BAC Information

Click to search

BAC

Clone NameB6Ng01-251F19
Chromosome4 (Build37)9 (Build37)
Map Location 64,395,268 - 64,396,15628,181,814 - 28,182,006
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTnfsf15, Tnfsf8, Rpl17-ps, Tnc
Downstream genePappa, Astn2, Trim32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251F19.bB6Ng01-251F19.g
ACCGA058641GA058642
length1,044987
definitionB6Ng01-251F19.b B6Ng01-251F19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(64,395,268 - 64,396,156)(28,181,814 - 28,182,006)
sequence
gaattcaataacaacagaaacaacagaaagtctgcatactcatggaaact
gaacaactctctacttgatgataacttgctcagggaagaaagtaaagtct
tcccagaaatggagccacaacataaccaaacttatgggacacagtgttaa
gtggaaattggatagcattaagtgccttcttcaagaaattttggagatcc
tctactatcaacttactagcacaattgaaaactctagaacaaaaagaagc
aaacacatccaaaaggagtagatggcaggaaataatcaaacacgtggcta
atattaaccaaatagaaattaatttattcagaaattaatttatttaatga
tttttgccatcattgtttgcacacaacattttttttaaaaatttttgatt
agatattttcttcatttacatttcaaatgctatcctgaaagttcccaata
taccccctgccctgtcccctatccacccactcccacttcttggccctggt
gctccactgtactggggaatacaaagtttgcaagtccaacaggcctctct
tcccaatgacggctaactcagccatctactgctacatatgcagctagaga
cacgagctctgggggatactggttagttcatattgttgttccacctgtag
ggttgcagactccttcagctccttaggtatttttctctagcacctaaatt
gggggtcctgtgttctatccaatagatgactgtgagcatccacttctgta
tttgcctgtcactggcatagcctcatacaagacagttataacagggtccc
ttcagcaaaatctttctggcatgtgcaatagagtctgcatttggtggctg
attatgggatggatccccaggtaggttagtttctggatagtccatccttc
cctattagctccaaactttgtctctgtaactcctttcatgtttattttgt
tacctgttctaaggaggaatgaagtatccacccaatggtcttcccttctt
cttgatttttcttgttttgcaatgtatcttgggggttctatgtt

gaattcagatgtccctcaacagaggaatagatacagaaaatgtggtacat
ttacacaatggagtactactcagctattaaaaaagaatgaatttatgaaa
ttcctgggcaaatggatggacctggagggtatcatcctgagtgagataac
ccaatcacaaaagaactcacatgatatgtactcactgataagtggatatc
agaactacagaaacttagaatacccaagatacaatttgcaaaacacatga
aactcaagaagaatgataagtatggacacttcgccccttcttagaattgg
gaacaaaacacccatggaaggagtcaaggtttctttcttgaagcaaataa
aatgagcatggacacaaacattttgattattgttgttttgagtttggtta
taaaattctactttattttttgtcttaataggattttttcctttttaaaa
tttatttatttttacttattcactttacatcaggttcactgcactcctcc
cagtcacctcttcccaaattttcccccatacccctctctttctcctctga
gcaagggcaggagtccctggggatccccccacctagctccttcaagcctc
tgtcaggttaggtgctttcctctcccacaaaggccaaacaaggcagccct
gctagaagaatatatcctaagtacaggcaacaggttttgagatagcttct
ggtactattgttcaggacccatgtgaggaccaagttgcacatctgctaca
tatacacgactacaggttacatctcttgtatgtgaaaaacatggcatgtg
ttccaagtcaggagtcagccagaaagctggcagccccctaagcttcaggt
gtgtgccccaagtctctacctgctttaacttaccaaacttcctgacatgg
tttcatatcccacagatagagaaagtaaccctaccctcaaacttataaca
cgaaaatgcaatagaataagagaacccagatgtccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_64395268_64396156
seq2: B6Ng01-251F19.b_48_936

seq1  GAATTCAATAACAACAGAAACAACAGAAAGTCTGCATACTCATGGAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAACAACAGAAACAACAGAAAGTCTGCATACTCATGGAAACT  50

seq1  GAACAACTCTCTACTTGATGATAACTTGCTCAGGGAAGAAAGTAAAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACTCTCTACTTGATGATAACTTGCTCAGGGAAGAAAGTAAAGTCT  100

seq1  TCCCAGAAATGGAGCCACAACATAACCAAACTTATGGGACACAGTGTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAAATGGAGCCACAACATAACCAAACTTATGGGACACAGTGTTAA  150

