BAC Information

Click to search

BAC

Clone NameB6Ng01-242N14
Chromosome9 (Build37)
Map Location 27,853,419 - 27,854,396
singlet/doubletsinglet
Overlap geneOpcml
Upstream geneNcapd3, Jam3, Igsf9b, Spata19, LOC666440, LOC100041202
Downstream geneHnt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242N14.bB6Ng01-242N14.g
ACCGA052385GA052386
length1,199993
definitionB6Ng01-242N14.b B6Ng01-242N14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagttatatcctctaattgataagattttgagagaactggataat
ataaattctaaattaaatacacaaaatcagaaaaagttgaaaggtcgaaa
tagaacaaagaaaagggaagaaatggaaaacagtagcagaaacagtcaac
attaagttggctctgtcaaacatctcctgacacacctatagtccaagtat
accaaccagaacacaggctgccagacagggtagaaaaacaagaactaact
tatgttgcataaggaaatttactataactataaagactagaaagattgta
ggtggtagataggtagatatgttaaaaataaaatgatagagaaggtatat
gctaatactaataaaaaagagaaagtgtattaatttcaggacaggttaaa
ttatcaagcataatttaagtgatacagtagcttcagatatagttaggaag
ctttctctcccagaggacctaagttcagtgcctatgttgagtgactttca
acttcctataactccagatctagaggatctgacttcttgcttcctcagta
gctacatatacccctcaggtacatttatctacacacacacacacacacac
acacacacacacacacacgaacacatacaattaaataaaataaataaaaa
gattaatgcaaaattatgtgtcattaacaactcttgaggtgtgtctacat
cagagtggcagcatatatgaggcaaaaaaaaaaacaatcatagaactgaa
aataaatcatacaactccattatcacagtagagaatttcaagaccactcc
atcagaatagacagaaacaaaaggcagaaaatcaatacagacatagttga
attcaacagatccaaaaattaactgaatgtgtttcacatctctagagtac
tttattcaaaacagataattggcacattgttctaaagcttgcatgggaca
ttcactgagactgaccacacctgggacaagaaatacacctcagcaaattg
aagcaggatggaaattttttcagtatcattctattctcagagcacaaatg
aattaactataaaacgttgcagaaagtgaatagataatgtcagaaattta
tagaacaaaacatgtactctgaatacatatggtcaaaagaaattccagag
agtaacattttgaactagcagaattaaaacaaagtgttaacatatgaga

gaattctttcaaatgctggtgtgctgagaattgaggagtggatggcacag
atgtggggctcttaagactttttgaaagataaatgaaggaaaacagattt
ggatttttttttctgtttctgttttctttataaagaaaagctcaccctta
atatctaatggactgaaatccggaagaggtaagctggcatgttgatcagt
ggtagagtatttacctacaatgtgtggaactctggttttacccacaaatc
aagtagaagactgaagattcccaattggttaaagctgccatctgtgagga
ccagagatgaaagggaggggggatacagaggcattagtaggactctgctc
tctatagggagtgggttagtttgaggaggaagcagagaatagagaaagga
atgcaaatggactgcagagactctgcagggacatcaccagaacagtggga
gaactcactgtgagtgctgagctgaggcctgaaagccagtgtgccctctt
tctcactgcctggtattttctggcttattcaccccttttatttccctacc
ctttcatttgaaagcatgttggagtagccaaggtcagaatgtctttgtct
cagtgtcgtacttctggatacagagagaatcaccagtcttctgttaataa
gtatgtttctaatcacattgagatatctgggtaaatctttaaatatcgta
attgccagtcataaggtatttcctacaacagagaggcatgtttttctagg
caccatgagtcttatatttctagaaaccattttctgataatcagattctt
atatttgaaatcttcagataaattttccttcaagctattattactgtatg
gtgatctgtccctttattttgtttttcactcttgtcatcttttatagagg
acctgacccttctcatggaagaatggcactccccaccttgaacagcaaga
gggggtggtcttaagtttaggttttttccattgctggtgaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_27853419_27854396
seq2: B6Ng01-242N14.g_67_1059

seq1  GAATTCTTTCAAATGCTGGTGTGCTGAGAATTGAGGAGTGGATGGCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAAATGCTGGTGTGCTGAGAATTGAGGAGTGGATGGCACAG  50

