BAC Information

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BAC

Clone NameB6Ng01-266M01
Chromosome9 (Build37)
Map Location 70,393,333 - 70,608,334
singlet/doubletdoublet
Overlap geneSltm, B230380D07Rik, Adam10, Cycs-ps1
Upstream geneFoxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik, Myo1e, Ccnb2, Rnf111
Downstream geneLipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537, Cgnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266M01.bB6Ng01-266M01.g
ACCGA070067GA070068
length1,0511,186
definitionB6Ng01-266M01.b B6Ng01-266M01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,393,333 - 70,394,784)(70,607,142 - 70,608,334)
sequence
gaattccaggatagccagggctctacagagaaactctgtctcaaaaaaca
aaaacaaaaacaacaacaacaaaaaacttacgtcaggaatgaccatgttt
ttgtataggtttcagattcacataatttggtgatagcagacaagctgcgt
ttcaagttaatgattttagtactgattatgccatctgatttattcagttt
atacatgcttttattgtttgattttgaagtttttattttgttttatattt
gtagctctgggtatatatgtaattaaatatatatgtaaaaaacataaaca
gtgtatgtttggtctcaaggtaaaactctgggccatgccatgggtttagt
ccttattactgttcttcctctacctgaaatatgttaaatgattatgctca
gataggttagaggaaaaggagtttacagtcttaaatatagaatagaatag
agtttaagccacacagttagaaggacacaagtccatggtatggattacat
tgtagtgggctctggtatttgtaataatatgtagctaatatcaaatagtt
tatgtcatggattagttctcagttttttttacagtctctttcctgggagc
tttttaataagtaacctagatgaaagcttctcccgttgagagtcactatc
gtattacttgggtgtgtattaagaaagcagttaaacaggtagagctaata
atgccttcctgccttgtttcagagatactgtatctgatttcttctagatt
ttcaacctcctataaactttagcaaattatgtatttaatcagtatagttc
agaattaaatataatagcttagttggtattgaaactaattttcagtgcgt
acaggctttaaaaaaaatgtaggatttccctctatggaaataagtataat
gtagatttttggtttgcacaaacatctgaaactttatatatttgtagtaa
ataacacataatattatattttttattctgtaaaactttacaaatcagct
ggcagtggtggcaccccgcctttaatcctagcacttgggagcagaggcaa
g
gaattcagagacagataccaagagctcattagatgactcgtcgagcccaa
agcttctggttcagagagcatcactcaaggctaattgtcccaagagtaag
taagaagaagacattcaacatccttctctgacatctgtgtgtgtacatac
aaaggtgaatactcaggtgcatgtaccacacacaaaataccctcaataca
cacacaacacacacccgaaagaaacctcaaaatgtcctcaagtaattaag
gtattcattattctaaagggaaaaaatgttggacattagaatagcagttg
tatttaacttgaccttagtttgaatacccaaaaacctaactctttacgaa
caaacaataataccaagtcactctgattttacatttcctcatcagatgtc
tcacatcctactcttcctgatactgccctgcttttctcctgagcctagat
tcagcctctggaaactacttgctctgtatattaccttgctttatgcttct
gctccttacaatttggttttttattaagtatggtactagcaacaatctca
tcattcaaattgagaaacagaaagaaaagttccaatactgaatggctgtt
aatgtgatcaaagaaacagtagctatgttagaaggcattgaatattgcct
tctaatgagtagcttgttatacatggaagtgctaaaatatacaaactgat
acagacggaataaacattgtccctaacttggcaaggagttacattcttaa
aaatagctaattgtgacctacctgcctagtcttaatctctcaggaatggt
gtaacagatctcaccaacagccgtaaaaggaagaatggacggtaaacaaa
gaatgcttattatttgctacagcagatacaggaacaaaactggcaaagaa
aggaataaaaaaaaaaaaaacacctccggacacacatacacacaatggac
tatcctgactggatgtcaaaaaggactcaggtttcatgagtatactacaa
ctctagttaaaaagaaatagaaaaactactttctagctaagtacccaagt
gtttgttcgtaagagtaggtttttgggtattctaagtcagtaaatagtca
gaatgcattggtgaacagactgcattcctagcaataagagctgaaacgaa
ggattccagtttggaggtcagcctaggcttatccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_70393333_70394784
seq2: B6Ng01-266M01.b_45_1095

