BAC Information

Click to search

BAC

Clone NameB6Ng01-270P08
Chromosome9 (Build37)
Map Location 29,837,375 - 29,895,225
singlet/doubletdoublet
Overlap genenone
Upstream geneHnt, LOC625222
Downstream geneSnx19, LOC666478, Adamts15, Adamts8, Zbtb44, BC038156
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270P08.bB6Ng01-270P08.g
ACCGA073165GA073166
length1,1231,110
definitionB6Ng01-270P08.b B6Ng01-270P08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,837,375 - 29,838,501)(29,894,112 - 29,895,225)
sequence
gaattccttggcttgccccagccagcagtggaggtcaccttgcccaaggc
tggcttctgagtgtcagacaaacagaggccatagcagagctaaggagcca
ccgtcctcagcagggatgtgaacccaggaaaccagagggtgtgcttgttt
gggggagaaaaccgatgagagacactccggcagaagtgagcaggagggat
gaattaatgaaaagcacagtcatggcaaggtggactgctagtctatgaac
acagctggatggctgggttgtgggctctcctcctcagcctggcccagatt
gttgtagcaaagggaaactgtactgtgtgtttctctcttcttcatgccct
cccagctccatggcatctggttcatgcttccttcaacagacaattaccca
gatttcactacttttccttggggccctttgacctcttcagttcccactgt
ggctcggccctcctccactgttgtcttctgttcaattccctcacaacacg
ccccgcccattctcttcttttctgcttccttttcctgtcctgaggccagg
cccagagcctgtcacccatttatcaatgcattggaactgtagctcaggta
ttgatctgtgtttgttggtttttttcctgtaaactcgggctgtaaaggtt
tcattagcctgcctcacagtcattacatcaagtaataggaagcatccatc
ttcctcaggcttcacgcctgcgcccaatggagatcagtctggagagcgtt
aatcaagctatgaaaatcattggcagctcattcttttatgatgaaaaagc
tggtttgcagcctcactgggtagcagaagcctgacaccttagatacctac
agcaattatggactgtgtggttccctgcttaggaagtctattctttgcct
aatgcctgtatgcaaatctcattctgtgctctaatgtgattctctgactt
gtgtgcagtaagaaaaaggtatgggagagggctgggcttctggcagaatt
gtgggcaaagggagagttgtcagttcctttcactgatgcttgccaaggta
cgctgtacccagtgcaagtttccaccaatgcattgatatagaaaaaatgg
ataatatcacttaacttacctct

gaattcagtgagctcagtagtaagattcaggattgtgctttttcctgccc
attagctgccgtgttggagctgggaagtggttggctttcccaagagagac
tgacttaacatgaatgacattctcatccgttcatgctgcccctgacgtct
tgatcttcctctcctgcatctgctcctgcaaacgtattatgagaagaaat
gtgcttccttctaaacaaaagcaccaggaaacgactgccattcgcccaga
gatgatcacatttcaaaagagaccaagttttgaacgagtagtccatactg
taactgcctcctttctgtttgtcctgagttcccccagaagcccaggcata
tgctaatttgtactgttagctgcagcaattggtttccaaggacagaaagg
taacccacctgcttttcacgtcccagagctatgcaatcaggtagaaattc
cagtggatctctacatgcaatatttaagatttgaattgtgttgctgttaa
cttgcccactgcctgcaatcgtggccagcaccgatgcccttgagtggcct
ggaaagacagcaccgagaagacaccaaccgtgacggtggttgtcactgag
ccccttctgggccacttggccaaattaaaggactcatcatccttgtcttc
aatcctggaggctgctgagctcagctaagaggccctgggatcctgtagaa
gaggctgacagctttcttgatctgctgggaagcccaggagagacacatgt
ctagttaataatagaaccagctacttgacaaggctcttttaatttattag
agagttgcttcagatagcagttggaactaagagaggaaaaaaaaagtgtg
agtttgggggatttgcatttttgttttcttttgctttttgcttagattca
agctccccaaaatagctcccatcatgacatgtttgtttctttgagactct
gttgactggtgtccaataagggaaaaaatattcagcttgtctaatccccc
tccaactcactgactcccttttcgccaagttctggggatgcgaaattaac
cttactcagctgaggagtctgagaagaagcccaatgggccatcatgtgtt
gaccatgcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_29837375_29838501
seq2: B6Ng01-270P08.b_47_1169

