BAC Information

Click to search

BAC

Clone NameB6Ng01-241D01
Chromosome9 (Build37)
Map Location 93,603,732 - 93,604,300
singlet/doubletsinglet
Overlap geneLOC674371
Upstream geneLOC100039944, LOC667009, LOC100040114
Downstream geneLOC384967, EG384968, 1190002N15Rik, EG667601, Slc9a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241D01.bB6Ng01-241D01.g
ACCGA051169GA051170
length5821,171
definitionB6Ng01-241D01.b B6Ng01-241D01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacactgcatagaagggactgcattggctcttatgggagatgcaa
agattgggagctgtggttcttcattgaaagaacagataatatggtacaga
tataaactacgtcaaaatgctgtaattcaagttagcacatgacaattccc
attagagttttcttcctgctgtctttccagccttctttccttttgacttc
aacatatagtaataaatttattttatgttgtgtgcttatataaaactaag
acaaaggtgtcagggggcactgttgtaacttcacaatgtatatatcttct
aatgccttctattattttgtgtttctttacagttattcacaggtatagag
tcattacctgccattcacagaacagtcatagctaacatatttaaaatgag
aagctatatgtgtaagtagacacagcaagaagccatcaaacaaggccact
ccgtgatagaaagcaatttcttctctctctctctctctctctctctctct
ctctctctctctctctctctctctgctctgtctctctctctctctctctc
tctctctctctctctctctctctctctctctc

gaattctcacctgaggaatactgaatggctgagaaacacctgaaaaaaat
gttcagcatccttaatcatcagtgaaatgcaaatcaaaacaaccctgaga
ttcaatctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
cagatgctggtgagtatgtggagaaagggaaacattcctccactgttggt
gggattgcaagcttgtacaaccactctggaaatcagtctggcagtttctc
agaaaattggacatggtactatgggagtatcctgcaatacctctcctggg
catatatctagaagatgttccaactagtaagaaagacacatgctccacta
tgttcatagcagccttatttataatagccagaagctgaaaagatctcaga
tgcccctcaacagaggaatggatacaaaaaatgtgatacatttacacaat
ggagtactactcagctattaaaaagaatgaatttgtgaaattcctaggca
aatggttggacctggagggcgttatcatgagtgagctaacccaatcacaa
aagacctcaaatgatatgtactcactgataagtggatattagcccagaaa
tttagaatacccgagatataagttacgttttgcagaacatatgaaattca
agaaaacgaagaccaaagtttggacactttgtcccttcttagaattggga
acaaaacacccattgaaagtgttatagagagaaagtttggagctgagaca
aaaggatggaccatctagagactgccatatccagggatccatcccataat
cagcctccaaacactgacaccactgaatacactagcaagcttgtgctgat
aggaccctgatatagtagtctctagtgagacgatactggggcctagcaaa
ctcataagtagatgctcacagtcagctattggatgggatcacatggtccc
caatggagagctagagaaaataccaaggagctaagggatctgcacctata
ggtggacagcattatgaactaaccagtaccccagagctctgactctagct
gcatatgtatcaaaagatgctagtggtcatcactgaaagagagttcattg
gacttgcactttatatgcttcagtacaggaacgtcaccagccaaaaaagg
tgctagttcggggtggtgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_93603732_93604300
seq2: B6Ng01-241D01.b_44_604

seq1  GAATTCACACTGCATAGAAGGGACTGCATTGGCTCTTATGGGAGATGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTGCATAGAAGGGACTGCATTGGCTCTTATGGGAGATGCAA  50

seq1  AGATTGGGAGCTGTGGTTCTTCATTGAAAGAACAGATAATATGGTACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGGGAGCTGTGGTTCTTCATTGAAAGAACAGATAATATGGTACAGA  100

seq1  TATAAACTACGTCAAAATGCTGTAATTCAAGTTAGCACATGACAATTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACTACGTCAAAATGCTGTAATTCAAGTTAGCACATGACAATTCCC  150

seq1  ATTAGAGTTTTCTTCCTGCTGTCTTTCCAGCCTTCTTTCCTTTTGACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGTTTTCTTCCTGCTGTCTTTCCAGCCTTCTTTCCTTTTGACTTC  200

seq1  AACATATAGTAATAAATTTATTTTATGTTGTGTGCTTATATAAAACTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATAGTAATAAATTTATTTTATGTTGTGTGCTTATATAAAACTAAG  250

seq1  ACAAAGGTGTCAGGGGGCACTGTTGTAACTTCACAATGTATATATCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGTGTCAGGGGGCACTGTTGTAACTTCACAATGTATATATCTTCT  300

seq1  AATGCCTTCTATTATTTTGTGTTTCTTTACAGTTATTCACAGGTATAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTTCTATTATTTTGTGTTTCTTTACAGTTATTCACAGGTATAGAG  350

seq1  TCATTACCTGCCATTCACAGAACAGTCATAGCTAACATATTTAAAATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACCTGCCATTCACAGAACAGTCATAGCTAACATATTTAAAATGAG  400

seq1  AAGCTATATGTGTAAGTAGACACAGCAAGAAGCCATCAAACAAGGCCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATATGTGTAAGTAGACACAGCAAGAAGCCATCAAACAAGGCCACT  450

seq1  CCGTGATAGAAAGCAATTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGATAGAAAGCAATTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  500

seq1  CTCTCTCTCTCTCTCTCTCTCTCT-CTCTCTCTCTCTCTCTCTCTCTTCT  549
      |||||||||||||||||||||||| |||| ||||||||||||||||    
seq2  CTCTCTCTCTCTCTCTCTCTCTCTGCTCTGTCTCTCTCTCTCTCTC----  546

seq1  TTCTTTCTCTCTCTTTCTCT  569
           ||||||||| |||||
seq2  -----TCTCTCTCTCTCTCT  561


| Home | SequenceCutter | Blast | Download |