BAC Information

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BAC

Clone NameB6Ng01-252H03
Chromosome9 (Build37)
Map Location 24,509,500 - 24,606,860
singlet/doubletdoublet
Overlap geneTbx20
Upstream geneLOC100040866, LOC100040878, LOC100040893, Npsr1, Dpy19l1, Cypt4
Downstream geneLOC666251, LOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252H03.bB6Ng01-252H03.g
ACCGA059439GA059440
length982660
definitionB6Ng01-252H03.b B6Ng01-252H03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,509,500 - 24,510,311)(24,606,202 - 24,606,860)
sequence
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcatatcaaaacaaccctgagat
tccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacaaaaattccattttgcattagctaacaactcct
gtacatggggcctgccctggaatgcagtgttcttaaccggtatcaatcat
agataatttcatggtattccaccaaactggaaaacctacaagaaatcgat
gaatgttttagcaaatataatctatggaagttaaatcaagatgaaataaa
caatttaaactaactcatagctcacagtaaaatagaagcaataattaaaa
ttctcccaagcaggggcagaagaggtcacccagtggtttagagcactggc
tgttcctccagaaggtcagggtttgattcccaccacccacatggcagctc
aaagctgttctaattccaggtccaggaaccaatgccctctgctggcctcc
gtgggcaccaggcacaaacatggaatgcagacatacatgaagataagcat
ctgtacacatacattctaacttaatggagacaaacaaacataaaaaactc
ccaaacaaaaaagcctagactttaaacagagaactaatgccaatagtcct
cgtgtaattccttaaaatagagagataacatttcctaatcctccttatga
tttcacaattatcctgaaaccaaagccacataaaggaaaaaaggtaatta
gacatcaatatcctttatgaacataaatgtaaaaattcccgattaaaata
cttataaattgaattcaagaacacatcaaaatattttctactatgaggcc
agaaaaatggatcaaaacattgactactcttc

gaattcatatagagcttccagtcctttcagctttttagatgcggaaacag
acaacaacatacctgaaaatgattgtctagagacacacattaagcaactg
gcaaagaagaatctggaatcagaattccttagcgtgcactgttggctcag
aacagagatgatggcaccccactagtgaggatttagaagtgtgtgggagc
ttctatgattgcaatacaatgtctgtggggtgccgctgctctactgacca
gaaaaattaaacgtgtcatgtgttcagggaagtccccgcagggagagtta
tcttcccagtgatgccaatgcagttcccatgaacaaacatgggtaaccct
cctccactttaccactttgatttacggccattttatcttgcagcattcat
gagtacttaaattgctggtatctcagtacccaaaatccatgtcactcctt
ctacaatacctgagtgaatttccttcctttaagttccagacaaagtatgt
gtacgcgcgcgcacgcgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagtgtgagagctaca
gcagatcttgaaaccatgcccaaactttaaacaaccatgggtaattttat
gtatttatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_24509500_24510311
seq2: B6Ng01-252H03.b_46_857

seq1  GAATTCTCACCTGAGGAATACCGAATGGCTGAGAAGCACCTGAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACCGAATGGCTGAGAAGCACCTGAAAAAATG  50

seq1  TTCAACATCCTTAATCATCAGGGAAATGCATATCAAAACAACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCCTTAATCATCAGGGAAATGCATATCAAAACAACCCTGAGAT  100

seq1  TCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGC  150

seq1  AGATGCTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTG  200

seq1  GGATTGCAAGCTTGTACAAAAATTCCATTTTGCATTAGCTAACAACTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCAAGCTTGTACAAAAATTCCATTTTGCATTAGCTAACAACTCCT  250

seq1  GTACATGGGGCCTGCCCTGGAATGCAGTGTTCTTAACCGGTATCAATCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGGGGCCTGCCCTGGAATGCAGTGTTCTTAACCGGTATCAATCAT  300

seq1  AGATAATTTCATGGTATTCCACCAAACTGGAAAACCTACAAGAAATCGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTTCATGGTATTCCACCAAACTGGAAAACCTACAAGAAATCGAT  350

seq1  GAATGTTTTAGCAAATATAATCTATGGAAGTTAAATCAAGATGAAATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTTTAGCAAATATAATCTATGGAAGTTAAATCAAGATGAAATAAA  400

seq1  CAATTTAAACTAACTCATAGCTCACAGTAAAATAGAAGCAATAATTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAAACTAACTCATAGCTCACAGTAAAATAGAAGCAATAATTAAAA  450

seq1  TTCTCCCAAGCAGGGGCAGAAGAGGTCACCCAGTGGTTTAGAGCACTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCAAGCAGGGGCAGAAGAGGTCACCCAGTGGTTTAGAGCACTGGC  500

