MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-244J06
Chromosome	9 (Build37)
Map Location	52,613,800 - 52,614,956
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876, AI593442, Gm1715
Downstream gene	Ddx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404, LOC100038958
Link	Open Mouse BAC browser

Click to get alignment info.

name	Arhgap20 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244867 MGI:2445175
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC629554 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:629554
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100043409 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043409
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Fdx1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14148 MGI:103224
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG629557 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:629557 MGI:3646966
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 90 ESTs, 25 Proteins

name	Rdx (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19684 MGI:97887
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9830163H01Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:414109 MGI:3041213
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zc3h12c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244871 MGI:3026959
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 24 ESTs, 11 Proteins

name	LOC100042876 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042876
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	AI593442 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:330941 MGI:2143099
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Gm1715 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:382139 MGI:2686561
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Ddx10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77591 MGI:1924841
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 145 ESTs, 7 Proteins

name	Exph5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320051 MGI:2443248
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kdelc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68304 MGI:1923765
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930550C14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75311 MGI:1922561
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atm (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11920 MGI:107202
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Npat (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244879 MGI:107605
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Acat1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110446 MGI:87870
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cul5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75717 MGI:1922967
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rab39 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:270160 MGI:2442855
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG434404 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:434404 MGI:3643565
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 mRNAs, 1756 ESTs, 7 Proteins

name	LOC100038958 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038958
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins

name	Arhgap20 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:47575839 GeneID:244867 MGI:2445175
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Rho GTPase activating protein 20 transcript_id : NM_175535.3

name	LOC100043409 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259966 GeneID:100043409
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical protein LOC100043409 transcript_id : XM_001480159.1

name	Fdx1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679764 GeneID:14148 MGI:103224
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ferredoxin 1 transcript_id : NM_007996.1

name	EG629557 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94386106 GeneID:629557 MGI:3646966
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 90 ESTs, 25 Proteins product : predicted gene, EG629557 transcript_id : XM_894456.2

name	Rdx (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142353663 GeneID:19684 MGI:97887
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : radixin transcript_id : NM_009041.2

name	9830163H01Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:47894414 GeneID:414109 MGI:3041213
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9830163H01 gene transcript_id : NM_001001500.1

name	Zc3h12c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94386107 GeneID:244871 MGI:3026959
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 24 ESTs, 11 Proteins product : zinc finger CCCH type containing 12C transcript_id : XM_146893.6

name	LOC100042876 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259932 GeneID:100042876
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : similar to Btf3 protein transcript_id : XM_001478980.1

name	AI593442 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31342698 GeneID:330941 MGI:2143099
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AI593442 transcript_id : NM_177907.2

name	AI593442 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142381639 GeneID:330941 MGI:2143099
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AI593442 transcript_id : NM_178906.3

name	Gm1715 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259934 GeneID:382139 MGI:2686561
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : gene model 1715, (NCBI) transcript_id : XM_001478987.1

name	Ddx10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94386109 GeneID:77591 MGI:1924841
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 145 ESTs, 7 Proteins product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 transcript_id : XM_284494.5

name	Exph5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31341147 GeneID:320051 MGI:2443248
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : exophilin 5 transcript_id : NM_176846.2

name	Kdelc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:55956900 GeneID:68304 MGI:1923765
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : KDEL (Lys-Asp-Glu-Leu) containing 2 transcript_id : NM_212445.2

name	4930550C14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802091 GeneID:75311 MGI:1922561
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930550C14 gene transcript_id : NM_029247.2

name	Atm (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6680739 GeneID:11920 MGI:107202
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ataxia telangiectasia mutated homolog (human) transcript_id : NM_007499.1

name	Npat (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487234 GeneID:244879 MGI:107605
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear protein in the AT region transcript_id : NM_001081152.1

name	Acat1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130035 GeneID:110446 MGI:87870
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acetyl-Coenzyme A acetyltransferase 1 transcript_id : NM_144784.3

