BAC Information

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BAC

Clone NameB6Ng01-270A15
Chromosome9 (Build37)
Map Location 91,087,332 - 91,221,662
singlet/doubletdoublet
Overlap geneLOC621576
Upstream geneAdamts7, Tbc1d2b, LOC100039777, LOC100039925, EG434428
Downstream geneZic1, Zic4, LOC331000, Plscr1, Plscr2, 1700057G04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270A15.bB6Ng01-270A15.g
ACCGA072483GA072484
length5741,116
definitionB6Ng01-270A15.b B6Ng01-270A15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,087,332 - 91,087,906)(91,220,536 - 91,221,662)
sequence
gaattcaagactagcctgctctccagagtaagttccaggacagctatggt
cacatgaagaaaccctgtcctgaaaaagcaaatagataagagagagagaa
agagacagagacagagacagacacagagacacagagacagaattaatgta
aaatcatgcaaccctattagttaggaattagctgaaaggacgctgatata
gcggtctcttgtgagactaggccggggcctagcaaacacataagcagatg
ttcacagtcagctattggatggagcacagggcccccaatggaggagctag
agaaagtacccaaggagctaaagggatctgcaaccctataggtggaacaa
cattatgaattaaccagtaccccggagctcttgactctagctgcatatgt
atcaaaagatggcctagtcggccatctctggaaagagaggtccattggac
acgcaaactttatatgccccagtacaggggaatgccagggccaaaaaaat
gggaatgggtgggtaggaaagtggggggagggcatgggggacttttggga
ttccctactaaatgtcttgggaaa
gaattccatagtaggattaactaagaataagctttaaactctttaaagtt
ttttttttttttttttaattatctggtggtcatagaacgatgtctgtttg
ggtagctatgctctcttgtgatcctgccattttactttcctagtgatttg
aatcagatactgtagtcttcaatcactcaggcaccattcttagtcatgga
ctgtgtcacagcccgtcaacttcaagagatggttgaagtggaaatttctg
gtttctttggagactcagttctgtcacgtgatgtttttctggaagctgtc
ttatgagaggatgttttgacgacgcaggcatgtgagagggcgctttgctg
atcacagacatgtggtgcttttctagaagctgtcttgtgaaagcgcatgt
gacgttttgctggaacagatgcttgagaggacacgtgatgcttgggaaag
gtagaagattaacccaacagacagttgctctggcactgtgttgcttctct
gggctctgctgagctggtctttactgatgatgctgtggcattggttcacc
ttgccttcttcacagatcattgtttacagagagaaatggaccaaacaact
tctcatgatagtccagttgcttcctattacttttgtggacataggctgac
tatcagagccttcaggattctgccagatggaaccgccattgttggtttgt
gaataatggctgtgagtggatggagctaccactgcggatttgtgtgaact
gagctgctgatatcctgacaacaaagactgcaatcacctctcccccccac
cccccaaaaaaaaccaaacaaaccctattcctaaacaggcccacatccct
ttttgcctattaacctttccttttctttaccactggtggagagtacactg
gtggtggctagaaggaggttaaagcatttaagaaatcttattaaagtagt
tttgaaaatacagcctgcagatgcatagattttcctactatcccatagat
atgtaaagaaatacaatattttactctcaaatatggacatgtgaaaacca
gaaagacttgggcggactgctggcatggtgtgtaacaatattgatggata
tactctttggcctact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_91087332_91087906
seq2: B6Ng01-270A15.b_42_615

seq1  GAATTCAAGACTAGCCTGCTCTCCAGAGTAAGTTCCAGGACAGCTATGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACTAGCCTGCTCTCCAGAGTAAGTTCCAGGACAGCTATGGT  50

seq1  CACATGAAGAAACCCTGTCCTGAAAAAGCAAATAGATAAGAGAGAGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAAGAAACCCTGTCCTGAAAAAGCAAATAGATAAGAGAGAGAGAA  100

seq1  AGAGACAGAGACAGAGACAGACACAGAGACACAGAGACAGAATTAATGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGAGACAGAGACAGACACAGAGACACAGAGACAGAATTAATGTA  150

seq1  AAATCATGCAACCCTATTAGTTAGGAATTAGCTGAAAGGACGCTGATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATGCAACCCTATTAGTTAGGAATTAGCTGAAAGGACGCTGATATA  200

seq1  GCGGTCTCTTGTGAGACTAGGCCGGGGCCTAGCAAACACATAAGCAGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTCTCTTGTGAGACTAGGCCGGGGCCTAGCAAACACATAAGCAGATG  250

seq1  TTCACAGTCAGCTATTGGATGGAGCACAGGGCCCCCAATGGAGGAGCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGTCAGCTATTGGATGGAGCACAGGGCCCCCAATGGAGGAGCTAG  300

seq1  AGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAA  350

seq1  CATTATGAATTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGAATTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGT  400

seq1  ATCAAAAGATGGCCTAGTCGGCCATCTCTGGAAAGAGAGGTCCATTGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAGATGGCCTAGTCGGCCATCTCTGGAAAGAGAGGTCCATTGGAC  450

seq1  ACGCAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAAAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAAAAAAT  500

seq1  GGGAATGGGTGGGTAGGAAAGTGGGGGGAGGGCATGGGGGACTTTTGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGGGTGGGTAGGAAAGTGGGGGGAGGGCATGGGGGACTTTTGGGA  550

seq1  TAGCATTCTAAATGTAATTGGGAAA  575
      |  | | ||||||||  ||||||||
seq2  TTCCCTACTAAATGT-CTTGGGAAA  574

seq1: chr9_91220536_91221662
seq2: B6Ng01-270A15.g_62_1177 (reverse)

