BAC Information

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BAC

Clone NameB6Ng01-239N11
Chromosome9 (Build37)
Map Location 121,861,964 - 122,037,415
singlet/doubletdoublet
Overlap geneC730027P07Rik, C85492, LOC100040121
Upstream geneCtnnb1, Ulk4, Trak1, Cck, Lyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1
Downstream geneSnrk, Tmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239N11.bB6Ng01-239N11.g
ACCGA050161GA050162
length950806
definitionB6Ng01-239N11.b B6Ng01-239N11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,036,871 - 122,037,415)(121,861,964 - 121,862,767)
sequence
gaattcagtgatgcagccaacactcagtgatgattaccaaagtgagctgc
tgggttttgctaaaactttatcaacaaaagtgatacagggtcccagaaga
ccctaatgagatcctccagtaatatcaggaaccacaggtcaggtacagtg
aacacagccctattacgtattttctagtgttctctttatccaaaattagc
aatactccggtgtgtctcctccttctgggagtaaccatgtaaattaaaga
ccaacacccacaacaggtcaacaggccctaagttttggaagaactagagt
tctgtactggagaagggtgtgctaaaaattactatgggtttattataact
gtatcagcctgcactcactggacagactcactgtggcattaaaattaaga
ggtaagccaataactcctattagaaatgtcctaacaggcagagttacatc
ctcaaatctaaggactttggaaagaaaggtgccttgtgggaccatgaaag
gcaacctgttttctggtcgagttaggttcaaatcccagaaacccaacaga
ttaatctgcaagggacagaaggcccatttgccatgctcccagacataggc
tcctgacatgaggacccagctccatcattctgtggctatcagtcacttag
gctatagccaggtatgctccttcccacagttaccctgcaacagcaaggta
gcccagcccactataaaagctgatgcttggcccctcctctctcccttaag
ctcttgctctcactgtcacctttagcctccttctcctcctctcctctccc
ctctctccagtggccatggcttctacttccctactcttctccctctctgc
ctttctacaataaacacagtaaaaccatggaccatctctgtttcactgag
atctggccatgctggagcatggaagcaggcttccccctaaagagccgcca

gaattcacatccccgagtcttggctggggcagcaggtttgtggctttatg
cttaggagccaagttggggagcgatttttccagaaatgccatcagccaag
agctagctaacagctaaggaggggctgggactagggaggagagagctgta
tttgtggatggcaactagagagggaggcatgaagatgcacggggctagct
ctgtggatagcctttcctgtgtcctgacagcccgagagtgtagcatgaga
tggctttcctcggcagtgcagtgtttcttctcactggcacggcagttgaa
aggtggtagtcatggtccggtgctcatcacaggcacaggttgagctttgt
gtcgtggctagtgagactgtatcaacaagagaagtctgattccttccagc
tccggccttggctctgtcccaccatgccctgaggtaatttctcacactct
gggctgaaggagactttcatgttttcatcaaggaataaaaagttgacttg
gttcttaagaatgcttgatgacacatctgaagtaggacgcatagtaggac
gcgtagcctctgtaagatgagttcagggagtgatgatttcaaaacacaaa
gaacccacaactctcttcatcctttctccaaaggaaaggaaggctccaac
ctggagctcataggaaaactggcagccacaaggaaggagaggagagagat
ggggagggcagtgagggttgtcgcccagaggtgctgtgctgtgtggcacg
ccttgtcagtgaggtggcagtgtctgtgatggtctgcatgggagcggggc
ctggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_122036871_122037415
seq2: B6Ng01-239N11.b_47_591 (reverse)

seq1  TGGGTTTCTGGGATTTGAACCTAACTCGACCAGAAAACAGGTTGCCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTCTGGGATTTGAACCTAACTCGACCAGAAAACAGGTTGCCTTTC  50

seq1  ATGGTCCCACAAGGCACCTTTCTTTCCAAAGTCCTTAGATTTGAGGATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCCCACAAGGCACCTTTCTTTCCAAAGTCCTTAGATTTGAGGATGT  100

seq1  AACTCTGCCTGTTAGGACATTTCTAATAGGAGTTATTGGCTTACCTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGCCTGTTAGGACATTTCTAATAGGAGTTATTGGCTTACCTCTTA  150

seq1  ATTTTAATGCCACAGTGAGTCTGTCCAGTGAGTGCAGGCTGATACAGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATGCCACAGTGAGTCTGTCCAGTGAGTGCAGGCTGATACAGTTA  200

seq1  TAATAAACCCATAGTAATTTTTAGCACACCCTTCTCCAGTACAGAACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAACCCATAGTAATTTTTAGCACACCCTTCTCCAGTACAGAACTCT  250

seq1  AGTTCTTCCAAAACTTAGGGCCTGTTGACCTGTTGTGGGTGTTGGTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTCCAAAACTTAGGGCCTGTTGACCTGTTGTGGGTGTTGGTCTTT  300

