BAC Information

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BAC

Clone NameB6Ng01-267E01
Chromosome9 (Build37)
Map Location 107,386,296 - 107,603,318
singlet/doubletdoublet
Overlap geneCacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f
Upstream geneRrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp, Armet, Dock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik
Downstream geneRbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267E01.bB6Ng01-267E01.g
ACCGA070433GA070434
length1,116105
definitionB6Ng01-267E01.b B6Ng01-267E01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,386,296 - 107,387,383)(107,603,214 - 107,603,318)
sequence
gaattcctgaggccacgcccagcccctcactatgaaccccaagtgctggg
attatcagcatgtggcttgacacccagctcctctgttttcttgtcagtac
agtcaaaagtagatacttttattttcccattttacagggaaggaaaactg
aggctcgaaaagctgaaatctctctggaggttctttctcaaacaaagtcc
aacccaaaaggctgaggaagcagaggctgagccagcctgatttaggagtc
tctcttccttaggtatggcatagtggggaactgactcgcagacccttgtc
ccagtggggaggggagctgaagtctgagtggaagcgggcatggtatagat
gccctaaataggcaggaacatcctgcacggctaccccccccccactcacc
ctctccagctggtaccaaggctatgtggtggttgctaggcatctgaaggg
cccaggtggggcctacctgtcatggagcggctacgcagcatgaggtaggc
acgaggcccaggcaggagcaaggccgcctctgcctgcccgccctcctctc
acttggcagcagcacacagaagccattagcgcctggcagcccgtgtccca
cagctctgacaaacgccttaaatgttgtcgccacggctccagctgtcccg
ccggccgcctttactcctcataataaccaagtgtcgtggctgattgcagc
agcggggcgcagccagtattcagaacagcttttacactgggcgttttcca
cctggcaaccaggctgtgcccaccctgccttccacctcccgggcctttgt
ctggtttgtcactttttgcccaggcttctcaacattgaccccctgggcag
ctggtgcccagctcttatgtcccagggtagtacccactttgcagtccacc
aaaagctagcgggcaagtctcaagcatccaactcaaagctacatccttgg
gtggaaatatatggctttcaattccactcttccggaatgacctctgtggg
gggagccctggctttaccttggttcagcttttcatctctttaaccctcgc
ttgactaggaacgtcagtgaaggtctaagggctggggctggcctgcaata
aaggcattattctggg
ctaccaggggcgggaggagggcaggcagccctcatgggtgagatggtgct
tcaaacagaggaataagggatggaaaggaaagagttggggcagagggggg
tgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_107386296_107387383
seq2: B6Ng01-267E01.b_46_1161

seq1  GAATTCCTGAGGCCACGCCCAGCCCCTCACTATGAACCCCAAGTGCTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAGGCCACGCCCAGCCCCTCACTATGAACCCCAAGTGCTGGG  50

seq1  ATTATCAGCATGTGGCTTGACACCCAGCTCCTCTGTTTTCTTGTCAGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAGCATGTGGCTTGACACCCAGCTCCTCTGTTTTCTTGTCAGTAC  100

seq1  AGTCAAAAGTAGATACTTTTATTTTCCCATTTTACAGGGAAGGAAAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAAAGTAGATACTTTTATTTTCCCATTTTACAGGGAAGGAAAACTG  150

seq1  AGGCTCGAAAAGCTGAAATCTCTCTGGAGGTTCTTTCTCAAACAAAGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCGAAAAGCTGAAATCTCTCTGGAGGTTCTTTCTCAAACAAAGTCC  200

seq1  AACCCAAAAGGCTGAGGAAGCAGAGGCTGAGCCAGCCTGATTTAGGAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAAAGGCTGAGGAAGCAGAGGCTGAGCCAGCCTGATTTAGGAGTC  250

seq1  TCTCTTCCTTAGGTATGGCATAGTGGGGAACTGACTCGCAGACCCTTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCTTAGGTATGGCATAGTGGGGAACTGACTCGCAGACCCTTGTC  300

seq1  CCAGTGGGGAGGGGAGCTGAAGTCTGAGTGGAAGCGGGCATGGTATAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGGGAGGGGAGCTGAAGTCTGAGTGGAAGCGGGCATGGTATAGAT  350

seq1  GCCCTAAATAGGCAGGAACATCCTGCACGGCTACCCCCCCCCCACTCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAAATAGGCAGGAACATCCTGCACGGCTACCCCCCCCCCACTCACC  400

seq1  CTCTCCAGCTGGTACCAAGGCTATGTGGTGGTTGCTAGGCATCTGAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGCTGGTACCAAGGCTATGTGGTGGTTGCTAGGCATCTGAAGGG  450