seq1  GAATTCCAGGATAGCCAGGGCTCTACAGAGAAACTCTGTCTCAAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGATAGCCAGGGCTCTACAGAGAAACTCTGTCTCAAAAAACA  50

seq1  AAAACAAAAACAACAACAACAAAAAACTTACGTCAGGAATGACCATGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAACAACAACAACAAAAAACTTACGTCAGGAATGACCATGTTT  100

seq1  TTGTATAGGTTTCAGATTCACATAATTTGGTGATAGCAGACAAGCTGCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAGGTTTCAGATTCACATAATTTGGTGATAGCAGACAAGCTGCGT  150

seq1  TTCAAGTTAATGATTTTAGTACTGATTATGCCATCTGATTTATTCAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTAATGATTTTAGTACTGATTATGCCATCTGATTTATTCAGTTT  200

seq1  ATACATGCTTTTATTGTTTGATTTTGAAGTTTTTATTTTGTTTTATATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGCTTTTATTGTTTGATTTTGAAGTTTTTATTTTGTTTTATATTT  250

seq1  GTAGCTCTGGGTATATATGTAATTAAATATATATGTAAAAAACATAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTCTGGGTATATATGTAATTAAATATATATGTAAAAAACATAAACA  300

seq1  GTGTATGTTTGGTCTCAAGGTAAAACTCTGGGCCATGCCATGGGTTTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTTTGGTCTCAAGGTAAAACTCTGGGCCATGCCATGGGTTTAGT  350

seq1  CCTTATTACTGTTCTTCCTCTACCTGAAATATGTTAAATGATTATGCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTACTGTTCTTCCTCTACCTGAAATATGTTAAATGATTATGCTCA  400

seq1  GATAGGTTAGAGGAAAAGGAGTTTACAGTCTTAAATATAGAATAGAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGTTAGAGGAAAAGGAGTTTACAGTCTTAAATATAGAATAGAATAG  450

seq1  AGTTTAAGCCACACAGTTAGAAGGACACAAGTCCATGGTATGGATTACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAGCCACACAGTTAGAAGGACACAAGTCCATGGTATGGATTACAT  500

seq1  TGTAGTGGGCTCTGGTATTTGTAATAATATGTAGCTAATATCAAATAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGGGCTCTGGTATTTGTAATAATATGTAGCTAATATCAAATAGTT  550

seq1  TATGTCATGGATTAGTTCTCAGTTTTTTTTACAGTCTCTTTCCTGGGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCATGGATTAGTTCTCAGTTTTTTTTACAGTCTCTTTCCTGGGAGC  600

seq1  TTTTTAATAAGTAACCTAGATGAAAGCTTCTCCCGTTGAGAGTCACTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATAAGTAACCTAGATGAAAGCTTCTCCCGTTGAGAGTCACTATC  650

seq1  GTATTACTTGGGTGTGTATTAAGAAAGCAGTTAAACAGGTAGAGCTAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTACTTGGGTGTGTATTAAGAAAGCAGTTAAACAGGTAGAGCTAATA  700

seq1  ATGCCTTCCTGCCTTGTTTCAGAGATACTGTATCTGATTTCTTCTAGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTCCTGCCTTGTTTCAGAGATACTGTATCTGATTTCTTCTAGATT  750

seq1  TTCAACCTCCTATAAACTTTAGCAAATTATGTATTTAATCAGTATAGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCTCCTATAAACTTTAGCAAATTATGTATTTAATCAGTATAGTTC  800

seq1  AGAATTAAATATAATAGCTTAGTTGGTATTGAAACTAATTTTCAGTGCGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAAATATAATAGCTTAGTTGGTATTGAAACTAATTTTCAGTGCGT  850

seq1  ACAGGCTTTAAAAAAAATGTAGGATTTCCCTCTATGGAAATAAGTATAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTTTAAAAAAAATGTAGGATTTCCCTCTATGGAAATAAGTATAAT  900

