BAC Information

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BAC

Clone NameB6Ng01-266H02
Chromosome9 (Build37)
Map Location 81,913,425 - 81,914,524
singlet/doubletsinglet
Overlap gene4930486G11Rik
Upstream geneEG666534, LOC100039038, Htr1b, LOC671392
Downstream geneLOC100039085, Irak1bp1, Phip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266H02.bB6Ng01-266H02.g
ACCGA069839GA069840
length1,1021,097
definitionB6Ng01-266H02.b B6Ng01-266H02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctacactaaatccatctggccctgggctttatttggttgggaggt
tttaaattatttcttctatttccttatgagacatgggtcggtttagatag
tttacctgctcttgctttaactttggtatgtggtatctgtcttggaaacc
atccatttcatctagatttactagttttgttaaatgtaggcttttttagt
aggatattatgattttttaaaatttcccctgattttcttgttaagtttcc
cttttcatttctgattttgtttatttggttacttcctctgggccctttag
ttagtttgcctagtagtttatctatcttgttgattctctcaaagaaccag
cttttcatttgttgattccttttgttgttcgctttgtttctatttggttg
attttggccctgagttttaactatttcctgccttctactcctcttttgtg
agtttacttctttttgttctagagttctcatggggggttttaaggtgcta
gtgtaagatctctccagtttctttaccagggcacatttagtgctatgaat
ttttgttttagcactgctttcattgggtatgatgtgccaacattttcatt
aaatttcagaaagtctttaatttatttctttatttcttccctgaccaagt
tatcattgactagagagctattcagtttccatgtatatgtgggctttctg
ttgtttttgcagttcctgaagaccagccttaagccatggagatctgatag
gatgcatgggattatttcaatattcttgtattggttgagggttgttttgg
tcaattttggagatggtaccatgaggtgctgagaagaaggtttattcttt
tgttttagggtaaaatgttctgtagacatctgttacatccctttggttca
taacctctattagtttccctgtgtctttgtttagtttctgtttctgatct
gtccattggtgagagtggtgttgaagtctcccactgttactctgtagggt
tcaatttgtgtttttggagctttcctaagtttaattttatgatggtgggg
tgcccatggcattatggtgctctagaatgttcccaaatatgcgaaattct
ct

gaattctatgtgccaggttttgttggacagaagaaaaagtaagatacaac
taaaattagtcttctcctaagagaaggaattcaacacagcattttaagat
aaaggtcagttgtcaccaggataattaagtggggaagttgcccctgacct
ttagtgagttatccattttatttagtagacagcaaagacagcaaagtaga
tttcagacaaagaaagaagttaacaccctgagccattttctcagggggct
ggcagcttctgaggcaccaaagaagcaatgaaggaaccgccataattcta
ggcagaaccagggcctggcgaagatagcacaggaccacactcgaagccac
gctaagctcagagcagcctaggtggatctatccatctacaagaccaaatg
gctgtggttagatcctgtgtagtcaagcacacactgacttacttacactg
tgcctctttcagaggttgcaccccagcctcaccctctcccccacctcaga
ttttaggcctatgttgagggtatacaaagctctggtcagaagaaagagta
ggtaattatgtaagattttctactgaggtgtgagctgtggtgcaatgctg
gtatagactctggcatcattctttaatgaagagccctggtggaggagact
acagagggcaggcacagtgggtacaaactcattgcacttcttacctatag
cagtatgtttgcctgtctaaaatgtgggatcctggagatttcttctagag
aattttgtttgatctgtgaactaccttaggcgaaaatttctgtattattg
aaacgggtgtttgatattttagtactttaccttgtttctgtgggaaagag
ctcaacatgtatgcaaagttgtatttacatgaaagcattcatcaaaggaa
tatacacaatagaaaacattaaaagtctgtttttttcgttatgagatgta
ctttaaagtgatgttgtattaatgaattgtatcaactcttaatctgtttt
tagaggctaaattcatatggtaataacaaaatgagcggcccattattcag
aaggccatttgtacaattgtgctcaaaggagagaatgacgaatatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_81913425_81914524
seq2: B6Ng01-266H02.g_64_1160 (reverse)

seq1  CTATATCTGTCATTCTCTCCCTTTGAGCACATTTGTACAAATTGCCTTCT  50
      ||||||  |||||||||| |||||||||||| |||||||||| |||||| 
seq2  CTATATTCGTCATTCTCT-CCTTTGAGCACAATTGTACAAATGGCCTTC-  48

seq1  TGAATAATGGGCCGCTCATTTTGTTATTACCATATGAATTTAGCCTCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAATGGGCCGCTCATTTTGTTATTACCATATGAATTTAGCCTCTAA  98