seq1  GAATTCCTTGGCTTGCCCCAGCCAGCAGTGGAGGTCACCTTGCCCAAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGCTTGCCCCAGCCAGCAGTGGAGGTCACCTTGCCCAAGGC  50

seq1  TGGCTTCTGAGTGTCAGACAAACAGAGGCCATAGCAGAGCTAAGGAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTGAGTGTCAGACAAACAGAGGCCATAGCAGAGCTAAGGAGCCA  100

seq1  CCGTCCTCAGCAGGGATGTGAACCCAGGAAACCAGAGGGTGTGCTTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCCTCAGCAGGGATGTGAACCCAGGAAACCAGAGGGTGTGCTTGTTT  150

seq1  GGGGGAGAAAACCGATGAGAGACACTCCGGCAGAAGTGAGCAGGAGGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGAAAACCGATGAGAGACACTCCGGCAGAAGTGAGCAGGAGGGAT  200

seq1  GAATTAATGAAAAGCACAGTCATGGCAAGGTGGACTGCTAGTCTATGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAATGAAAAGCACAGTCATGGCAAGGTGGACTGCTAGTCTATGAAC  250

seq1  ACAGCTGGATGGCTGGGTTGTGGGCTCTCCTCCTCAGCCTGGCCCAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGGATGGCTGGGTTGTGGGCTCTCCTCCTCAGCCTGGCCCAGATT  300

seq1  GTTGTAGCAAAGGGAAACTGTACTGTGTGTTTCTCTCTTCTTCATGCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAGCAAAGGGAAACTGTACTGTGTGTTTCTCTCTTCTTCATGCCCT  350

seq1  CCCAGCTCCATGGCATCTGGTTCATGCTTCCTTCAACAGACAATTACCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTCCATGGCATCTGGTTCATGCTTCCTTCAACAGACAATTACCCA  400

seq1  GATTTCACTACTTTTCCTTGGGGCCCTTTGACCTCTTCAGTTCCCACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCACTACTTTTCCTTGGGGCCCTTTGACCTCTTCAGTTCCCACTGT  450

seq1  GGCTCGGCCCTCCTCCACTGTTGTCTTCTGTTCAATTCCCTCACAACACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGGCCCTCCTCCACTGTTGTCTTCTGTTCAATTCCCTCACAACACG  500

seq1  CCCCGCCCATTCTCTTCTTTTCTGCTTCCTTTTCCTGTCCTGAGGCCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCCCATTCTCTTCTTTTCTGCTTCCTTTTCCTGTCCTGAGGCCAGG  550

seq1  CCCAGAGCCTGTCACCCATTTATCAATGCATTGGAACTGTAGCTCAGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGCCTGTCACCCATTTATCAATGCATTGGAACTGTAGCTCAGGTA  600

seq1  TTGATCTGTGTTTGTTGGTTTTTTTCCTGTAAACTCGGGCTGTAAAGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTGTGTTTGTTGGTTTTTTTCCTGTAAACTCGGGCTGTAAAGGTT  650

seq1  TCATTAGCCTGCCTCACAGTCATTACATCAAGTAATAGGAAGCATCCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGCCTGCCTCACAGTCATTACATCAAGTAATAGGAAGCATCCATC  700

seq1  TTCCTCAGGCTTCACGCCTGCGCCCAATGGAGATCAGTCTGGAGAGCGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAGGCTTCACGCCTGCGCCCAATGGAGATCAGTCTGGAGAGCGTT  750

