactggtagtacatgagat
cctgtcgaaagaaagaaagaaagaaagagagagagagagagagagagaga
gagagagagagaggaaggaaggaaggaaggaaggaaggaaggaaggaaag
aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa
agaaagggagagagagagagagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_109824228_109825022
seq2: B6Ng01-237J23.b_51_845 (reverse)

seq1  TACACACACACACACACACACACACATATATATATATAGCAGGCATACGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACACACACACACACACACATATATATATATAGCAGGCATACGT  50

seq1  ATAAAAGCTAAGTATCTCTGGAGGAAAAGAAATACTATTATTATATTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGCTAAGTATCTCTGGAGGAAAAGAAATACTATTATTATATTTTT  100

seq1  GGGTCAACTGACAAAATTAGAATCTAGATGCTTGATTAGAGAGAACTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAACTGACAAAATTAGAATCTAGATGCTTGATTAGAGAGAACTCTT  150

seq1  TTTCTTCTCTCAGTAGTCTAGATTGACCTAGAACCCTACATTAAACAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTCTCAGTAGTCTAGATTGACCTAGAACCCTACATTAAACAGGC  200

seq1  TGGCCTCAAACCTTCACTGCTGTTCCTGGCTCTGCTTCATGGGTGCTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCAAACCTTCACTGCTGTTCCTGGCTCTGCTTCATGGGTGCTAGG  250

seq1  ACTATAGGCATGTCCAAGTATATGGAGCTGTGATCCAGCTCTGCTCAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAGGCATGTCCAAGTATATGGAGCTGTGATCCAGCTCTGCTCAGAT  300

seq1  AGAACTCTTGTTTATTTCTGAGACAGGGTCTCAGCTGTGCCATCTTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCTTGTTTATTTCTGAGACAGGGTCTCAGCTGTGCCATCTTGGCT  350

seq1  GGCCTTTAACTCTCTGTGTAGAGTAGGTTGGCTTCAAACCCCACCTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTAACTCTCTGTGTAGAGTAGGTTGGCTTCAAACCCCACCTGCTT  400

seq1  CTTCCTCTCTGGGATTAGGATTAAAGGTGTGCACCATCACCGTCAGCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTCTGGGATTAGGATTAAAGGTGTGCACCATCACCGTCAGCTAG  450

seq1  ATAGACTCTTGAATCACAATCAGTTTTAAGTGACATAGGGATTGATATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTCTTGAATCACAATCAGTTTTAAGTGACATAGGGATTGATATCT  500

seq1  GTATTGTTATTACTAAGAAATATACCTTGGAATATTTAGGGGCTAAAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTTATTACTAAGAAATATACCTTGGAATATTTAGGGGCTAAAAGC  550

seq1  CTGAATATAAATAAATGAACAATCCTTAAAATGAAGAAACTGGGTAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATATAAATAAATGAACAATCCTTAAAATGAAGAAACTGGGTAGAAT  600

seq1  GTGCATGTGCAGGCAACGTGATTAAGCAAATGGGCACAATGTTTAAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGTGCAGGCAACGTGATTAAGCAAATGGGCACAATGTTTAAAATA  650

seq1  GCTGAAGCTCGGTAAAGAATACTTATTCTTGTGATTTTTCAACTAAGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGCTCGGTAAAGAATACTTATTCTTGTGATTTTTCAACTAAGTTT  700

seq1  GAAATAATTTCCAAATAAAAAAGTTTTAGTAATGCTCTCCTGCTAAGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAATTTCCAAATAAAAAAGTTTTAGTAATGCTCTCCTGCTAAGTTC  750

seq1  CCTGAATTCTAATCGAGTCAGCATGGACGGTGCCCACAGGAATTC  795
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATTCTAATCGAGTCAGCATGGACGGTGCCCACAGGAATTC  795

seq1: chr9_109690569_109691203
seq2: B6Ng01-237J23.g_66_696

seq1  GAATTCACCATACAGACAACAGACTTGTCTTGTCCCTTTCTTGTTATGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATACAGACAACAGACTTGTCTTGTCCCTTTCTTGTTATGCC  50

seq1  ACACCCTGAGATATAACATGCATAGCCACAAGGTCCTGCAAGGAAACCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTGAGATATAACATGCATAGCCACAAGGTCCTGCAAGGAAACCCC  100

seq1  AACAATATATGGGCAGCAGACAGTTGAGGGACAACTCAACCTGAAGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATATGGGCAGCAGACAGTTGAGGGACAACTCAACCTGAAGGAGG  150

seq1  TATGGTTCATTTCCCTCTACTTTGTAGAAGGCTTGGGAAAAGCTGTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTCATTTCCCTCTACTTTGTAGAAGGCTTGGGAAAAGCTGTGGAA  200

seq1  AGGATGAAGTGAGAGGCAATCAAGCACACTGCAGGCTGGACATTAGTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGAAGTGAGAGGCAATCAAGCACACTGCAGGCTGGACATTAGTTCA  250

seq1  GAAACATTTACTCTTTAATATGTTTTTATAGATACAAAATGGGTCTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATTTACTCTTTAATATGTTTTTATAGATACAAAATGGGTCTGGGG  300

seq1  CCTGGAGCTGTGACTCCTGGGCAGAGTTCTCGGTTGTATTCTGAAAGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGCTGTGACTCCTGGGCAGAGTTCTCGGTTGTATTCTGAAAGGCC  350

seq1  AATAAGCTGGAACTCACTACTAATTTGGAGGCAGAAAAGTCCGAAGTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCTGGAACTCACTACTAATTTGGAGGCAGAAAAGTCCGAAGTGCA  400

seq1  TTGGTGTGTGTTACATGAAGGGTTTGAGGTCTACTGGTAGTACATGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTGTGTTACATGAAGGGTTTGAGGTCTACTGGTAGTACATGAGAT  450

seq1  CCTGTCGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGA  500

seq1  GAGAGAGAGAGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAG  550
      |||||||||||||||||||||||||||||||||||||||||||||    |
seq2  GAGAGAGAGAGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG----G  546

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  596

seq1  AGAAAGAAAGGGAGAGAGAGAGAGAGAGAGAGAGA  635
      |||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGGGAGAGAGAGAGAGAGAGAGAGAGA  631