name	Cul5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142343675 GeneID:75717 MGI:1922967
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cullin 5 transcript_id : NM_027807.2

name	Rab39 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133891651 GeneID:270160 MGI:2442855
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAB39, member RAS oncogene family transcript_id : NM_175562.3

name	EG434404 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259968 GeneID:434404 MGI:3643565
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 mRNAs, 1756 ESTs, 7 Proteins product : predicted gene, EG434404 transcript_id : XM_486222.5

name	LOC100038958 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259970 GeneID:100038958
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins product : similar to Ubtf protein transcript_id : XM_001471979.1

name	Arhgap20 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47575840 CCDS:CCDS23177.1 GeneID:244867 MGI:2445175
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005096 - GTPase activator activity [Evidence IEA] GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : Rho GTPase activating protein 20 protein_id : NP_780744.2

name	LOC100043409 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259967 GeneID:100043409
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480209.1

name	Fdx1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679765 CCDS:CCDS23178.1 GeneID:14148 MGI:103224
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0009055 - electron carrier activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : adrenodoxin product : ferredoxin 1 protein_id : NP_032022.1

name	EG629557 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82930042 GeneID:629557 MGI:3646966
definition	codon_start : 1 product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) protein_id : XP_899549.1

name	Rdx (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6677699 GeneID:19684 MGI:97887
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005902 - microvillus [Evidence IDA] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005488 - binding [Evidence IEA]; GO:0008092 - cytoskeletal protein binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0045176 - apical protein localization [Evidence IMP]; GO:0051016 - barbed-end actin filament capping [Evidence IEA]; GO:0030033 - microvillus biogenesis [Evidence IMP] codon_start : 1 exception : mismatches in translation product : radixin protein_id : NP_033067.1

name	9830163H01Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47894415 GeneID:414109 MGI:3041213
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC414109 protein_id : NP_001001500.1

name	Zc3h12c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94386108 GeneID:244871 MGI:3026959
definition	codon_start : 1 product : similar to hCG39183 protein_id : XP_146893.6

name	LOC100042876 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259933 GeneID:100042876
definition	codon_start : 1 product : similar to Btf3 protein protein_id : XP_001479030.1

name	AI593442 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244544 GeneID:330941 MGI:2143099
definition	codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : hypothetical protein LOC330941 isoform 1 protein_id : NP_808575.1

name	AI593442 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30725766 GeneID:330941 MGI:2143099
definition	codon_start : 1 exception : unclassified translation discrepancy note : isoform 2 is encoded by transcript variant 2 product : hypothetical protein LOC330941 isoform 2 protein_id : NP_849237.1

name	Gm1715 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149259935 GeneID:382139 MGI:2686561
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479037.1

name	Ddx10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82930055 GeneID:77591 MGI:1924841
definition	codon_start : 1 product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 protein_id : XP_284494.3

name	Exph5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28849901 CCDS:CCDS23181.1 GeneID:320051 MGI:2443248
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0017137 - Rab GTPase binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006886 - intracellular protein transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : synaptotagmin-like homologue lacking C2 domains b protein_id : NP_789816.1

name	Kdelc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47078285 CCDS:CCDS23182.1 GeneID:68304 MGI:1923765
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA] codon_start : 1 product : KDEL (Lys-Asp-Glu-Leu) containing 2 protein protein_id : NP_997610.1

name	4930550C14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312924 CCDS:CCDS23183.1 GeneID:75311 MGI:1922561
definition	codon_start : 1 product : hypothetical protein LOC75311 protein_id : NP_083523.1

