BAC Information

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BAC

Clone NameB6Ng01-270H01
Chromosome9 (Build37)
Map Location 69,058,073 - 69,214,442
singlet/doubletdoublet
Overlap geneRora
Upstream gene9530091C08Rik
Downstream geneNarg2, EG665815, EG244913, Anxa2, Foxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik, Myo1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270H01.bB6Ng01-270H01.g
ACCGA072777GA072778
length1,093405
definitionB6Ng01-270H01.b B6Ng01-270H01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,213,336 - 69,214,442)(69,058,073 - 69,058,484)
sequence
gaattctaatttagttttcagcttggttctatttgagtcacttcatcccg
gaaaatgctataacccatggctcccagactcagtgggaggtgactagtac
aggtgcgtctacagactcgagggcaccagctcggtcctttatagccctag
tcatggatttgtgcactgttagccaaaataccatgtgctggggtaaggct
ttgactccattctgtggatctgtttcagccccgactagctggcaggcaag
caggcaggctcacggtcgctacggaggagaggcagcaggcctggggtgag
tcaggtcactttacgtgggaacgagtcagctttcaatcaaacccttattc
atttttgaaaatttaattttcattacggttctgcttcaggttcagctaac
caagatcccatggcaaaaaaaaaaaaagggggggggtttgttctagttcg
gggggaaaaaaatgaaacccacctctgctcagcatggcttctagttcaga
ggtttctctgctaatcaaaagagcggcagtgcacctttagtgctgtgcgg
tggttaaagagcaggcttaaaatgccccggctctcgaggatttaaattta
gatccataaagagatgttgtgtaaaaaccgtgaagaacgttcaatttgtt
ctatttggagatttttggactggaaattttcacttaaaaaaaaaagatgt
tttacggggtacagaggtggaggtgccgtctaaggaactcagcctttatg
gctgtactgagggtttctgtgttcaagtcagaacccgctgggtctctgcc
accccgggtctctgcggcagctaattgaaatatcccaaaggagtttaata
agcccatgtatagaatcactgggaatagcagatcatttgaaaaactgtaa
aggctcttatcaaaggtttctaataatagtgccatatttaaaaattgatt
aaatatagagagggtgttagcataacgcacgtgatgggacatttcattgt
ctgtgtcatcagtgtttctgagcatcgtctcccagaaacagctatgccct
gacatagaaaacggattgttgggtctctgccgagatttgattt
ttttgtgaatatcctttaagtatcatgcatagctgccttccctggttctg
tttataactttttcttgaaccaagaaaacaagaggaaccaaattatcccc
tgcaggatcaattccttgagtggaaaccttgcttataaatgagagaatga
gacgtgacccaataaaagaatctattttaattttaatttatttcctggtg
gccttttatgcctccttaggcgatgacctaaccaattctttcttaacact
gattttttttttctttccaaggtcaaaaagcactttgtagttattgtaag
aagagaataaatgggtttttttttgttgttgttgtttgtttttggttttt
tgggttttagaatgttttgttaagaaaagttttgttgactcccaccacat
aaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_69213336_69214442
seq2: B6Ng01-270H01.b_45_1137 (reverse)

seq1  AAATCAAAACAAAACACCGCAGAGACACAAACAATTCTGTTTTCCTATTG  50
           ||| |||| | | |||||||| | ||||| || ||||| ||| ||
seq2  -----AAATCAAATCTCGGCAGAGAC-CCAACAA-TCCGTTTT-CTA-TG  41

seq1  TCAGGGCATAGCTGTTTCTGGGGAGACGATGGCCCAGAAACACTGATGAC  100
      ||||||||||||||||||| |||||||||| || ||||||||||||||||
seq2  TCAGGGCATAGCTGTTTCT-GGGAGACGAT-GCTCAGAAACACTGATGAC  89

seq1  ACAGACAATGGAAATGTTCCCTTCACGTGCGTTATGCTAACACCCTCTCT  150
      ||||||||| |||||| |||| ||||||||||||||||||||||||||||
seq2  ACAGACAAT-GAAATG-TCCCATCACGTGCGTTATGCTAACACCCTCTCT  137

seq1  ATATTTAATCAATTTTTTAAATATGGCACTATTATTAGAAAACCTTTGAT  200
      |||||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  ATATTTAATCAA-TTTTTAAATATGGCACTATTATTAG-AAACCTTTGAT  185

seq1  AAGAGCCTTTACAG-TTTTCAAATGATCTGCTATTCCCAGTGATTCTATA  249
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAGAGCCTTTACAGTTTTTCAAATGATCTGCTATTCCCAGTGATTCTATA  235

seq1  CATGGGCTTATTAAACTCCTTTGGGATATTTCAATTAGCTGCCGCAGAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCTTATTAAACTCCTTTGGGATATTTCAATTAGCTGCCGCAGAGA  285

seq1  CCCGGGGTGGCAGAGACCCAGCGGGTTCTGACTTGAACACAGAAACCCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGGTGGCAGAGACCCAGCGGGTTCTGACTTGAACACAGAAACCCTC  335

seq1  AGTACAGCCATAAAGGCTGAGTTCCTTAGACGGCACCTCCACCTCTGTAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGCCATAAAGGCTGAGTTCCTTAGACGGCACCTCCACCTCTGTAC  385

