BAC Information

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BAC

Clone NameB6Ng01-278M17
Chromosome9 (Build37)
Map Location 14,789,068 - 14,961,505
singlet/doubletdoublet
Overlap genePanx1, Hephl1
Upstream geneSesn3, Endod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik, Amotl1, EG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4
Downstream gene2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375, LOC100039955, BC017612, Ccdc67, LOC665461, LOC330891, Slc36a4, Mtnr1b, Fat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278M17.bB6Ng01-278M17.g
ACCGA078942GA078943
length1,121967
definitionB6Ng01-278M17.b B6Ng01-278M17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,960,381 - 14,961,505)(14,789,068 - 14,790,011)
sequence
gaattctcatgaaggaagattatttgctctccttacaataacatgactta
cttattttatccttttggctggcctcaagatttgctatatagccagtgag
aaccatgaacttacgattcttctgccaccacgtctcaaaagttggtggta
gtcacagtgcctggctcgactcatttattttgtaaattggattttaagac
tccaggagcctctcagaaaagagttgaggtgcttcttgtaagcacattga
aattttatagtttttaatagaaatttagtcttttctatttcatttactgt
taagtttctatcttccagtgcatactcttttccttattgttcagtgccac
atgtctcatttgcattcaagtaatttataaatgataggtaagcattaatt
ccatgcttcattaattctccttggcatggagcacaggcttgcaaaaccca
tagaaagctgtggtggcttgaatatacttggcccataggaagtagcacta
ttagaaggtgtggccttgttggaggaagtgtgccactgtgctggtgggca
atgagacttccttcgaactcgtgggagtcagtcttctctttagctgcctt
tggaacaaaatgtagaactctcagcttttctagcaccatgcctgcctgga
tgctgccatgcttcctcccatagtgataatgggctgaatctctgaacctg
taagccaaccccaattaaatgtcctttataagagttgccttggtcatggt
gtctcttcacagcaatgaaaccttaactaagacaaaggctttccaaacac
ttactttaaaaaatgttaattatatttttactcatttatttaccatatgc
atacatgtgtgcatacactgtgtggaggtcagaagacaatttgcaagaat
cagctctctacttctgctatgtgggtctggggattgtacttgggtcacca
ggtttttaggcttgggtgacaggcaccttacctactgagccattccttag
ccccattttctgatctattagtgaatggattagtgaatgggcacactacc
acactattaaaacattctttttctcctcctgcccccactttcctcttgtt
gaccacaccccctcctcatct
gaattccctcagaagatggaacactgacattctataaacttcagacacca
ttctggaaacattgcaggggtttcctgaagcagcctcgagaaagcacttg
caattaaagtaaaaggaccttcagaacagagagccaaggggccaggtctg
acaactcagttgaaaagttacagtggtcatgaggtcatgtttggaatgat
ggatggctttgtttctccctttgacatttaaacattgctgggctattttt
atattcaaagagaaagaagagggaagtaaatataagttcctggtgtgact
tcggagctgttaccattcctgggctggctttgtctatatggggaagggag
atctgcctcctttcctagcttgccattttaaaaggctgcctctccaggcc
actgtccagtggatgctggggctgaatacttgattttgaccactgctgga
ccatgaaaggcagtctgtgttctggtcgagcgcggcttactccagggaca
tagtagaaaattctacaagagatggaaccataaacttcactcccagacac
aggcacctgacaccatgagccctcagctccatcattctgtggccatcagt
cacataggctgtctggactccacccccatagttacctggcaacagctcgg
catgctcctccccacagttacctggcaacagcaaggtagcccagcccact
ataaaaggggctgcttcgcccctcctctcttatctctcttaagctcttgt
tctcttattctcacctccctcttttcttctccccctcccttctcctctct
ctccacgtggccatggcggccctctacttctctacctttgtactggctag
ttttgtgtcaacttgacacagctggagttatcacagagaaaggatcttca
gttgagaaatgcctccatgagatccaactgtaagcattttctcattagtg
atcaaggggataggccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_14960381_14961505
seq2: B6Ng01-278M17.b_45_1165 (reverse)

seq1  AGATGAGGAGGGG--GTGGTC-ACAGAGGGAAGGTGGGGGCAGGGAGGAG  47
      |||||||||||||  |||||| |||   |||| ||||||||| |||||||
seq2  AGATGAGGAGGGGGTGTGGTCAACAAGAGGAAAGTGGGGGCA-GGAGGAG  49