seq1  GTAGATTTTTGGTTTGCACAAACATCTGAAACTTTATATATTTGTAAGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTAGATTTTTGGTTTGCACAAACATCTGAAACTTTATATATTTGT-AGTA  949

seq1  AATAACACATAATATTATA-TTTTTATTCTGTAAAACTTTACAAAATCAG  999
      ||||||||||||||||||| |||||||||||||||||||||| |||||||
seq2  AATAACACATAATATTATATTTTTTATTCTGTAAAACTTTAC-AAATCAG  998

seq1  CTGGGCAGTGGTGGCA-CACGCCTTTAATCCTAGCACTTGGGAGGCAGAG  1048
      || ||||||||||||| | |||||||||||||||||||||||| ||||||
seq2  CT-GGCAGTGGTGGCACCCCGCCTTTAATCCTAGCACTTGGGA-GCAGAG  1046

seq1  GC-AGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTC  1097
      || ||                                             
seq2  GCAAG---------------------------------------------  1051

seq1  TAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAAAA  1147
                                                        
seq2  --------------------------------------------------  1051

seq1  AAAAAAAAAAAAACCCAAAAAAAAAAAAAAAAAAAACTTTTCAAAATTAT  1197
                                                        
seq2  --------------------------------------------------  1051

seq1  CAACTAGGATAGTATAGTATCAACCACAGAGCACAGTTTGAGTCGTTCAG  1247
                                                        
seq2  --------------------------------------------------  1051

seq1  TCCCAGTGCATGGTCGGTCATTCTGCCCACTAACTGCTTTATACTGTGTT  1297
                                                        
seq2  --------------------------------------------------  1051

seq1  AAATGTTAGTCACTAAAAAAAATGGAGTGTGGAGTGGAGTGAACACAAGA  1347
                                                        
seq2  --------------------------------------------------  1051

seq1  TTTTCACAGCTGCTTCTTCCTTGCCTGCCAAACTGAAAGATCTGTAATAC  1397
                                                        
seq2  --------------------------------------------------  1051

seq1  AAGGATCAGTGAAGCCTAGGATATAATCTTTACACCTCTAATGGCCAGAG  1447
                                                        
seq2  --------------------------------------------------  1051

seq1  GCAAG  1452
           
seq2  -----  1051

seq1: chr9_70607142_70608334
seq2: B6Ng01-266M01.g_67_1252 (reverse)

seq1  CTGGAT-AGCCTAGGCTGACCTCAAACTTGTGATCTTTCTGTCTCAGCCT  49
      |||||| |||||||||||||||| ||  ||  ||| ||| || |||| ||
seq2  CTGGATAAGCCTAGGCTGACCTCCAAACTGGAATCCTTC-GTTTCAG-CT  48

seq1  CTTTAATGCTGGGATTGCAGTCTGTTCCACCAAATGCA-TCTGA-TA-TT  96
      | ||| |||| ||| ||||||||||| |||| |||||| ||||| || ||
seq2  C-TTATTGCTAGGAATGCAGTCTGTT-CACC-AATGCATTCTGACTATTT  95

seq1  ATGAACTTAGAATACCCAAAAACCTAACTCTTTACGAACAAACAACTTGG  146
      |   ||||||||||||||||||||| |||| |||||||||||| ||||||
seq2  ACTGACTTAGAATACCCAAAAACCT-ACTC-TTACGAACAAAC-ACTTGG  142

seq1  GTACTTAGCTTAGAAAGTAGTTTTTCTTAATTTCTTTTTTAACTAGAGTT  196
      ||||||||| |||||||||||||||||  ||||| |||||||||||||||
seq2  GTACTTAGC-TAGAAAGTAGTTTTTCT--ATTTC-TTTTTAACTAGAGTT  188

seq1  GTAGTATACTCATGAAACCTGAGTCCTTTTTGACATCCAGTCAGGATAGT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTATACTCATGAAACCTGAGTCCTTTTTGACATCCAGTCAGGATAGT  238

seq1  CCATTGTGTGTATGTGTGT-CGGAGGTGTTTTTTTTTTTTTTATTCCTTT  295
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCATTGTGTGTATGTGTGTCCGGAGGTGTTTTTTTTTTTTTTATTCCTTT  288

