BAC Information

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BAC

Clone NameB6Ng01-253J01
Chromosome9 (Build37)1 (Build37)
Map Location 84,726,653 - 84,727,656110,661,851 - 110,661,988
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTtk, EG546150, Bckdhb, EG666669
Downstream geneLOC666672, BC023892, Ibtk, 4933431K14Rik, EG434426, 9330154J02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253J01.bB6Ng01-253J01.g
ACCGA060262GA060263
length1,002460
definitionB6Ng01-253J01.b B6Ng01-253J01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(84,726,653 - 84,727,656)(110,661,851 - 110,661,988)
sequence
gaattcctattcttagggtctatagaaagaaagagaaatctgaaaatagg
actaagaaatgaggacaagattatatgaagagtggatataggacaatcag
agaaaaaaaaaacgttgcttcaagcaagatgtctccctatggaggacaat
attaaattatttatatactaaatactgttatactgaccaatattttaagg
ctacatttttacagcttctaagattcatattattcatatgtatgtgtatg
tgcctgaatgaatttatgcacattatatatacgcagtttcttcagaagca
agaagaggatacaagatctaaaatggaagatttaggcagttgtgagtcac
ctgagatgagggtgctgttaacagaatctggttcttctgcaagaatgcta
aatgctcttaacttctgagccatctctctagccatttgattacactttaa
tttatgatatttaccatgcagctatattttatgtttttatatagaaaagc
agttgttaattaatacatatcatctaacattattatcattttgtgatgag
aaaacttgtaatctattgtgtcagcaatctgtaggtcacacatcattgct
actaatttcagtcaccatacgatacattgaatctcctgatttgattgttt
acataactgaaattttgaaaactttgattaaccttttttcacatgcccca
ggcctccaaccactgataactcccattctatattcttgtgtgagcctgtt
attaaacactttcccatttaaattaaattacaacatttgcctatctatgc
atagtttaccttactcaagatttcctccaaacttatccatggtacatcaa
aagacagaattttttcttatttttaaggatgaataatacatcgcattgtt
tctataaaataaataaatttctgtttcatccaatcatctgacaatggaac
ttgtattggttttatattttgatatcttaacaatgttactgtaaatggga
ag

gaattctttgccttagagaagatgtggctttgttagaagaattatgtcat
tgtggaggtgggctttgaggtcatatatgctccatgtacacccaatgtgg
tattcagtctccttctgctaccggcagttcaaattgaagaactctcagtt
ccttctccagcaccacatctgtctggacactgccatgctttccaccacga
tgatattgaactaagtctctgaaactgtaagccagatccaattaaatgtt
tttctttgtaagagttgccttttttcatggtgtccttcacagcatgaaaa
tcctaagtatgtatgcatatatatatatatatatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatatgtctgaga
gagacacagagaaacacacacacacacacacacacatatatatatgtgtg
tgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_84726653_84727656
seq2: B6Ng01-253J01.b_44_1044

seq1  GAATTCCTATTCTTAGGGTCTATAGAAAGAAAGAGAAATCTGAAAATAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATTCTTAGGGTCTATAGAAAGAAAGAGAAATCTGAAAATAGG  50

seq1  ACTAAGAAATGAGGACAAGATTATATGAAGAGTGGATATAGGACAATCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAAATGAGGACAAGATTATATGAAGAGTGGATATAGGACAATCAG  100

seq1  AGAAAAAAAAAACGTTGCTTCAAGCAAGATGTCTCCCTATGGAGGACAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAAAACGTTGCTTCAAGCAAGATGTCTCCCTATGGAGGACAAT  150

seq1  ATTAAATTATTTATATACTAAATACTGTTATACTGACCAATATTTTAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTATTTATATACTAAATACTGTTATACTGACCAATATTTTAAGG  200

seq1  CTACATTTTTACAGCTTCTAAGATTCATATTATTCATATGTATGTGTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTTTACAGCTTCTAAGATTCATATTATTCATATGTATGTGTATG  250

seq1  TGCCTGAATGAATTTATGCACATTATATATACGCAGTTTCTTCAGAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGAATGAATTTATGCACATTATATATACGCAGTTTCTTCAGAAGCA  300