seq1  AATCAAGCTATGAAAATCATTGGCAGCTCATTCTTTTATGATGAAAAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGCTATGAAAATCATTGGCAGCTCATTCTTTTATGATGAAAAAGC  800

seq1  TGGTTTGCAGCCTCACTGGGTAGCAGAAGCCTGACACCTTAGATACCTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGCAGCCTCACTGGGTAGCAGAAGCCTGACACCTTAGATACCTAC  850

seq1  AGCAATTATGGACTGTGTGGTTCCCTGCTTAGGAAGTCTATTCTTTGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTATGGACTGTGTGGTTCCCTGCTTAGGAAGTCTATTCTTTGCCT  900

seq1  AATGCCTGTATGCAAATCTCATTCTGTGCTCTAATGTGATTCTCTGACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTGTATGCAAATCTCATTCTGTGCTCTAATGTGATTCTCTGACTT  950

seq1  GTGTGCAGTAAGAAAAAGGTAT-GGAGAGGGCTGGGCTTCTGGCAGAATT  999
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTGTGCAGTAAGAAAAAGGTATGGGAGAGGGCTGGGCTTCTGGCAGAATT  1000

seq1  GTGGGCAAAAGGGAGAGTTGTCAGTTCCTTTCACTGATGCTTGCCAAGGT  1049
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGC-AAAGGGAGAGTTGTCAGTTCCTTTCACTGATGCTTGCCAAGGT  1049

seq1  AAGGGCTGTACCCAGGTGCCAAGGTTCCACCAATGCAGTGTGATATAG-A  1098
      |   |||||||||| ||| |||| |||||||||||||   |||||||| |
seq2  A--CGCTGTACCCA-GTG-CAAGTTTCCACCAATGCA--TTGATATAGAA  1093

seq1  AAAATGGGT-ATATCAC-TAACTTACTCTCT  1127
      ||||||| | ||||||| |||||||| ||||
seq2  AAAATGGATAATATCACTTAACTTAC-CTCT  1123


seq1: chr9_29894112_29895225
seq2: B6Ng01-270P08.g_66_1175 (reverse)

seq1  GTGCATGCTCAACACCAATGAT-GCCCATTTGGGGCTTC-TCTCAAGACT  48
      ||||||| |||||||  ||||| |||||||  ||||||| |||| |||||
seq2  GTGCATGGTCAACAC--ATGATGGCCCATT--GGGCTTCTTCTC-AGACT  45

seq1  CCCTCCAGCTGAGTAAGGGTAATTTCCGCAATCCCCAGAACTGGGCG-AA  97
      ||   ||||||||||||| |||||| ||| |||||||||||| |||| ||
seq2  CC--TCAGCTGAGTAAGGTTAATTT-CGC-ATCCCCAGAACTTGGCGAAA  91

seq1  AGGGAGTCAGTGAG-TGGAGGGGGA-TAGACAAGCTGAATA-TTTTTCCC  144
      |||||||||||||| |||||||||| ||||||||||||||| ||||||||
seq2  AGGGAGTCAGTGAGTTGGAGGGGGATTAGACAAGCTGAATATTTTTTCCC  141

seq1  TTATTGGACACCAGTCAACAGAGTCTCAAAGAAACAAACATGTCATGATG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGACACCAGTCAACAGAGTCTCAAAGAAACAAACATGTCATGATG  191

seq1  GGAGCTATTTTGGGGAGCTTGAATCTAAGCAAAAAGCAAAAGAAAACAAA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTATTTTGGGGAGCTTGAATCTAAGCAAAAAGCAAAAGAAAACAAA  241

seq1  AATGCAAATCCCCCAAACTCACACTTTTTTTTTCCTCTCTTAGTTCCAAC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AATGCAAATCCCCCAAACTCACACTTTTTTTTTCCTCTCTTAGTTCCAA-  290