seq1  GTGGAAATTGGATAGCATTAAGTGCCTTCTTCAAGAAATTTTGGAGATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAATTGGATAGCATTAAGTGCCTTCTTCAAGAAATTTTGGAGATCC  200

seq1  TCTACTATCAACTTACTAGCACAATTGAAAACTCTAGAACAAAAAGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTATCAACTTACTAGCACAATTGAAAACTCTAGAACAAAAAGAAGC  250

seq1  AAACACATCCAAAAGGAGTAGATGGCAGGAAATAATCAAACACGTGGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATCCAAAAGGAGTAGATGGCAGGAAATAATCAAACACGTGGCTA  300

seq1  ATATTAACCAAATAGAAATTAATTTATTCAGAAATTAATTTATTTAATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAACCAAATAGAAATTAATTTATTCAGAAATTAATTTATTTAATGA  350

seq1  TTTTTGCCATCATTGTTTGCACACAACATTTTTTTTAAAAATTTTTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCCATCATTGTTTGCACACAACATTTTTTTTAAAAATTTTTGATT  400

seq1  AGATATTTTCTTCATTTACATTTCAAATGCTATCCTGAAAGTTCCCAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTTCTTCATTTACATTTCAAATGCTATCCTGAAAGTTCCCAATA  450

seq1  TACCCCCTGCCCTGTCCCCTATCCACCCACTCCCACTTCTTGGCCCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCCTGCCCTGTCCCCTATCCACCCACTCCCACTTCTTGGCCCTGGT  500

seq1  GCTCCACTGTACTGGGGAATACAAAGTTTGCAAGTCCAACAGGCCTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCACTGTACTGGGGAATACAAAGTTTGCAAGTCCAACAGGCCTCTCT  550

seq1  TCCCAATGACGGCTAACTCAGCCATCTACTGCTACATATGCAGCTAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATGACGGCTAACTCAGCCATCTACTGCTACATATGCAGCTAGAGA  600

seq1  CACGAGCTCTGGGGGATACTGGTTAGTTCATATTGTTGTTCCACCTGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGCTCTGGGGGATACTGGTTAGTTCATATTGTTGTTCCACCTGTAG  650

seq1  GGTTGCAGACTCCTTCAGCTCCTTAGGTATTTTTCTCTAGCACCTAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCAGACTCCTTCAGCTCCTTAGGTATTTTTCTCTAGCACCTAAATT  700

seq1  GGGGGTCCTGTGTTCTATCCAATAGATGACTGTGAGCATCCACTTCTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTCCTGTGTTCTATCCAATAGATGACTGTGAGCATCCACTTCTGTA  750

seq1  TTTGCCTGTCACTGGCATAGCCTCATACAAGACAGTTATAACAGGGTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTGTCACTGGCATAGCCTCATACAAGACAGTTATAACAGGGTCCC  800

seq1  TTCAGCAAAATCTTTCTGGCATGTGCAATAGAGTCTGCATTTGGTGGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAAAATCTTTCTGGCATGTGCAATAGAGTCTGCATTTGGTGGCTG  850

seq1  ATTATGGGATGGATCCCCAGGTAGGTTAGTTTCTGGATA  889
      |||||||||||||||||||||||||||||||||||||||
seq2  ATTATGGGATGGATCCCCAGGTAGGTTAGTTTCTGGATA  889


seq1: chr9_28181814_28182006
seq2: B6Ng01-251F19.g_70_263 (reverse)

seq1  ATATCCACTTATCAGTGAGTACATATTGTGTGAGTTCTTTTGTGATTGGG  50
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  ATATCCACTTATCAGTGAGTACATATCATGTGAGTTCTTTTGTGATTGGG  50

seq1  TTACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTGCCTAGGAAT  100
      ||| ||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  TTATCTCACTCAGGATGATACCCTCCAGGTCCATCCATTTGCCCAGGAAT  100

seq1  TTCATAAATTCATTC-TTTTTAATAGCTGAGTAGTACTCCATTGTGTAGA  149
      ||||||||||||||| |||||||||||||||||||||||||||||||| |
seq2  TTCATAAATTCATTCTTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAA  150

seq1  TGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGGCATCTG  193
      |||||||||||||||||||| |||||||||||||||| ||||||
seq2  TGTACCACATTTTCTGTATCTATTCCTCTGTTGAGGGACATCTG  194


| Home | SequenceCutter | Blast | Download |