seq1  AATTTACATGGTTACTCCCAGAAGGAGGAGACACACCGGAGTATTGCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACATGGTTACTCCCAGAAGGAGGAGACACACCGGAGTATTGCTAA  350

seq1  TTTTGGATAAAGAGAACACTAGAAAATACGTAATAGGGCTGTGTTCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGATAAAGAGAACACTAGAAAATACGTAATAGGGCTGTGTTCACTG  400

seq1  TACCTGACCTGTGGTTCCTGATATTACTGGAGGATCTCATTAGGGTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGACCTGTGGTTCCTGATATTACTGGAGGATCTCATTAGGGTCTTC  450

seq1  TGGGACCCTGTATCACTTTTGTTGATAAAGTTTTAGCAAAACCCAGCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCCTGTATCACTTTTGTTGATAAAGTTTTAGCAAAACCCAGCAGC  500

seq1  TCACTTTGGTAATCATCACTGAGTGTTGGCTGCATCACTGAATTC  545
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTGGTAATCATCACTGAGTGTTGGCTGCATCACTGAATTC  545

seq1: chr9_121861964_121862767
seq2: B6Ng01-239N11.g_68_873

seq1  GAATTCACATCCCCGAGTCTTGGCTGGGGCAGCAGGTTTGTGGCTTTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATCCCCGAGTCTTGGCTGGGGCAGCAGGTTTGTGGCTTTATG  50

seq1  CTTAGGAGCCAAGTTGGGGAGCGATTTTTCCAGAAATGCCATCAGCCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGAGCCAAGTTGGGGAGCGATTTTTCCAGAAATGCCATCAGCCAAG  100

seq1  AGCTAGCTAACAGCTAAGGAGGGGCTGGGACTAGGGAGGAGAGAGCTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCTAACAGCTAAGGAGGGGCTGGGACTAGGGAGGAGAGAGCTGTA  150

seq1  TTTGTGGATGGCAACTAGAGAGGGAGGCATGAAGATGCACGGGGCTAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGATGGCAACTAGAGAGGGAGGCATGAAGATGCACGGGGCTAGCT  200

seq1  CTGTGGATAGCCTTTCCTGTGTCCTGACAGCCCGAGAGTGTAGCATGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGATAGCCTTTCCTGTGTCCTGACAGCCCGAGAGTGTAGCATGAGA  250

seq1  TGGCTTTCCTCGGCAGTGCAGTGTTTCTTCTCACTGGCACGGCAGTTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTCCTCGGCAGTGCAGTGTTTCTTCTCACTGGCACGGCAGTTGAA  300

seq1  AGGTGGTAGTCATGGTCCGGTGCTCATCACAGGCACAGGTTGAGCTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTAGTCATGGTCCGGTGCTCATCACAGGCACAGGTTGAGCTTTGT  350

seq1  GTCGTGGCTAGTGAGACTGTATCAACAAGAGAAGTCTGATTCCTTCCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTGGCTAGTGAGACTGTATCAACAAGAGAAGTCTGATTCCTTCCAGC  400

seq1  TCCGGCCTTGGCTCTGTCCCACCATGCCCTGAGGTAATTTCTCACACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGCCTTGGCTCTGTCCCACCATGCCCTGAGGTAATTTCTCACACTCT  450

seq1  GGGCTGAAGGAGACTTTCATGTTTTCATCAAGGAATAAAAAGTTGACTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAAGGAGACTTTCATGTTTTCATCAAGGAATAAAAAGTTGACTTG  500

seq1  GTTCTTAAGAATGCTTGATGACACATCTGAAGTAGGACGCATAGTAGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTAAGAATGCTTGATGACACATCTGAAGTAGGACGCATAGTAGGAC  550

seq1  GCGTAGCCTCTGTAAGATGAGTTCAGGGAGTGATGATTTCAAAACACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTAGCCTCTGTAAGATGAGTTCAGGGAGTGATGATTTCAAAACACAAA  600

seq1  GAACCCACAACTCTCTTCATCCTTTCTCCAAAGGAAAGGAAGGCTCCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCACAACTCTCTTCATCCTTTCTCCAAAGGAAAGGAAGGCTCCAAC  650

seq1  CTGGAGCTCATAGGAAAACTGGCAGCCACAAGGAAGGAGAGGAGAGAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCTCATAGGAAAACTGGCAGCCACAAGGAAGGAGAGGAGAGAGAT  700

seq1  GGGGAGGGCAGTGAGGG-TGTCGCCCAGAGGTGCTGTGCTGTGTGGCACG  749
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGGGAGGGCAGTGAGGGTTGTCGCCCAGAGGTGCTGTGCTGTGTGGCACG  750

seq1  CCTTGTCAGGGAGGTGGCAGTGTCTGTGATGGTCTGTAT-GGAGCGGGGC  798
      ||||||||| |||||||||||||||||||||||||| || ||||||||||
seq2  CCTTGTCAGTGAGGTGGCAGTGTCTGTGATGGTCTGCATGGGAGCGGGGC  800

seq1  CTGGTC  804
      ||||||
seq2  CTGGTC  806