seq1  CTTTGCCAGTTTTGTTCCTGTATCTGCTGTAGCAAATAATAAGCATTCTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCAGTTTTGTTCCTGTATCTGCTGTAGCAAATAATAAGCATTCTT  338

seq1  TGTTTACCGTCCATTCTTCCTTTTACGGCTGTTGGTGAGATCTGTTACAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACCGTCCATTCTTCCTTTTACGGCTGTTGGTGAGATCTGTTACAC  388

seq1  CATTCCTGAGAGATTAAGACTAGGCAGGTAGGTCACAATTAGCTATTTTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTGAGAGATTAAGACTAGGCAGGTAGGTCACAATTAGCTATTTTT  438

seq1  AAGAATGTAACTCCTTGCCAAGTTAGGGACAATGTTTATTCCGTCTGTAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGTAACTCCTTGCCAAGTTAGGGACAATGTTTATTCCGTCTGTAT  488

seq1  CAGTTTGTATATTTTAGCACTTCCATGTATAACAAGCTACTCATTAGAAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGTATATTTTAGCACTTCCATGTATAACAAGCTACTCATTAGAAG  538

seq1  GCAATATTCAATGCCTTCTAACATAGCTACTGTTTCTTTGATCACATTAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATTCAATGCCTTCTAACATAGCTACTGTTTCTTTGATCACATTAA  588

seq1  CAGCCATTCAGTATTGGAACTTTTCTTTCTGTTTCTCAATTTGAATGATG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATTCAGTATTGGAACTTTTCTTTCTGTTTCTCAATTTGAATGATG  638

seq1  AGATTGTTGCTAGTACCATACTTAATAAAAAACCAAATTGTAAGGAGCAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTTGCTAGTACCATACTTAATAAAAAACCAAATTGTAAGGAGCAG  688

seq1  AAGCATAAAGCAAGGTAATATACAGAGCAAGTAGTTTCCAGAGGCTGAAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATAAAGCAAGGTAATATACAGAGCAAGTAGTTTCCAGAGGCTGAAT  738

seq1  CTAGGCTCAGGAGAAAAGCAGGGCAGTATCAGGAAGAGTAGGATGTGAGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTCAGGAGAAAAGCAGGGCAGTATCAGGAAGAGTAGGATGTGAGA  788

seq1  CATCTGATGAGGAAATGTAAAATCAGAGTGACTTGGTATTATTGTTTGTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGATGAGGAAATGTAAAATCAGAGTGACTTGGTATTATTGTTTGTT  838

seq1  CGTAAAGAGTTAGGTTTTTGGGTATTCAAACTAAGGTCAAGTTAAATACA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAAGAGTTAGGTTTTTGGGTATTCAAACTAAGGTCAAGTTAAATACA  888

seq1  ACTGCTATTCTAATGTCCAACATTTTTTCCCTTTAGAATAATGAATACCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTATTCTAATGTCCAACATTTTTTCCCTTTAGAATAATGAATACCT  938

seq1  TAATTACTTGAGGACATTTTGAGGTTTCTTTCGGGTGTGTGTTGTGTGTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACTTGAGGACATTTTGAGGTTTCTTTCGGGTGTGTGTTGTGTGTG  988

seq1  TATTGAGGGTATTTTGTGTGTGGTACATGCACCTGAGTATTCACCTTTGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGGGTATTTTGTGTGTGGTACATGCACCTGAGTATTCACCTTTGT  1038

seq1  ATGTACACACACAGATGTCAGAGAAGGATGTTGAATGTCTTCTTCTTACT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACACACACAGATGTCAGAGAAGGATGTTGAATGTCTTCTTCTTACT  1088

seq1  TACTCTTGGGACAATTAGCCTTGAGTGATGCTCTCTGAACCAGAAGCTTT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTGGGACAATTAGCCTTGAGTGATGCTCTCTGAACCAGAAGCTTT  1138

seq1  GGGCTCGACGAGTCATCTAATGAGCTCTTGGTATCTGTCTCTGAATTC  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCGACGAGTCATCTAATGAGCTCTTGGTATCTGTCTCTGAATTC  1186