name	Atm (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680740 GeneID:11920 MGI:107202
definition	GO_component : GO:0005634 - nucleus [Evidence TAS]; GO:0005819 - spindle [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0016303 - phosphatidylinositol 3-kinase activity [Evidence ISS]; GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence TAS] [Evidence IDA]; GO:0047485 - protein N-terminus binding [Evidence ISS]; GO:0004674 - protein serine/threonine kinase activity [Evidence TAS] [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007420 - brain development [Evidence IGI]; GO:0007049 - cell cycle [Evidence IEA]; GO:0000077 - DNA damage checkpoint [Evidence IMP]; GO:0008630 - DNA damage response, signal transduction resulting in induction of apoptosis [Evidence IMP]; GO:0006281 - DNA repair [Evidence IDA] [Evidence IMP]; GO:0007292 - female gamete generation [Evidence IMP]; GO:0007507 - heart development [Evidence IGI]; GO:0007094 - mitotic spindle checkpoint [Evidence ISS]; GO:0045786 - negative regulation of progression through cell cycle [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IDA]; GO:0006974 - response to DNA damage stimulus [Evidence TAS]; GO:0010212 - response to ionizing radiation [Evidence ISS]; GO:0001756 - somitogenesis [Evidence IGI] codon_start : 1 exception : mismatches in translation note : ataxia telangiectasia gene mutated in human beings product : ataxia telangiectasia mutated homolog protein_id : NP_031525.1

name	Npat (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487235 GeneID:244879 MGI:107605
definition	codon_start : 1 product : nuclear protein in the AT region protein_id : NP_001074621.1

name	Acat1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450129 CCDS:CCDS23184.1 GeneID:110446 MGI:87870
definition	GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IDA]; GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : acetyl-Coenzyme A acetyltransferase 1 precursor protein_id : NP_659033.1

name	Cul5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28076981 GeneID:75717 MGI:1922967
definition	GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : vasopressin-activated calcium-mobilizing receptor protein product : cullin 5 protein_id : NP_082083.1

name	Rab39 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30425356 CCDS:CCDS23185.1 GeneID:270160 MGI:2442855
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 product : RAB39, member RAS oncogene family protein_id : NP_780771.1

name	EG434404 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82929979 GeneID:434404 MGI:3643565
definition	codon_start : 1 product : hypothetical protein protein_id : XP_486222.2

name	LOC100038958 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259971 GeneID:100038958
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472029.1

name	LOC629554 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149259931 GeneID:629554
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC629554 transcript_id : XR_035395.1

