BAC Information

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BAC

Clone NameB6Ng01-258B16
Chromosome9 (Build37)
Map Location 108,282,355 - 108,422,905
singlet/doubletdoublet
Overlap geneUsp4, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1
Upstream geneCacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, LOC623859
Downstream geneImpdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258B16.bB6Ng01-258B16.g
ACCGA063629GA063630
length1,147539
definitionB6Ng01-258B16.b B6Ng01-258B16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,421,767 - 108,422,905)(108,282,355 - 108,282,899)
sequence
gaattcaaaacaaaagctatgttagagatacaaaggaggttaactataaa
gacaagactaccaaggtgaagagatggtttatcagtagttaagcacactg
gctgctcttccagaggccctgagtttgattcccgaacccaaataagagct
cacaaccggctctaactccggtcccaaggaatccaacaccctaatctctt
ctggttctaaggacaacgcacaaaatggtgcatagacatatatgcaggta
gaacacccatacacatgagagagagaatatgaatgagattgagattattc
aaatcagaagaacagtttgtctccaacaactgaaacactaggagggatgg
ggatggtgggactctatctcttagaggcagttacactaatccgatctgta
aacaggagtatttcacagctttgagggagggagttgtaagtgtgcttgtc
tagcgtatacaaactccagggtttcagatccaacccacagagaatgggcc
tggtgacagcacacctataatcccaacacctgcgagctagacgcaagagg
atcagaagttccaagatcacgttctactgcaacaaaccaatccagaattt
ctaaaacgctgtctcaaagagaaaaagcagcagctttctaacacatctca
tcaacctagaattaagccttagtgagtgcaagaaccatttcttcccccct
ttgaagaaagcaaaaatttactttttcttcatgcaaccacatcagtttaa
agacaaatcacaaccctgagccagagtagtttagtggtaaagtgcatgct
tcccatgtgcaagacacttacgttcaatcctctgcaccaaacaacaaaca
aaccaacctgataaaaacagaaatcacaatacaccgttacagggaaaaca
gtgaagctagagggggactcacacctggaactaaacacaagagtgcaaag
gaaaaagcaggtgtcacataacacctcagcctgaggccaactcagaaaat
attcacagaaaaagcatggccatttaaaaagcacaggaggtaagaactag
gcaccaccagcacaaaccacttactgaaaggcatgcaggcttagagaaaa
acaggccttcgatttgagtttgctattaaaaaggaaacaggccacac
tttgggtttttaagttttttgtgtattactcttgtatccgtgtgtgcatt
gtctatgcatgggtgtgtgtggaggccgagggtgacgttttggaagttag
ttctctccatttgtttttatgcaggttctggggagcaaactcagatcccc
acactcatgcagcacatgcctttctctgttgactttaatgctccctttgt
ctctctaacccgggctgggctagaacccactgtgcaggttacgctcgctt
gcttgctctaacccgggctgggctagagcccactgtgcagattacactcg
cttgactttccttcccagtccttccaagcactgagattgcaagattttaa
atctgactttaagattttcttccttgcaaaactgttcttgggtactgagt
gttccattttagtgcatctctctgggaagctaatgatgaagtcaagggga
gaaccatgtgatgtgaggggctgctgccaaaagactcacttaaattctca
accgtggcggcagcggtagtggtggtagtggtggtggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_108421767_108422905
seq2: B6Ng01-258B16.b_45_1191 (reverse)

seq1  GTGTGG-CTGTT--CTTTTTTATAGCAACTTCAAAATCGA--GGCTGTTT  45
      |||||| |||||  |||||| |||||||  || |||||||  | ||||||
seq2  GTGTGGCCTGTTTCCTTTTTAATAGCAAACTC-AAATCGAAGGCCTGTTT  49