seq1  CCCAGGTGGGGCCTACCTGTCATGGAGCGGCTACGCAGCATGAGGTAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTGGGGCCTACCTGTCATGGAGCGGCTACGCAGCATGAGGTAGGC  500

seq1  ACGAGGCCCAGGCAGGAGCAAGGCCGCCTCTGCCTGCCCGCCCTCCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGCCCAGGCAGGAGCAAGGCCGCCTCTGCCTGCCCGCCCTCCTCTC  550

seq1  ACTTGGCAGCAGCACACAGAAGCCATTAGCGCCTGGCAGCCCGTGTCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCAGCAGCACACAGAAGCCATTAGCGCCTGGCAGCCCGTGTCCCA  600

seq1  CAGCTCTGACAAACGCCTTAAATGTTGTCGCCACGGCTCCAGCTGTCCCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTGACAAACGCCTTAAATGTTGTCGCCACGGCTCCAGCTGTCCCG  650

seq1  CCGGCCGCCTTTACTCCTCATAATAACCAAGTGTCGTGGCTGATTGCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCCGCCTTTACTCCTCATAATAACCAAGTGTCGTGGCTGATTGCAGC  700

seq1  AGCGGGGCGCAGCCAGTATTCAGAACAGCTTTTACACTGGGCG-TTTCCA  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGCGGGGCGCAGCCAGTATTCAGAACAGCTTTTACACTGGGCGTTTTCCA  750

seq1  CCTGGCAACCAGGCTGTGCCCACCCTGCCTTCCACCT-CCGGGCCTTTGT  798
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCTGGCAACCAGGCTGTGCCCACCCTGCCTTCCACCTCCCGGGCCTTTGT  800

seq1  CTGG-TTGTCAC-TTTTGCCAAGGC-TCTCAACA-TGA-CCCCTGGGCAG  843
      |||| ||||||| ||||||| |||| |||||||| ||| |||||||||||
seq2  CTGGTTTGTCACTTTTTGCCCAGGCTTCTCAACATTGACCCCCTGGGCAG  850

seq1  CTGGTGCCCAGC-CTTATGT-CCAGGGTAGTACCCACGTTGCAG-CCACC  890
      |||||||||||| ||||||| |||||||||||||||| |||||| |||||
seq2  CTGGTGCCCAGCTCTTATGTCCCAGGGTAGTACCCACTTTGCAGTCCACC  900

seq1  -AAAGCTAGCGGGC-AGTCTCAGGCATCC-ACTCAAAGCCACATCC-TGG  936
       ||||||||||||| ||||||| |||||| ||||||||| |||||| |||
seq2  AAAAGCTAGCGGGCAAGTCTCAAGCATCCAACTCAAAGCTACATCCTTGG  950

seq1  GTGGAAATATATGGC-TTCAATTCCCACTCTTCCGG-ATGACCTCTGT--  982
      ||||||||||||||| ||||||| |||||||||||| |||||||||||  
seq2  GTGGAAATATATGGCTTTCAATT-CCACTCTTCCGGAATGACCTCTGTGG  999

seq1  GGGGAGCCCTGGCTTCACCTTGGTCCAGC--TTCATCCCTT--AGCCTCG  1028
      ||||||||||||||| |||||||| ||||  |||||| |||  | |||||
seq2  GGGGAGCCCTGGCTTTACCTTGGTTCAGCTTTTCATCTCTTTAACCCTCG  1049

seq1  CT--GCCAGGAA-GGCAGTG-AGGTC-AGAGGCTGGTGCTGGCGTG-GAT  1072
      ||   | ||||| | ||||| ||||| |  |||||| |||||| ||  ||
seq2  CTTGACTAGGAACGTCAGTGAAGGTCTAAGGGCTGGGGCTGGCCTGCAAT  1099

seq1  AAAGGCA-TATTCTGGG  1088
      ||||||| |||||||||
seq2  AAAGGCATTATTCTGGG  1116

seq1: chr9_107603214_107603318
seq2: B6Ng01-267E01.g_71_175 (reverse)

seq1  CCCCACCCCCCTCTGCCCCAACTCTTTCCTTTCCATCCCTTATTCCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCCCCTCTGCCCCAACTCTTTCCTTTCCATCCCTTATTCCTCTG  50

seq1  TTTGAAGCACCATCTCACCCATGAGGGCTGCCTGCCCTCCTCCCGCCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGCACCATCTCACCCATGAGGGCTGCCTGCCCTCCTCCCGCCCCT  100

seq1  GGTAG  105
      |||||
seq2  GGTAG  105