clone name	MSMg01-348O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369G03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495F07
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-155M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-300B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-292F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-081E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495J09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-125N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-116D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408C17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-234A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-399F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-361F10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-172J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372C17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-413A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-277N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-146H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-327L24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479D05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-268B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395C14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507M16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-083N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-087B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-475A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-157N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118K03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-106D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-297E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266F11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-054J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-047L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-327I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185D05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-048F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436O07
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-345I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489G04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-271E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375L14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-112A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491K24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053F02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-147H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205I24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-344B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066J21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210E20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-254O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093E22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039D05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-156O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-072O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244J06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003J21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-199C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080A05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-206N02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001K02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148E13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-048E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162A21
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-244J06.b	B6Ng01-244J06.g
ACC	GA053676	GA053677
length	1,072	1,142
definition	B6Ng01-244J06.b	B6Ng01-244J06.g
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	gaattctgtaggcttcttttatgatcatgggcatctctttctttatgttt gggaagttttcttctattattttgttgaagatattagctggtgctttaat ttgaaaatcttcattctcatcaactcctattatccgtaggtttggtctcc tcattgtgtcctggatttcctggatgttttgagttaggatccttttgcat tttgtattttctttgactgttgtgtcgatgttctgcacctgagattctct cttctatttcttgtattctgttgctgatgcttgcatctatggttccagat ctctttcctagggtttctatctccagcgttgcctcgctttgggttttctt tattgtgtctacttccctttttagttctagtatggttttgctcatttcca tcacctgtttggatgtgttttcctgtttttctttaaggacttctacctgt ttggttgtgttttcctgcttttctttaagggcctgtaactctttagcagt gctctcctgtaattctttaagtgacttatgaaagtccttcttgatgtcct ctatcatcatcatgagaaatgtttttaaatctgggtctagattttcggtt gtgttggggtgcccaggactaggtggggagggagtgctgcgttctgatga tggtgagtggtcttgatttctgttagtaggattcttacatttgcctttcg ccatctggtaatctctgaagctagctgttatagttgtctctggtaagagc ttgttcttcaggtgactctgttagcctctataagcagacctgggaggcta gctctctccttagtttcagtgggcagagtattctctgcaggcaagctctc ttcttgcaggaaggtaccagatatctggtgtttgaacctgccccttggca gaagttgtgttccactcactagaggtcttaggatcccgtggggattcctg tgtggacccttgccggtgtcagtgactccgcttgcagtaccccgttgctt cgagtgacctattaccgcatctcaggttcacgtgaatgatgggcaaacgc tggttcactccacagaggtctt	gaattcttttggttttgtgcttcatgtaaattagtattttaatggaggtt tgattcaattcaggttccatcttttgtaaagaatgttgatctgtgttctt gcaacaacaagtgaaagcatatgcttttatttctagtctctatgattttt tttaatatttcagtgtattgagatattgccagtctatttaatccatttta aaactccccattcacttaataaacttaaaaaaccaaatccgcttgataag ttgcttatatccattatttcactagggatggcaaacccagaaaattccaa atcccatctttagttactaacttgaattcttccccacacacaagaaacaa