seq1  AGAAGAGGATACAAGATCTAAAATGGAAGATTTAGGCAGTTGTGAGTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGATACAAGATCTAAAATGGAAGATTTAGGCAGTTGTGAGTCAC  350

seq1  CTGAGATGAGGGTGCTGTTAACAGAATCTGGTTCTTCTGCAAGAATGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATGAGGGTGCTGTTAACAGAATCTGGTTCTTCTGCAAGAATGCTA  400

seq1  AATGCTCTTAACTTCTGAGCCATCTCTCTAGCCATTTGATTACACTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCTTAACTTCTGAGCCATCTCTCTAGCCATTTGATTACACTTTAA  450

seq1  TTTATGATATTTACCATGCAGCTATATTTTATGTTTTTATATAGAAAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGATATTTACCATGCAGCTATATTTTATGTTTTTATATAGAAAAGC  500

seq1  AGTTGTTAATTAATACATATCATCTAACATTATTATCATTTTGTGATGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTAATTAATACATATCATCTAACATTATTATCATTTTGTGATGAG  550

seq1  AAAACTTGTAATCTATTGTGTCAGCAATCTGTAGGTCACACATCATTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTGTAATCTATTGTGTCAGCAATCTGTAGGTCACACATCATTGCT  600

seq1  ACTAATTTCAGTCACCATACGATACATTGAATCTCCTGATTTGATTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTTCAGTCACCATACGATACATTGAATCTCCTGATTTGATTGTTT  650

seq1  ACATAACTGAAATTTTGAAAACTTTGATTAACCTTTTTTCACATGCCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACTGAAATTTTGAAAACTTTGATTAACCTTTTTTCACATGCCCCA  700

seq1  GGCCTCCAACCACTGATAACTCCCATTCTATATTCTTGTGTGAGCCTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCAACCACTGATAACTCCCATTCTATATTCTTGTGTGAGCCTGTT  750

seq1  ATTAAACACTTTCCCATTTAAATTAAATTACAACATTTGCCTATCTATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACACTTTCCCATTTAAATTAAATTACAACATTTGCCTATCTATGC  800

seq1  ATAGTTTACCTTACTCAAGATTTCCTCCAAACTTATCCATGGTACATCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTACCTTACTCAAGATTTCCTCCAAACTTATCCATGGTACATCAA  850

seq1  AAGACAGAATTTTTTCTTATTTTTAAGGATGAATAATACATCGCATTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGAATTTTTTCTTATTTTTAAGGATGAATAATACATCGCATTGTT  900

seq1  TCTATAAAATAAATAAATTTCTGTTTCATCCAATCATCTGACAATGGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCTATAAAATAAATAAATTTCTGTTTCATCCAATCATCTGACAAT-GGAA  949

seq1  CTTGTATTGGTTTTATATTTTGATATTCTTAACAATGTTACTGTTAAATG  1000
      ||||||||||||||||||||||||| ||||||||||||||||| ||||||
seq2  CTTGTATTGGTTTTATATTTTGATA-TCTTAACAATGTTACTG-TAAATG  997

seq1  GGAA  1004
      ||||
seq2  GGAA  1001


seq1: chr1_110661851_110661988
seq2: B6Ng01-253J01.g_382_525 (reverse)

seq1  CACACACATACACAC----ATATATGTGTGTGTGTGTGTGTGTGTGAT--  44
      |||||||| ||||||    ||||||||||||||||||||||||||| |  
seq2  CACACACACACACACATATATATATGTGTGTGTGTGTGTGTGTGTGTTTC  50

seq1  --------------ATATATATATATATATATATATATATCACATATATG  80
                    | | ||||||||||||||||||||||   |||||| 
seq2  TCTGTGTCTCTCTCAGACATATATATATATATATATATAT---ATATATA  97

seq1  TGTGTGTGTGTGTGTGATATATATATATATATATATATATATATATATAT  130
      | | |           ||||||||||||||||||||||||||||||||||
seq2  TATAT-----------ATATATATATATATATATATATATATATATATAT  136

seq1  ATATATAT  138
      ||||||||
seq2  ATATATAT  144


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