BAC Information

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BAC

Clone NameB6Ng01-245C05
Chromosome9 (Build37)
Map Location 50,631,264 - 50,757,019
singlet/doubletdoublet
Overlap geneAlg9, Ppp2r1b, Snf1lk2
Upstream geneEG667975, LOC100042806, LOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik
Downstream geneLayn, 4833427G06Rik, Btg4, LOC100042825, Pou2af1, Gm684, 1810046K07Rik, LOC100042854, LOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245C05.bB6Ng01-245C05.g
ACCGA054100GA054101
length1,174965
definitionB6Ng01-245C05.b B6Ng01-245C05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,755,847 - 50,757,019)(50,631,264 - 50,632,224)
sequence
gaattccaggacagccagggctacacagaaaaaccctgtcttgaaaaaaa
aaagtaaaaaaagtaccaatttggggagtctagaatattaaatgacaatg
agatgatatcattatcaaatatgaattatggcactttgccacactgttca
gttacttttttaaaaagttgctaagagacagttttgaaataatgaaacct
tattgtataaaatcagtaaacacacccagttactcctcttgaattatatg
gagagtttatggtgtttcagacactatctcatcttgtcttcaagccgtca
ttgcttaatgactgctcctctgtaatggtcttgaattgctgattgaggag
tttactatttagccttcttttctcatatgaactgtaaagctgtgtgcatt
tgggtactgaatttccctgtgattccacatcagctatcaagttctgcagg
gctgcttatactgttttcatgcttgcagctgtgcaggagaagttttgaat
tgttttttagtttataaaatgtaatcacagtaggtttcatgtggacttta
gcccctcccgcagtctcccagtgttgtaaaatacagagttcctccttagg
ctcagatgcatcccgtggcgccctccttactcttggtgcgctgctcttgg
ttctccttgggtctcacgtgtctgctgagtgcctctttccacagctagaa
taggaacttcttatattgcccctcctagtcatgttgtccagagtggcctc
cctctgttgctctccagttgatgataccgtatcactgacacctattagac
tctatagttgccatttttattgtgtagttcttgtcttctctgttgaaata
gacatacaatgaagacaaagtgccaagtactttgacgagaattatttaga
tatttgtagaacaatttaataaattgatgttttttactcttcaacttcaa
aaattaacctcatagagattcagctttcattttaatttgatttgtgaatg
tcttagttaaagttgccattgctgtgaacagacaccatgggccatgacac
ttctttataaagggaaacattactggggctgactttacagtttcagagtt
tagtcttgttatcaccatgtagaaggcatgggggaaggtgcccagcatct
tgaatgctggcaggagctcagagt
gaattcaataggtagaccaggctagtcttgaacttgtggctggcctcttg
cctcagtttcccaagtgctagactacaagtgtgctgctacgtcatgcctg
gcagatctagtgaaggtttttaagtaaagagccaggacatggctggctct
tcagaaggatctcagaattagcggtaagaaaaataatgggaagtgtgact
tggcggtgtgagggtgtttggaagtgtgaattggaggtgcgaggatgttt
gtaagcatactatctggaggtgacgaggggacacagccaataaacataaa
ggaggaagtggattgtatggtatattaaggttctgtagagggagagatcc
aactgaatgcatatgtaattatgaaagcgggttgttgagagcacacttga
tagccagagcacttaacagctggtcagccaagaagagagaagctcagaac
atatatgagaccaatgacataacccttgtcccaggctgaacaactagagg
tcccctagagagttgctggtgtgactcttcattgaaagcccgaagctgct
ggggtctgatgtctgcagatgtggcagtaccagccggttgcctgattctc
cctccttggtcctgtgcaggcctgcagcctattgaatgatgatgctcata
ttcagggaaccccccacccacccaccccatcgaatcttttttctattttc
ttttttttaatgtcaaactttggaattaccctacagactgtgtgttacta
atctaagtggtttctcgggcccagtcaagttgacagtcagcattagtcat
tgcatgtagtccactagaaggacagtaaataccgagggaatgttacagat
caggcctctgactggatccagaggtataggcgggtcaacgtaggtcttgt
ctattcccccttcaaaggacttaggaccctccagtttttgatattgtctc
agttcttgctactgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_50755847_50757019
seq2: B6Ng01-245C05.b_48_1221 (reverse)

seq1  ACTCTGAGCTCCTTGCCAGCA-TCATGATTGCT-TGCAC--TCTCCCATG  46
      |||||||||||| |||||||| ||| || ||||  ||||  || ||||||
seq2  ACTCTGAGCTCC-TGCCAGCATTCAAGA-TGCTGGGCACCTTCCCCCATG  48

seq1  CTTTCTACCATGGTGATAAC-AGACTAAAACCTCTGAAACTGT-AAGTCA  94
      | ||||| |||||||||||| ||||||||  |||||||||||| ||||||
seq2  CCTTCTA-CATGGTGATAACAAGACTAAA--CTCTGAAACTGTAAAGTCA  95