seq1  TGTTCCTCCAGAAGGTCAGGGTTTGATTCCCACCACCCACATGGCAGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTCCAGAAGGTCAGGGTTTGATTCCCACCACCCACATGGCAGCTC  550

seq1  AAAGCTGTTCTAATTCCAGGTCCAGGAACCAATGCCCTCTGCTGGCCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGTTCTAATTCCAGGTCCAGGAACCAATGCCCTCTGCTGGCCTCC  600

seq1  GTGGGCACCAGGCACAAACATGGAATGCAGACATACATGAAGATAAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCACCAGGCACAAACATGGAATGCAGACATACATGAAGATAAGCAT  650

seq1  CTGTACACATACATTCTAACTTAATGGAGACAAACAAACATAAAAAACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACACATACATTCTAACTTAATGGAGACAAACAAACATAAAAAACTC  700

seq1  CCAAACAAAAAAGCCTAGACTTTAAACAGAGAACTAATGCCAATAGTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAAAAAAGCCTAGACTTTAAACAGAGAACTAATGCCAATAGTCCT  750

seq1  CGTGTAATTCCTTAAAATAGAGAGATAACATTTCCTAATCCTCCTTATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTAATTCCTTAAAATAGAGAGATAACATTTCCTAATCCTCCTTATGA  800

seq1  TTTCACAATTAT  812
      ||||||||||||
seq2  TTTCACAATTAT  812


seq1: chr9_24606202_24606860
seq2: B6Ng01-252H03.g_67_726 (reverse)

seq1  ATATAAATACATAAAATTA-CCATGGTTGTTTAAAGTTTGGGCATGGTTT  49
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATATAAATACATAAAATTACCCATGGTTGTTTAAAGTTTGGGCATGGTTT  50

seq1  CAAGATCTGCTGTAGCTCTGAGAATATTACACACACACACACACACACAC  99
      ||||||||||||||||||| | | | | ||||||||||||||||||||||
seq2  CAAGATCTGCTGTAGCTCTCACACTCTCACACACACACACACACACACAC  100

seq1  ACACACACACACACGCACGCACGCACGCACGCACGCACGCACGCGCGTGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACGCACGCACGCACGCACGCACGCACGCACGCGCGTGC  150

seq1  GCGCGCGTACACATACTTTGTCTGGAACTTAAAGGAAGGAAATTCACTCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGCGTACACATACTTTGTCTGGAACTTAAAGGAAGGAAATTCACTCA  200

seq1  GGTATTGTAGAAGGAGTGACATGGATTTTGGGTACTGAGATACCAGCAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTGTAGAAGGAGTGACATGGATTTTGGGTACTGAGATACCAGCAAT  250

seq1  TTAAGTACTCATGAATGCTGCAAGATAAAATGGCCGTAAATCAAAGTGGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTACTCATGAATGCTGCAAGATAAAATGGCCGTAAATCAAAGTGGT  300

seq1  AAAGTGGAGGAGGGTTACCCATGTTTGTTCATGGGAACTGCATTGGCATC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGAGGAGGGTTACCCATGTTTGTTCATGGGAACTGCATTGGCATC  350

seq1  ACTGGGAAGATAACTCTCCCTGCGGGGACTTCCCTGAACACATGACACGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAAGATAACTCTCCCTGCGGGGACTTCCCTGAACACATGACACGT  400

seq1  TTAATTTTTCTGGTCAGTAGAGCAGCGGCACCCCACAGACATTGTATTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTCTGGTCAGTAGAGCAGCGGCACCCCACAGACATTGTATTGC  450

seq1  AATCATAGAAGCTCCCACACACTTCTAAATCCTCACTAGTGGGGTGCCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAGAAGCTCCCACACACTTCTAAATCCTCACTAGTGGGGTGCCAT  500

seq1  CATCTCTGTTCTGAGCCAACAGTGCACGCTAAGGAATTCTGATTCCAGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTGTTCTGAGCCAACAGTGCACGCTAAGGAATTCTGATTCCAGAT  550

seq1  TCTTCTTTGCCAGTTGCTTAATGTGTGTCTCTAGACAATCATTTTCAGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTGCCAGTTGCTTAATGTGTGTCTCTAGACAATCATTTTCAGGT  600

seq1  ATGTTGTTGTCTGTTTCCGCATCTAAAAAGCTGAAAGGACTGGAAGCTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTTGTCTGTTTCCGCATCTAAAAAGCTGAAAGGACTGGAAGCTCT  650

seq1  ATATGAATTC  659
      ||||||||||
seq2  ATATGAATTC  660


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