seq1  AAACAGATTTAAGAGTTGATACAATTCATTAATACAAACATCACTTTAAA  150
      ||||||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  AAACAGA-TTAAGAGTTGATACAATTCATTAATAC-AACATCACTTTAAA  146

seq1  GTACATCTCATAACGAAAAAAACAGAC-TTTAATGTTTTCTATTGTGTAT  199
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTACATCTCATAACGAAAAAAACAGACTTTTAATGTTTTCTATTGTGTAT  196

seq1  ATTCCTTTGATGAATGCTTTCATGTAAATACAACTTTGCATACATGTTGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTGATGAATGCTTTCATGTAAATACAACTTTGCATACATGTTGA  246

seq1  GCTCTTTCCCACAGAAACAAGGTAAAGTACTAAAATATCAAACACCCGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTCCCACAGAAACAAGGTAAAGTACTAAAATATCAAACACCCGTT  296

seq1  TCAATAATACAGAAATTTTCGCCTAAGGTAGTTCACAGATCAAACAAAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAATACAGAAATTTTCGCCTAAGGTAGTTCACAGATCAAACAAAAT  346

seq1  TCTCTAGAAGAAATCTCCAGGATCCCACATTTTAGACAGGCAAACATACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGAAGAAATCTCCAGGATCCCACATTTTAGACAGGCAAACATACT  396

seq1  GCTATAGGTAAGAAGTGCAATGAGTTTGTACCCACTGTGCCTGCCCTCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGGTAAGAAGTGCAATGAGTTTGTACCCACTGTGCCTGCCCTCTG  446

seq1  TAGTCTCCTCCACCAGGGCTCTTCATTAAAGAATGATGCCAGAGTCTATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCCTCCACCAGGGCTCTTCATTAAAGAATGATGCCAGAGTCTATA  496

seq1  CCAGCATTGCACCACAGCTCACACCTCAGTAGAAAATCTTACATAATTAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATTGCACCACAGCTCACACCTCAGTAGAAAATCTTACATAATTAC  546

seq1  CTACTCTTTCTTCTGACCAGAGCTTTGTATACCCTCAACATAGGCCTAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTTTCTTCTGACCAGAGCTTTGTATACCCTCAACATAGGCCTAAA  596

seq1  ATCTGAGGTGGGGGAGAGGGTGAGGCTGGGGTGCAACCTCTGAAAGAGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGGTGGGGGAGAGGGTGAGGCTGGGGTGCAACCTCTGAAAGAGGC  646

seq1  ACAGTGTAAGTAAGTCAGTGTGTGCTTGACTACACAGGATCTAACCACAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTAAGTAAGTCAGTGTGTGCTTGACTACACAGGATCTAACCACAG  696

seq1  CCATTTGGTCTTGTAGATGGATAGATCCACCTAGGCTGCTCTGAGCTTAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGGTCTTGTAGATGGATAGATCCACCTAGGCTGCTCTGAGCTTAG  746

seq1  CGTGGCTTCGAGTGTGGTCCTGTGCTATCTTCGCCAGGCCCTGGTTCTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCTTCGAGTGTGGTCCTGTGCTATCTTCGCCAGGCCCTGGTTCTGC  796

seq1  CTAGAATTATGGCGGTTCCTTCATTGCTTCTTTGGTGCCTCAGAAGCTGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATTATGGCGGTTCCTTCATTGCTTCTTTGGTGCCTCAGAAGCTGC  846

seq1  CAGCCCCCTGAGAAAATGGCTCAGGGTGTTAACTTCTTTCTTTGTCTGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCCTGAGAAAATGGCTCAGGGTGTTAACTTCTTTCTTTGTCTGAA  896

seq1  ATCTACTTTGCTGTCTTTGCTGTCTACTAAATAAAATGGATAACTCACTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTTTGCTGTCTTTGCTGTCTACTAAATAAAATGGATAACTCACTA  946

seq1  AAGGTCAGGGGCAACTTCCCCACTTAATTATCCTGGTGACAACTGACCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAGGGGCAACTTCCCCACTTAATTATCCTGGTGACAACTGACCTT  996

seq1  TATCTTAAAATGCTGTGTTGAATTCCTTCTCTTAGGAGAAGACTAATTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAAAATGCTGTGTTGAATTCCTTCTCTTAGGAGAAGACTAATTTT  1046

seq1  AGTTGTATCTTACTTTTTCTTCTGTCCAACAAAACCTGGCACATAGAATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTATCTTACTTTTTCTTCTGTCCAACAAAACCTGGCACATAGAATT  1096

seq1  C  1100
      |
seq2  C  1097


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