seq1  GCCCCAGTTAAATGTTTCCCTTTAT-AAGAGTTGTCATGG-CCATGGTGT  142
      ||||||||  ||||||||||||||| ||||  |||||||| |||||||||
seq2  GCCCCAGT--AATGTTTCCCTTTATAAAGAAGTGTCATGGCCCATGGTGT  143

seq1  CTGTTCACAGCAATGGCAACTTTAACTAAGACATTCACAAATCAAATTAA  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCACAGCAATGGCAACTTTAACTAAGACATTCACAAATCAAATTAA  193

seq1  AATGAAAGCTGAATCTCTATGAGGTTAATTTTTGAAGTTGAAGAGTAAAA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGCTGAATCTCTATGAGGTTAATTTTTGAAGTTGAAGAGTAAAA  243

seq1  AACATCAATTTATTAATTTGTTCTACAAATATCTAAATAATTCTCGTCAA  292
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AACATCAATTTATTAAATTGTTCTACAAATATCTAAATAATTCTCGTCAA  293

seq1  AGTACTTGGCACTTTGTCTTCATTGTATGTCTATTTCAACAGAGAAGACA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTGGCACTTTGTCTTCATTGTATGTCTATTTCAACAGAGAAGACA  343

seq1  AGAACTACACAATAAAAATGGCAACTATAGAGTCTAATAGGTGTCAGTGA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTACACAATAAAAATGGCAACTATAGAGTCTAATAGGTGTCAGTGA  393

seq1  TACGGTATCATCAACTGGAGAGCAACAGAGGGAGGCCACTCTGGACAACA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGTATCATCAACTGGAGAGCAACAGAGGGAGGCCACTCTGGACAACA  443

seq1  TGACTAGGAGGGGCAATATAAGAAGTTCCTATTCTAGCTGTGGAAAGAGG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGGAGGGGCAATATAAGAAGTTCCTATTCTAGCTGTGGAAAGAGG  493

seq1  CACTCAGCAGACACGTGAGACCCAAGGAGAACCAAGAGCAGCGCACCAAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGCAGACACGTGAGACCCAAGGAGAACCAAGAGCAGCGCACCAAG  543

seq1  AGTAAGGAGGGCGCCACGGGATGCATCTGAGCCTAAGGAGGAACTCTGTA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGAGGGCGCCACGGGATGCATCTGAGCCTAAGGAGGAACTCTGTA  593

seq1  TTTTACAACACTGGGAGACTGCGGGAGGGGCTAAAGTCCACATGAAACCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAACACTGGGAGACTGCGGGAGGGGCTAAAGTCCACATGAAACCT  643

seq1  ACTGTGATTACATTTTATAAACTAAAAAACAATTCAAAACTTCTCCTGCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGATTACATTTTATAAACTAAAAAACAATTCAAAACTTCTCCTGCA  693

seq1  CAGCTGCAAGCATGAAAACAGTATAAGCAGCCCTGCAGAACTTGATAGCT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCAAGCATGAAAACAGTATAAGCAGCCCTGCAGAACTTGATAGCT  743

seq1  GATGTGGAATCACAGGGAAATTCAGTACCCAAATGCACACAGCTTTACAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGAATCACAGGGAAATTCAGTACCCAAATGCACACAGCTTTACAG  793

seq1  TTCATATGAGAAAAGAAGGCTAAATAGTAAACTCCTCAATCAGCAATTCA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATGAGAAAAGAAGGCTAAATAGTAAACTCCTCAATCAGCAATTCA  843

seq1  AGACCATTACAGAGGAGCAGTCATTAAGCAATGACGGCTTGAAGACAAGA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATTACAGAGGAGCAGTCATTAAGCAATGACGGCTTGAAGACAAGA  893

seq1  TGAGATAGTGTCTGAAACACCATAAACTCTCCATATAATTCAAGAGGAGT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATAGTGTCTGAAACACCATAAACTCTCCATATAATTCAAGAGGAGT  943

seq1  AACTGGGTGTGTTTACTGATTTTATACAATAAGGTTTCATTATTTCAAAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGTGTGTTTACTGATTTTATACAATAAGGTTTCATTATTTCAAAA  993

seq1  CTGTCTCTTAGCAACTTTTTAAAAAAGTAACTGAACAGTGTGGCAAAGTG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTTAGCAACTTTTTAAAAAAGTAACTGAACAGTGTGGCAAAGTG  1043

seq1  CCATAATTCATATTTGATAATGATATCATCTCATTGTCATTTAATATTCT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATTCATATTTGATAATGATATCATCTCATTGTCATTTAATATTCT  1093

seq1  AGACTCCCCAAATTGGTACTTTTTTTACTTTTTTTTTTCAAGACAGGGTT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCCCAAATTGGTACTTTTTTTACTTTTTTTTTTCAAGACAGGGTT  1143

seq1  TTTCTGTGTAGCCCTGGCTGTCCTGGAATTC  1173
      |||||||||||||||||||||||||||||||
seq2  TTTCTGTGTAGCCCTGGCTGTCCTGGAATTC  1174