seq1  CCCGTAAAACATCTTTTTTTTTTAAGTGAAAATTTCCAGTCCAAAAATCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTAAAACATCTTTTTTTTTTAAGTGAAAATTTCCAGTCCAAAAATCT  435

seq1  CCAAATAGAACAAATTGAACGTTCTTCACGGTTTTTACACAACATCTCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAGAACAAATTGAACGTTCTTCACGGTTTTTACACAACATCTCTT  485

seq1  TATGGATCTAAATTTAAATCCTCGAGAGCCGGGGCATTTTAAGCCTGCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATCTAAATTTAAATCCTCGAGAGCCGGGGCATTTTAAGCCTGCTC  535

seq1  TTTAACCACCGCACAGCACTAAAGGTGCACTGCCGCTCTTTTGATTAGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCACCGCACAGCACTAAAGGTGCACTGCCGCTCTTTTGATTAGCA  585

seq1  GAGAAACCTCTGAACTAGAAGCCATGCTGAGCAGAGGTGGGTTTCATTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCTCTGAACTAGAAGCCATGCTGAGCAGAGGTGGGTTTCATTTT  635

seq1  TTTCCCCCCGAACTAGAACAAACCCCCCCCCTTTTTTTTTTTTTGCCATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCCCGAACTAGAACAAACCCCCCCCCTTTTTTTTTTTTTGCCATG  685

seq1  GGATCTTGGTTAGCTGAACCTGAAGCAGAACCGTAATGAAAATTAAATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTGGTTAGCTGAACCTGAAGCAGAACCGTAATGAAAATTAAATTT  735

seq1  TCAAAAATGAATAAGGGTTTGATTGAAAGCTGACTCGTTCCCACGTAAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATGAATAAGGGTTTGATTGAAAGCTGACTCGTTCCCACGTAAAG  785

seq1  TGACCTGACTCACCCCAGGCCTGCTGCCTCTCCTCCGTAGCGACCGTGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGACTCACCCCAGGCCTGCTGCCTCTCCTCCGTAGCGACCGTGAG  835

seq1  CCTGCCTGCTTGCCTGCCAGCTAGTCGGGGCTGAAACAGATCCACAGAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTGCTTGCCTGCCAGCTAGTCGGGGCTGAAACAGATCCACAGAAT  885

seq1  GGAGTCAAAGCCTTACCCCAGCACATGGTATTTTGGCTAACAGTGCACAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAAAGCCTTACCCCAGCACATGGTATTTTGGCTAACAGTGCACAA  935

seq1  ATCCATGACTAGGGCTATAAAGGACCGAGCTGGTGCCCTCGAGTCTGTAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGACTAGGGCTATAAAGGACCGAGCTGGTGCCCTCGAGTCTGTAG  985

seq1  ACGCACCTGTACTAGTCACCTCCCACTGAGTCTGGGAGCCATGGGTTATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCACCTGTACTAGTCACCTCCCACTGAGTCTGGGAGCCATGGGTTATA  1035

seq1  GCATTTTCCGGGATGAAGTGACTCAAATAGAACCAAGCTGAAAACTAAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTCCGGGATGAAGTGACTCAAATAGAACCAAGCTGAAAACTAAAT  1085

seq1  TAGAATTC  1107
      ||||||||
seq2  TAGAATTC  1093

seq1: chr9_69058073_69058484
seq2: B6Ng01-270H01.g_66_476

seq1  GAATTCTTTTGTGAATATCCTTTAAGTATCATGCATAGCTGCCTTCCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGTGAATATCCTTTAAGTATCATGCATAGCTGCCTTCCCTG  50

seq1  GTTCTGTTTATAACTTTTTCTTGAACCAAGAAAACAAGAGGAACCAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTTTATAACTTTTTCTTGAACCAAGAAAACAAGAGGAACCAAATT  100

seq1  ATCCCCTGCAGGATCAATTCCTTGAGTGGAAACCTTGCTTATAAATGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTGCAGGATCAATTCCTTGAGTGGAAACCTTGCTTATAAATGAGA  150

seq1  GAATGAGACGTGACCCAATAAAAGAATCTATTTTAATTTTAATTTATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGACGTGACCCAATAAAAGAATCTATTTTAATTTTAATTTATTTC  200

seq1  CTGGTGGCCTTTTATGCCTCCTTAGGCGATGACCTAACCAATTCTTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGCCTTTTATGCCTCCTTAGGCGATGACCTAACCAATTCTTTCTT  250

seq1  AACACTGATTTTTTTTTTCTTTCCAAGGTCAAAAAGCACTTTGTAGTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGATTTTTTTTTTCTTTCCAAGGTCAAAAAGCACTTTGTAGTTAT  300

seq1  TGTAAGAAGAGAATAAATGGGTTTTTTTTTGTTGTTGTTGTTTGTTTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAAGAGAATAAATGGGTTTTTTTTTGTTGTTGTTGTTTGTTTTTG  350

seq1  GTTTTTTGGGTTTTAGTGTGTTTTGTTTTGTTTTGTTTTGTTTTTTGCCT  400
      ||||||||||||||||  |||||||||  |    ||||||||   | || 
seq2  GTTTTTTGGGTTTTAGAATGTTTTGTTAAGAAAAGTTTTGTTGACT-CCC  399

seq1  ACCACATAAAGC  412
      ||||||||||||
seq2  ACCACATAAAGC  411