seq1  AGTA-GACAAAGAGTATATACAATTATATATGTACACA-CATGCAAGCAG  48
      |||| | |||||||||||| ||   ||||   |||||| ||||| |||| 
seq2  AGTAGGCCAAAGAGTATATCCATCAATATTGTTACACACCATGCCAGCA-  49

seq1  GTCGGCCCAAGTCTTTCTGGTTTTTCACATGGTCAATATTTGAAGAGTTA  98
      ||| |||||||||||||||| ||||||||| ||| ||||||| |||| ||
seq2  GTCCGCCCAAGTCTTTCTGG-TTTTCACAT-GTCCATATTTG-AGAG-TA  95

seq1  AAATATTGTATTTTCTTTACATATCTATGGGGATAGTAGGAAAAATCTAT  148
      |||||||||| ||||||||||||||||| ||||||||||| |||||||||
seq2  AAATATTGTA-TTTCTTTACATATCTAT-GGGATAGTAGG-AAAATCTAT  142

seq1  GCCATCTGCAGGCTTGTATTTTTCAAAACCTACTTTAATAAGATTTCTTA  198
      | ||||||||||| |||| ||||||||| |||||||||||||||||||||
seq2  G-CATCTGCAGGC-TGTA-TTTTCAAAA-CTACTTTAATAAGATTTCTTA  188

seq1  AATGCTTTAACCTCCCTTCTAGCCACCACCAGTGTACTCTCCACCAGTGG  248
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AATGCTTTAACCT-CCTTCTAGCCACCACCAGTGTACTCTCCACCAGTGG  237

seq1  TAAAGAAAAGGAAAGGTTAATAGGCAAAAAGGGATGTGGGCCTGTTTAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAAGGAAAGGTTAATAGGCAAAAAGGGATGTGGGCCTGTTTAGG  287

seq1  AATAGGGTTTGTTTGGTTTTTTTTGGGGGGTGGGGGGGAGAGGTGATTGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGGTTTGTTTGGTTTTTTTTGGGGGGTGGGGGGGAGAGGTGATTGC  337

seq1  AGTCTTTGTTGTCAGGATATCAGCAGCTCAGTTCACACAAATCCGCAGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTGTTGTCAGGATATCAGCAGCTCAGTTCACACAAATCCGCAGTG  387

seq1  GTAGCTCCATCCACTCACAGCCATTATTCACAAACCAACAATGGCGGTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTCCATCCACTCACAGCCATTATTCACAAACCAACAATGGCGGTTC  437

seq1  CATCTGGCAGAATCCTGAAGGCTCTGATAGTCAGCCTATGTCCACAAAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGCAGAATCCTGAAGGCTCTGATAGTCAGCCTATGTCCACAAAAG  487

seq1  TAATAGGAAGCAACTGGACTATCATGAGAAGTTGTTTGGTCCATTTCTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGGAAGCAACTGGACTATCATGAGAAGTTGTTTGGTCCATTTCTCT  537

seq1  CTGTAAACAATGATCTGTGAAGAAGGCAAGGTGAACCAATGCCACAGCAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAACAATGATCTGTGAAGAAGGCAAGGTGAACCAATGCCACAGCAT  587

seq1  CATCAGTAAAGACCAGCTCAGCAGAGCCCAGAGAAGCAACACAGTGCCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTAAAGACCAGCTCAGCAGAGCCCAGAGAAGCAACACAGTGCCAG  637

seq1  AGCAACTGTCTGTTGGGTTAATCTTCTACCTTTCCCAAGCATCACGTGTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTGTCTGTTGGGTTAATCTTCTACCTTTCCCAAGCATCACGTGTC  687

seq1  CTCTCAAGCATCTGTTCCAGCAAAACGTCACATGCGCTTTCACAAGACAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAGCATCTGTTCCAGCAAAACGTCACATGCGCTTTCACAAGACAG  737

seq1  CTTCTAGAAAAGCACCACATGTCTGTGATCAGCAAAGCGCCCTCTCACAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGAAAAGCACCACATGTCTGTGATCAGCAAAGCGCCCTCTCACAT  787

seq1  GCCTGCGTCGTCAAAACATCCTCTCATAAGACAGCTTCCAGAAAAACATC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCGTCGTCAAAACATCCTCTCATAAGACAGCTTCCAGAAAAACATC  837

seq1  ACGTGACAGAACTGAGTCTCCAAAGAAACCAGAAATTTCCACTTCAACCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGACAGAACTGAGTCTCCAAAGAAACCAGAAATTTCCACTTCAACCA  887

seq1  TCTCTTGAAGTTGACGGGCTGTGACACAGTCCATGACTAAGAATGGTGCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGAAGTTGACGGGCTGTGACACAGTCCATGACTAAGAATGGTGCC  937

seq1  TGAGTGATTGAAGACTACAGTATCTGATTCAAATCACTAGGAAAGTAAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGATTGAAGACTACAGTATCTGATTCAAATCACTAGGAAAGTAAAA  987

seq1  TGGCAGGATCACAAGAGAGCATAGCTACCCAAACAGACATCGTTCTATGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGATCACAAGAGAGCATAGCTACCCAAACAGACATCGTTCTATGA  1037

seq1  CCACCAGATAATTAAAAAAAAAAAAAAAAAACTTTAAAGAGTTTAAAGCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGATAATTAAAAAAAAAAAAAAAAAACTTTAAAGAGTTTAAAGCT  1087

seq1  TATTCTTAGTTAATCCTACTATGGAATTC  1127
      |||||||||||||||||||||||||||||
seq2  TATTCTTAGTTAATCCTACTATGGAATTC  1116