seq1: chr9_50631264_50632224
seq2: B6Ng01-245C05.g_68_1032

seq1  GAATTCAATAGGTAGACCAGGCTAGTCTTGAACTTGTGGCTGGCCTCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGGTAGACCAGGCTAGTCTTGAACTTGTGGCTGGCCTCTTG  50

seq1  CCTCAGTTTCCCAAGTGCTAGACTACAAGTGTGCTGCTACGTCATGCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTTTCCCAAGTGCTAGACTACAAGTGTGCTGCTACGTCATGCCTG  100

seq1  GCAGATCTAGTGAAGGTTTTTAAGTAAAGAGCCAGGACATGGCTGGCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCTAGTGAAGGTTTTTAAGTAAAGAGCCAGGACATGGCTGGCTCT  150

seq1  TCAGAAGGATCTCAGAATTAGCGGTAAGAAAAATAATGGGAAGTGTGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGGATCTCAGAATTAGCGGTAAGAAAAATAATGGGAAGTGTGACT  200

seq1  TGGCGGTGTGAGGGTGTTTGGAAGTGTGAATTGGAGGTGCGAGGATGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGTGTGAGGGTGTTTGGAAGTGTGAATTGGAGGTGCGAGGATGTTT  250

seq1  GTAAGCATACTATCTGGAGGTGACGAGGGGACACAGCCAATAAACATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCATACTATCTGGAGGTGACGAGGGGACACAGCCAATAAACATAAA  300

seq1  GGAGGAAGTGGATTGTATGGTATATTAAGGTTCTGTAGAGGGAGAGATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGTGGATTGTATGGTATATTAAGGTTCTGTAGAGGGAGAGATCC  350

seq1  AACTGAATGCATATGTAATTATGAAAGCGGGTTGTTGAGAGCACACTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAATGCATATGTAATTATGAAAGCGGGTTGTTGAGAGCACACTTGA  400

seq1  TAGCCAGAGCACTTAACAGCTGGTCAGCCAAGAAGAGAGAAGCTCAGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGAGCACTTAACAGCTGGTCAGCCAAGAAGAGAGAAGCTCAGAAC  450

seq1  ATATATGAGACCAATGACATAACCCTTGTCCCAGGCTGAACAACTAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGAGACCAATGACATAACCCTTGTCCCAGGCTGAACAACTAGAGG  500

seq1  TCCCCTAGAGAGTTGCTGGTGTGACTCTTCATTGAAAGCCCGAAGCTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTAGAGAGTTGCTGGTGTGACTCTTCATTGAAAGCCCGAAGCTGCT  550

seq1  GGGGTCTGATGTCTGCAGATGTGGCAGTACCAGCCGGTTGCCTGATTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCTGATGTCTGCAGATGTGGCAGTACCAGCCGGTTGCCTGATTCTC  600

seq1  CCTCCTTGGTCCTGTGCAGGCCTGCAGCCTATTGAATGATGATGCTCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTGGTCCTGTGCAGGCCTGCAGCCTATTGAATGATGATGCTCATA  650

seq1  TTCAGGGAACCCCCCACCCACCCACCCCATCGAATCTTTTTTCTATTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGAACCCCCCACCCACCCACCCCATCGAATCTTTTTTCTATTTTC  700

seq1  TTTTTTTTAATGTCAAACTTTGGAATTACCCTACAGACTGTGTGTTACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAATGTCAAACTTTGGAATTACCCTACAGACTGTGTGTTACTA  750

seq1  ATCTAGGTGG-TTCTC-GGCCCAGTCAAGTTGACAGTCAGCATTAGTCAT  798
      ||||| |||| ||||| |||||||||||||||||||||||||||||||||
seq2  ATCTAAGTGGTTTCTCGGGCCCAGTCAAGTTGACAGTCAGCATTAGTCAT  800

seq1  TGCATGTAGTCCACTAGAA-GACAGTAAATACCGAGGGAATGTTACAGAG  847
      ||||||||||||||||||| ||||||||||||||||||||||||||||| 
seq2  TGCATGTAGTCCACTAGAAGGACAGTAAATACCGAGGGAATGTTACAGAT  850

seq1  CAGGCC-CTGACTGGATCCAAGAGTTATAGGC-GGTCAAAGTAGGTCTTG  895
      |||||| |||||||||||| |||| ||||||| |||||| ||||||||||
seq2  CAGGCCTCTGACTGGATCC-AGAGGTATAGGCGGGTCAACGTAGGTCTTG  899

seq1  TCTA-TCCCCCGTCAAAGGACTTAGGACCCTCCAGGTTTTTGATATTGTT  944
      |||| |||||| |||||||||||||||||||||| |||||||||||||| 
seq2  TCTATTCCCCCTTCAAAGGACTTAGGACCCTCCA-GTTTTTGATATTGTC  948

seq1  TCAGTTCTTGCTACTGT  961
      |||||||||||||||||
seq2  TCAGTTCTTGCTACTGT  965