seq1  ATGTGGGGCTCTTAAGACTTTTTGAAAGATAAATGAAGGAAAACAGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGGCTCTTAAGACTTTTTGAAAGATAAATGAAGGAAAACAGATTT  100

seq1  GGATTTTTTTTTCTGTTTCTGTTTTCTTTATAAAGAAAAGCTCACCCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTTTTTTCTGTTTCTGTTTTCTTTATAAAGAAAAGCTCACCCTTA  150

seq1  ATATCTAATGGACTGAAATCCGGAAGAGGTAAGCTGGCATGTTGATCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTAATGGACTGAAATCCGGAAGAGGTAAGCTGGCATGTTGATCAGT  200

seq1  GGTAGAGTATTTACCTACAATGTGTGGAACTCTGGTTTTACCCACAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGTATTTACCTACAATGTGTGGAACTCTGGTTTTACCCACAAATC  250

seq1  AAGTAGAAGACTGAAGATTCCCAATTGGTTAAAGCTGCCATCTGTGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAAGACTGAAGATTCCCAATTGGTTAAAGCTGCCATCTGTGAGGA  300

seq1  CCAGAGATGAAAGGGAGGGGGGATACAGAGGCATTAGTAGGACTCTGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGATGAAAGGGAGGGGGGATACAGAGGCATTAGTAGGACTCTGCTC  350

seq1  TCTATAGGGAGTGGGTTAGTTTGAGGAGGAAGCAGAGAATAGAGAAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGGGAGTGGGTTAGTTTGAGGAGGAAGCAGAGAATAGAGAAAGGA  400

seq1  ATGCAAATGGACTGCAGAGACTCTGCAGGGACATCACCAGAACAGTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAATGGACTGCAGAGACTCTGCAGGGACATCACCAGAACAGTGGGA  450

seq1  GAACTCACTGTGAGTGCTGAGCTGAGGCCTGAAAGCCAGTGTGCCCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTGTGAGTGCTGAGCTGAGGCCTGAAAGCCAGTGTGCCCTCTT  500

seq1  TCTCACTGCCTGGTATTTTCTGGCTTATTCACCCCTTTTATTTCCCTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTGCCTGGTATTTTCTGGCTTATTCACCCCTTTTATTTCCCTACC  550

seq1  CTTTCATTTGAAAGCATGTTGGAGTAGCCAAGGTCAGAATGTCTTTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTTGAAAGCATGTTGGAGTAGCCAAGGTCAGAATGTCTTTGTCT  600

seq1  CAGTGTCGTACTTCTGGATACAGAGAGAATCACCAGTCTTCTGTTAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCGTACTTCTGGATACAGAGAGAATCACCAGTCTTCTGTTAATAA  650

seq1  GTATGTTTCTAATCACATTGAGATATCTGGGTAAATCTTTAAATATCGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTTCTAATCACATTGAGATATCTGGGTAAATCTTTAAATATCGTA  700

seq1  ATTGCCAGTCATAAGGTATTTCCTACAACAGAGAGGCATGTTTTTCTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCAGTCATAAGGTATTTCCTACAACAGAGAGGCATGTTTTTCTAGG  750

seq1  CACCATGAGTCTTATA-TTCTAGAAACCA-TTTCTGATAATCAGATTCTT  798
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  CACCATGAGTCTTATATTTCTAGAAACCATTTTCTGATAATCAGATTCTT  800

seq1  ATATT--GAATCTTCAGATAAATTTTCCTTCAAGCTATTATTACTGTATG  846
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGAAATCTTCAGATAAATTTTCCTTCAAGCTATTATTACTGTATG  850

seq1  GTGATCTGTCCC-TTATTTTG-TTTTCACTCTTGTCATCTTTTATAGAGG  894
      |||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  GTGATCTGTCCCTTTATTTTGTTTTTCACTCTTGTCATCTTTTATAGAGG  900

seq1  ACCTGA-CCTTCTCATGGAAGAAT-GCACTCCCCACCTTGAACAGCAAGA  942
      |||||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  ACCTGACCCTTCTCATGGAAGAATGGCACTCCCCACCTTGAACAGCAAGA  950

seq1  GGGG--TGTCTTA--GTTAGG--TTTTCCATTGCT-GTGAAGA  978
      ||||   ||||||   |||||  |||||||||||| |||||||
seq2  GGGGGTGGTCTTAAGTTTAGGTTTTTTCCATTGCTGGTGAAGA  993


| Home | SequenceCutter | Blast | Download |