aacaaaagcctatcaactccttggctaatctgttatggatcataaaagat ataaaaaattcattattgagttattttagttttatgttctgtaatagtcc tcaattttttgttaagtataattaattcatatattttaatccttcattac atgctttgggatattgtagttattgttactttcatgtgcgaattatccca cttggggccaaagggatcctctccagttagtgcccctgtcatctggacac aagtcggtagactctggtggcgacttgccttcttctctgacatggtaaca gggtcactttccacatttctatcaccttcacttatacagtgccttcagta tctctggggtccaacccaatcatttgatggaaaacatccttttaaaggtt gcatctgtattgaacaatttattccctaaacattacattataacaaccat caaaaacatttacattgcattagatattctaaattgctcacaggtgcttt acagtgtaaaggagaatattttcagactatatgttttctggtgtggattt gagactcagtctctcaatataccaaggtaaaattatatgtgacaagttat ttttttgctagttgtcatcattttttatacttttccagaaataatctagc agctatggatttgtaaagagaaatgcacacattcaaatgaatatttcatt aatagcctagtagaataagtcaattaactgacatggaatttatttaactg taaatgttccctaatgcaaagttcagttcctaatagcacctg
quality values	Open. Hide. 58 33 37 35 58 58 42 38 58 58 54 54 62 62 62 62 62 62 62 36 56 47 62 49 47 41 47 54 62 62 47 47 56 43 62 56 62 62 62 62 62 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 59 62 59 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 54 54 62 62 59 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 49 49 42 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 51 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 47 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 47 47 62 54 62 62 62 62 62 62 62 62 62 62 62 45 58 58 54 58 58 54 58 49 58 54 58 58 54 58 58 58 58 58 58 49 58 54 58 58 54 58 54 58 54 54 39 58 54 52 58 54 52 58 58 58 46 58 47 43 43 54 47 58 58 58 54 52 58 52 58 54 54 58 58 58 54 58 52 54 52 54 54 58 58 54 54 58 54 35 58 54 41 54 51 50 54 58 58 42 50 51 40 58 58 50 54 58 37 47 50 50 58 58 50 51 58 58 51 42 16 58 54 46 25 52 51 30 51 50 47 49 54 40 53 52 46 50 31 49 36 26 54 51 26 42 54 32 50 58 58 37 54 46 49 51 30 23 38 47 53 50 39 40 43 41 41 52 42 27 41 53 27 33 52 31 51 39 50 34 39 58 58 29 51 51 35 58 49 37 18 32 53 28 50 40 50 51 44 21 40 39 53 45 53 53 47 49 54 52 26 49 32 26 39 53 42 49 32 33 31 45 42 35 45 53 39 31 37 40 52 37 39 49 27 26 51 28 54 26 40 53 44 41 20 33 33 33 49 31 32 9 46 30 33 30 25 52 37 35 35 22 15 17 20 30 28 16 29 31 35 39 25 31 16 34 28 16 47 23 40 32 26 51 52 53 16 51 18 33 32 26 31 37 29 17 22 31 36 35 28 8 30 35 31 46 25 31 32 24 34 31 45 35 28 11 14 31 17 30 29 15 9 15 26 31 31 31 25 29 18 31 18 24 29 20 27 37 31 31 31 42 29 25 26 31 30 28 8 7 7 7 7 13 30 23 26 25 30 20 18 21 11 19 15 11 9 24 14 18 30 28 41 31 22 29 23 14 27 21 14 26 41 44 39 8 15 31 18 22 31 21 38 30 21 30 25 32 15 23 31 8 22 15 8 15 28 18 26 23 11 14 33 29 7 18 31 31 25 19 30 7 19 34 22 21 36 33 22 12 16 21 25 13 4 4 12 21 20 14 21 6 13 6 6 4 4 4 10 17 10 14 10 6 5 19 18 7 15 20 28 11 16 3 11 22 19 27 28 23 5 8 9 5 27 11 11 3 5 10 9 19 27 8 3 4 6 19 20 11 11 6 10 21 7 20 25 10 19 27 6 3 4 11 8 20 21 14 13 9 5 14 28 14 7 11 14 14 9 23 8 10 4 6 16 11 5 16 12 2 13 11 21 17 3 5 21 24 7 6 19 23 8 4 6 18 20 11 16 24 7 9 4 15 10 6 8 5 9 5 5 14 6	Open. Hide. 62 47 51 39 62 62 62 62 62 62 62 59 56 38 38 59 59 62 59 62 62 62 59 44 62 62 59 62 62 62 62 62 59 62 62 62 59 62 62 59 62 62 62 62 62 62 54 62 62 62 54 62 59 59 62 59 56 62 62 62 59 59 59 62 62 62 62 62 59 62 54 62 62 62 62 62 59 62 62 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 42 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 59 62 62 62 62 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 46 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 54 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 44 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 54 58 58 58 58 52 58 58 58 58 58 54 58 47 41 58 39 58 54 58 58 54 58 54 58 54 54 45 58 58 54 54 58 58 58 58 58 58 41 58 58 58 58 58 51 58 47 42 58 54 51 58 58 53 53 58 58 58 58 58 58 58 50 51 40 51 46 31 58 58 45 34 58 58 58 54 54 53 41 39 51 58 47 50 46 51 51 40 58 58 58 51 58 54 51 50 52 49 54 58 58 49 52 46 53 58 58 51 51 53 47 58 50 53 41 41 39 53 53 52 58 54 52 54 44 39 52 46 36 51 58 50 50 51 52 50 49 50 51 40 50 50 51 50 49 37 41 51 49 54 39 54 49 49 33 47 49 29 47 53 42 47 54 54 46 38 52 42 49 39 54 54 54 53 49 52 49 44 37 52 54 51 49 39 33 52 40 44 47 52 42 53 42 45 37 51 40 54 46 52 45 34 40 33 45 37 53 53 53 41 39 54 54 49 18 33 47 35 42 52 54 45 33 35 45 40 40 52 52 51 45 41 31 16 31 32 53 51 36 32 36 45 43 53 40 51 49 21 13 49 15 33 31 15 33 32 32 33 45 43 30 46 32 30 28 42 32 36 45 31 31 32 31 51 30 31 16 45 37 51 33 18 26 51 31 30 26 41 31 31 39 35 36 31 37 31 35 26 35 23 31 34 33 32 43 31 31 48 48 48 31 31 29 30 48 43 28 30 29 42 37 31 31 30 30 33 34 18 32 24 32 24 35 41 31 31 46 44 30 30 32 27 31 31 25 31 21 11 39 19 31 31 37 48 30 27 31 32 26 23 32 30 31 48 28 24 20 31 15 38 31 31 31 33 44 44 27 33 14 9 35 27 32 32 19 13 24 28 27 44 44 25 18 14 31 32 20 31 14 16 31 28 23 48 26 21 31 17 20 14 26 21 24 15 9 17 21 25 17 21 9 7 7 25 7 12 14 21 14 28 8 19 13 30 39 43 26 32 34 27 27 21 27 29 23 30 21 11 6 13 5 3 6 19 11 38 32 34 31 12 11 12 15 16 24 7 27 13 6 3 14 24 28 28 25 15 40 47 40 40 11 8 6 13 28 24 34 34 24 21 26 16 13 3 26 6 8 11 25 6 15 26 19 10 23 13 7 28 28 12 14 8 21 16 17 28 20 15 11 17 28 12 3 5 7 17 17 24 9 18 19 4 6 4 19 3 12 6 18 13 28 12 7 4 8 8 10 7 18 28 17 3 3 3 8 9 17 8 11 17 13 8 20 13 14 3 9 6 25 6 8 19 17 9 7 16 7 5 14 17 9 6 9 3 1 3 1 1 6 13 17 6 6 17 17 14 8 5 9 3 3 5 1 1 3 2 1 4 1 5 1 3 6 11 8 17 8 9 5 22 2 1 3 8 12 1 15 24 5 18 5 17 6 15 11 6 5 7 6 13 4 2 3 7 5 4 4