seq1  TTCTCTAAGCCTGCATG-CTTTCAGT-AGTGGTTTGTGCTGGT-GTGCCT  92
      ||||||||||||||||| |||||||| |||||||||||||||| ||||||
seq2  TTCTCTAAGCCTGCATGCCTTTCAGTAAGTGGTTTGTGCTGGTGGTGCCT  99

seq1  AGTTCTTACCT-CTGTGCTTTTTAAATGGCCATGCTTTTTCTGTGAATA-  140
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  AGTTCTTACCTCCTGTGCTTTTTAAATGGCCATGCTTTTTCTGTGAATAT  149

seq1  TTTCTGAGTTGGCCTCAGGCTGAGGTGTTATGTGAACACCTGCTTTTTCC  190
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTCTGAGTTGGCCTCAGGCTGAGGTGTTATGTG-ACACCTGCTTTTTCC  198

seq1  TTTGCACTCTTGTGTTTAGTTCCAGGTGTGAGTCCCCCTCTAGCTTCACT  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACTCTTGTGTTTAGTTCCAGGTGTGAGTCCCCCTCTAGCTTCACT  248

seq1  GTTTTCCCTGTAACGGTGTATTGTGATTTCTGTTTTTATCAGGTTGGTTT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCCTGTAACGGTGTATTGTGATTTCTGTTTTTATCAGGTTGGTTT  298

seq1  GTTTGTTGTTTGGTGCAGAGGATTGAACGTAAGTGTCTTGCACATGGGAA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTGTTTGGTGCAGAGGATTGAACGTAAGTGTCTTGCACATGGGAA  348

seq1  GCATGCACTTTACCACTAAACTACTCTGGCTCAGGGTTGTGATTTGTCTT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCACTTTACCACTAAACTACTCTGGCTCAGGGTTGTGATTTGTCTT  398

seq1  TAAACTGATGTGGTTGCATGAAGAAAAAGTAAATTTTTGCTTTCTTCAAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGATGTGGTTGCATGAAGAAAAAGTAAATTTTTGCTTTCTTCAAA  448

seq1  GGGGGGAAGAAATGGTTCTTGCACTCACTAAGGCTTAATTCTAGGTTGAT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGAAGAAATGGTTCTTGCACTCACTAAGGCTTAATTCTAGGTTGAT  498

seq1  GAGATGTGTTAGAAAGCTGCTGCTTTTTCTCTTTGAGACAGCGTTTTAGA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTGTTAGAAAGCTGCTGCTTTTTCTCTTTGAGACAGCGTTTTAGA  548

seq1  AATTCTGGATTGGTTTGTTGCAGTAGAACGTGATCTTGGAACTTCTGATC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGGATTGGTTTGTTGCAGTAGAACGTGATCTTGGAACTTCTGATC  598

seq1  CTCTTGCGTCTAGCTCGCAGGTGTTGGGATTATAGGTGTGCTGTCACCAG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCGTCTAGCTCGCAGGTGTTGGGATTATAGGTGTGCTGTCACCAG  648

seq1  GCCCATTCTCTGTGGGTTGGATCTGAAACCCTGGAGTTTGTATACGCTAG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATTCTCTGTGGGTTGGATCTGAAACCCTGGAGTTTGTATACGCTAG  698

seq1  ACAAGCACACTTACAACTCCCTCCCTCAAAGCTGTGAAATACTCCTGTTT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCACACTTACAACTCCCTCCCTCAAAGCTGTGAAATACTCCTGTTT  748

seq1  ACAGATCGGATTAGTGTAACTGCCTCTAAGAGATAGAGTCCCACCATCCC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCGGATTAGTGTAACTGCCTCTAAGAGATAGAGTCCCACCATCCC  798

seq1  CATCCCTCCTAGTGTTTCAGTTGTTGGAGACAAACTGTTCTTCTGATTTG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTCCTAGTGTTTCAGTTGTTGGAGACAAACTGTTCTTCTGATTTG  848