seq1  CTGCTATCTGAAGCAACTCTCTAATAAATTAAAAGAGCCTTGTCAAGTAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATCTGAAGCAACTCTCTAATAAATTAAAAGAGCCTTGTCAAGTAG  340

seq1  CTGGTTCTATTATTAACTAGACATGTGTCTCTCCTGGGCTTCCCAGCAGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCTATTATTAACTAGACATGTGTCTCTCCTGGGCTTCCCAGCAGA  390

seq1  TCAAGAAAGCTGTCAGCCTCTTCTACAGGATCCCAGGGCCTCTTAGCTGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAAGCTGTCAGCCTCTTCTACAGGATCCCAGGGCCTCTTAGCTGA  440

seq1  GCTCAGCAGCCTCCAGGATTGAAGACAAGGATGATGAGTCCTTTAATTTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCAGCCTCCAGGATTGAAGACAAGGATGATGAGTCCTTTAATTTG  490

seq1  GCCAAGTGGCCCAGAAGGGGCTCAGTGACAACCACCGTCACGGTTGGTGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTGGCCCAGAAGGGGCTCAGTGACAACCACCGTCACGGTTGGTGT  540

seq1  CTTCTCGGTGCTGTCTTTCCAGGCCACTCAAGGGCATCGGTGCTGGCCAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCGGTGCTGTCTTTCCAGGCCACTCAAGGGCATCGGTGCTGGCCAC  590

seq1  GATTGCAGGCAGTGGGCAAGTTAACAGCAACACAATTCAAATCTTAAATA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCAGGCAGTGGGCAAGTTAACAGCAACACAATTCAAATCTTAAATA  640

seq1  TTGCATGTAGAGATCCACTGGAATTTCTACCTGATTGCATAGCTCTGGGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGTAGAGATCCACTGGAATTTCTACCTGATTGCATAGCTCTGGGA  690

seq1  CGTGAAAAGCAGGTGGGTTACCTTTCTGTCCTTGGAAACCAATTGCTGCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAAAAGCAGGTGGGTTACCTTTCTGTCCTTGGAAACCAATTGCTGCA  740

seq1  GCTAACAGTACAAATTAGCATATGCCTGGGCTTCTGGGGGAACTCAGGAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACAGTACAAATTAGCATATGCCTGGGCTTCTGGGGGAACTCAGGAC  790

seq1  AAACAGAAAGGAGGCAGTTACAGTATGGACTACTCGTTCAAAACTTGGTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAAGGAGGCAGTTACAGTATGGACTACTCGTTCAAAACTTGGTC  840

seq1  TCTTTTGAAATGTGATCATCTCTGGGCGAATGGCAGTCGTTTCCTGGTGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGAAATGTGATCATCTCTGGGCGAATGGCAGTCGTTTCCTGGTGC  890

seq1  TTTTGTTTAGAAGGAAGCACATTTCTTCTCATAATACGTTTGCAGGAGCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTAGAAGGAAGCACATTTCTTCTCATAATACGTTTGCAGGAGCA  940

seq1  GATGCAGGAGAGGAAGATCAAGACGTCAGGGGCAGCATGAACGGATGAGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGGAGAGGAAGATCAAGACGTCAGGGGCAGCATGAACGGATGAGA  990

seq1  ATGTCATTCATGTTAAGTCAGTCTCTCTTGGGAAAGCCAACCACTTCCCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATTCATGTTAAGTCAGTCTCTCTTGGGAAAGCCAACCACTTCCCA  1040

seq1  GCTCCAACACGGCAGCTAATGGGCAGGAAAAAGCACAATCCTGAATCTTA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAACACGGCAGCTAATGGGCAGGAAAAAGCACAATCCTGAATCTTA  1090

seq1  CTACTGAGCTCACTGAATTC  1114
      ||||||||||||||||||||
seq2  CTACTGAGCTCACTGAATTC  1110


| Home | SequenceCutter | Blast | Download |