Alignment Information

BAC End 1

BAC End 2

seq1: chr9_52613800_52614956
seq2: B6Ng01-244J06.g_69_1210 (reverse)

seq1  CAGGTGCTATTAGGAACTAAAATTTTCAAATAAGAGAAAAAATGTAACTA  50
      |||||||||||||||||| || ||| |  || || ||| |    | ||  
seq2  CAGGTGCTATTAGGAACTGAACTTTGC--ATTAGGGAACA---TTTACAG  45

seq1  TTTAAAAATAAAATCCATATTAAGTAA-TGACTTTATCTACCTAGCTATT  99
      ||   ||||||| ||||| | |  ||| ||||||  |||||   ||||||
seq2  TT---AAATAAATTCCATGTCAGTTAATTGACTTATTCTACTAGGCTATT  92

seq1  ATTTGGAAATATCAATTTGAATGGTGTGCATTTTCTCCTTTTACAAATCC  149
      | |  |||||||  |||||||| ||||||| ||||||  |||||||||||
seq2  AAT--GAAATATTCATTTGAAT-GTGTGCA-TTTCTC--TTTACAAATCC  136

seq1  ATAGCTGCTAGATTTATTTCCTGGAAAAGTAT-AAAAATGATGACCAAAC  198
      |||||||||||| |||||| |||||||||||| ||||||||||||  |||
seq2  ATAGCTGCTAGA-TTATTT-CTGGAAAAGTATAAAAAATGATGAC--AAC  182

seq1  TAGCAAAAAATAACCTTGTCACATATAATTTTACCTTGGTATTATGAGAG  248
      ||||||||||  | ||||||||||||||||||||||||||||  ||||||
seq2  TAGCAAAAAAATAACTTGTCACATATAATTTTACCTTGGTATATTGAGAG  232

seq1  ACTGAGTCTCAAATCCACACCAGAAAACATATAGTCTGAAAATATTCTCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTCTCAAATCCACACCAGAAAACATATAGTCTGAAAATATTCTCC  282