seq1  AATAATCTCAATCTCATTCATATTCTCTCTCTCATGTGTATGGGTGTTCT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCTCAATCTCATTCATATTCTCTCTCTCATGTGTATGGGTGTTCT  898

seq1  ACCTGCATATATGTCTATGCACCATTTTGTGCGTTGTCCTTAGAACCAGA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCATATATGTCTATGCACCATTTTGTGCGTTGTCCTTAGAACCAGA  948

seq1  AGAGATTAGGGTGTTGGATTCCTTGGGACCGGAGTTAGAGCCGGTTGTGA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTAGGGTGTTGGATTCCTTGGGACCGGAGTTAGAGCCGGTTGTGA  998

seq1  GCTCTTATTTGGGTTCGGGAATCAAACTCAGGGCCTCTGGAAGAGCAGCC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTATTTGGGTTCGGGAATCAAACTCAGGGCCTCTGGAAGAGCAGCC  1048

seq1  AGTGTGCTTAACTACTGATAAACCATCTCTTCACCTTGGTAGTCTTGTCT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCTTAACTACTGATAAACCATCTCTTCACCTTGGTAGTCTTGTCT  1098

seq1  TTATAGTTAACCTCCTTTGTATCTCTAACATAGCTTTTGTTTTGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTTAACCTCCTTTGTATCTCTAACATAGCTTTTGTTTTGAATTC  1147

seq1: chr9_108282355_108282899
seq2: B6Ng01-258B16.g_65_609

seq1  GAATTCTTTGGGTTTTTAAGTTTTTTGTGTATTACTCTTGTATCCGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGGTTTTTAAGTTTTTTGTGTATTACTCTTGTATCCGTGTG  50

seq1  TGCATTGTCTATGCATGGGTGTGTGTGGAGGCCGAGGGTGACGTTTTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGTCTATGCATGGGTGTGTGTGGAGGCCGAGGGTGACGTTTTGGA  100

seq1  AGTTAGTTCTCTCCATTTGTTTTTATGCAGGTTCTGGGGAGCAAACTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTTCTCTCCATTTGTTTTTATGCAGGTTCTGGGGAGCAAACTCAG  150

seq1  ATCCCCACACTCATGCAGCACATGCCTTTCTCTGTTGACTTTAATGCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCACACTCATGCAGCACATGCCTTTCTCTGTTGACTTTAATGCTCC  200

seq1  CTTTGTCTCTCTAACCCGGGCTGGGCTAGAACCCACTGTGCAGGTTACGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTCTCTAACCCGGGCTGGGCTAGAACCCACTGTGCAGGTTACGC  250

seq1  TCGCTTGCTTGCTCTAACCCGGGCTGGGCTAGAGCCCACTGTGCAGATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTTGCTTGCTCTAACCCGGGCTGGGCTAGAGCCCACTGTGCAGATTA  300

seq1  CACTCGCTTGACTTTCCTTCCCAGTCCTTCCAAGCACTGAGATTGCAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGCTTGACTTTCCTTCCCAGTCCTTCCAAGCACTGAGATTGCAAGA  350

seq1  TTTTAAATCTGACTTTAAGATTTTCTTCCTTGCAAAACTGTTCTTGGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATCTGACTTTAAGATTTTCTTCCTTGCAAAACTGTTCTTGGGTA  400

seq1  CTGAGTGTTCCATTTTAGTGCATCTCTCTGGGAAGCTAATGATGAAGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGTTCCATTTTAGTGCATCTCTCTGGGAAGCTAATGATGAAGTCA  450

seq1  AGGGGAGAACCATGTGATGTGAGGGGCTGCTGCCAAAAGACTCACTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGAACCATGTGATGTGAGGGGCTGCTGCCAAAAGACTCACTTAAA  500

seq1  TTCTCAACCGTGGCGGCAGCGGTAGTGGTGGTAGTGGTGGTGGTG  545
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAACCGTGGCGGCAGCGGTAGTGGTGGTAGTGGTGGTGGTG  545