seq1  TTTACACTGTAAAGCACCTGTGAGCAATTTAGAATATCTAATGCAATGTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACTGTAAAGCACCTGTGAGCAATTTAGAATATCTAATGCAATGTA  332

seq1  AATGTTTTTGATGGTTGTTATAATGTAATGTTTAGGGAATAAATTGTTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTTGATGGTTGTTATAATGTAATGTTTAGGGAATAAATTGTTCA  382

seq1  ATACAGATGCAACC-TTAAAAGGATGTTTTCCATCAAATGATTGGGTTGG  447
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATACAGATGCAACCTTTAAAAGGATGTTTTCCATCAAATGATTGGGTTGG  432

seq1  ACCCCAGAGATACTGAAGGCACTGTATAAGTGAAGGTGATAGAAATGTGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGAGATACTGAAGGCACTGTATAAGTGAAGGTGATAGAAATGTGG  482

seq1  AAAGTGACCCTGTTACCATGTCAGAGAAGAAGGCAAGTCGCCACCAGAGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGACCCTGTTACCATGTCAGAGAAGAAGGCAAGTCGCCACCAGAGT  532

seq1  CTACCGACTTGTGTCCAGATGACAGGGGCACTAACTGGAGAGGATCCCTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCGACTTGTGTCCAGATGACAGGGGCACTAACTGGAGAGGATCCCTT  582

seq1  TGGCCCCAAGTGGGATAATTCGCACATGAAAGTAACAATAACTACAATAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCAAGTGGGATAATTCGCACATGAAAGTAACAATAACTACAATAT  632

seq1  CCCAAAGCATGTAATGAAGGATTAAAATATATGAATTAATTATACTTAAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGCATGTAATGAAGGATTAAAATATATGAATTAATTATACTTAAC  682

seq1  AAAAAATTGAGGACTATTACAGAACATAAAACTAAAATAACTCAATAATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTGAGGACTATTACAGAACATAAAACTAAAATAACTCAATAATG  732

seq1  AATTTTTTATATCTTTTATGATCCATAACAGATTAGCCAAGGAGTTGATA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTATATCTTTTATGATCCATAACAGATTAGCCAAGGAGTTGATA  782

seq1  GGCTTTTGTTTTGTTTCTTGTGTGTGGGGAAGAATTCAAGTTAGTAACTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTGTTTTGTTTCTTGTGTGTGGGGAAGAATTCAAGTTAGTAACTA  832

seq1  AAGATGGGATTTGGAATTTTCTGGGTTTGCCATCCCTAGTGAAATAATGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGGATTTGGAATTTTCTGGGTTTGCCATCCCTAGTGAAATAATGG  882

seq1  ATATAAGCAACTTATCAAGCGGATTTGGTTTTTTAAGTTTATTAAGTGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGCAACTTATCAAGCGGATTTGGTTTTTTAAGTTTATTAAGTGAA  932

seq1  TGGGGAGTTTTAAAATGGATTAAATAGACTGGCAATATCTCAATACACTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGTTTTAAAATGGATTAAATAGACTGGCAATATCTCAATACACTG  982

seq1  AAATATTAAAAAAAATCATAGAGACTAGAAATAAAAGCATATGCTTTCAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTAAAAAAAATCATAGAGACTAGAAATAAAAGCATATGCTTTCAC  1032

seq1  TTGTTGTTGCAAGAACACAGATCAACATTCTTTACAAAAGATGGAACCTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGCAAGAACACAGATCAACATTCTTTACAAAAGATGGAACCTG  1082

seq1  AATTGAATCAAACCTCCATTAAAATACTAATTTACATGAAGCACAAAACC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAATCAAACCTCCATTAAAATACTAATTTACATGAAGCACAAAACC  1132

seq1  AAAAGAATTC  1157
      ||||||||||
seq2  AAAAGAATTC  1142

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