seq1  --AAAGAATGTTATAATAGTTGTGGGTAGTGGTTGGCCCATTCACTAATC  95
        |||||||||| |||||| ||| |||||||    |||||||||||||||
seq2  AAAAAGAATGTTTTAATAG-TGT-GGTAGTG---TGCCCATTCACTAATC  94

seq1  CATTCACTAATTAGATCAGAAAATGGGGGCTAAGGAATGGCTCAGTAGGT  145
      |||||||||| ||||||||||||| |||||||||||||||||||||||||
seq2  CATTCACTAA-TAGATCAGAAAAT-GGGGCTAAGGAATGGCTCAGTAGGT  142

seq1  AAAGGTGCCTGTCACCCAAGCCTAAAAACCTGGTGACCCAAGTACAATCC  195
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAGGTGCCTGTCACCCAAGCCTAAAAACCTGGTGACCCAAGTACAATCC  191

seq1  CCAGACCCACATAGCAGAAGTAGAGAGCTGATTCTTGCAAATTGTCTTCT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCCACATAGCAGAAGTAGAGAGCTGATTCTTGCAAATTGTCTTCT  241

seq1  GACCTCCACACAGTGTATGCACACATGTATGCATATGGTAAATAAATGAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCCACACAGTGTATGCACACATGTATGCATATGGTAAATAAATGAG  291

seq1  TAAAAATATAATTAACATTTTTTAAAGTAAGTGTTTGGAAAGCCTTTGTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATATAATTAACATTTTTTAAAGTAAGTGTTTGGAAAGCCTTTGTC  341

seq1  TTAGTTAAGGTTTCATTGCTGTGAAGAGACACCATGACCAAGGCAACTCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTAAGGTTTCATTGCTGTGAAGAGACACCATGACCAAGGCAACTCT  391

seq1  TATAAAGGACATTTAATTGGGGTTGGCTTACAGGTTCAGAGATTCAGCCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGGACATTTAATTGGGGTTGGCTTACAGGTTCAGAGATTCAGCCC  441

seq1  ATTATCACTATGGGAGGAAGCATGGCAGCATCCAGGCAGGCATGGTGCTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCACTATGGGAGGAAGCATGGCAGCATCCAGGCAGGCATGGTGCTA  491

seq1  GAAAAGCTGAGAGTTCTACATTTTGTTCCAAAGGCAGCTAAAGAGAAGAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCTGAGAGTTCTACATTTTGTTCCAAAGGCAGCTAAAGAGAAGAC  541

seq1  TGACTCCCACGAGTTCGAAGGAAGTCTCATTGCCCACCAGCACAGTGGCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCCACGAGTTCGAAGGAAGTCTCATTGCCCACCAGCACAGTGGCA  591

seq1  CACTTCCTCCAACAAGGCCACACCTTCTAATAGTGCTACTTCCTATGGGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTCCAACAAGGCCACACCTTCTAATAGTGCTACTTCCTATGGGC  641

seq1  CAAGTATATTCAAGCCACCACAGCTTTCTATGGGTTTTGCAAGCCTGTGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATATTCAAGCCACCACAGCTTTCTATGGGTTTTGCAAGCCTGTGC  691

seq1  TCCATGCCAAGGAGAATTAATGAAGCATGGAATTAATGCTTACCTATCAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCCAAGGAGAATTAATGAAGCATGGAATTAATGCTTACCTATCAT  741

seq1  TTATAAATTACTTGAATGCAAATGAGACATGTGGCACTGAACAATAAGGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATTACTTGAATGCAAATGAGACATGTGGCACTGAACAATAAGGA  791

seq1  AAAGAGTATGCACTGGAAGATAGAAACTTAACAGTAAATGAAATAGAAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTATGCACTGGAAGATAGAAACTTAACAGTAAATGAAATAGAAAA  841

seq1  GACTAAATTTCTATTAAAAACTATAAAATTTCAATGTGCTTACAAGAAGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAATTTCTATTAAAAACTATAAAATTTCAATGTGCTTACAAGAAGC  891

seq1  ACCTCAACTCTTTTCTGAGAGGCTCCTGGAGTCTTAAAATCCAATTTACA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAACTCTTTTCTGAGAGGCTCCTGGAGTCTTAAAATCCAATTTACA  941

seq1  AAATAAATGAGTCGAGCCAGGCACTGTGACTACCACCAACTTTTGAGACG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATGAGTCGAGCCAGGCACTGTGACTACCACCAACTTTTGAGACG  991

seq1  TGGTGGCAGAAGAATCGTAAGTTCATGGTTCTCACTGGCTATATAGCAAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCAGAAGAATCGTAAGTTCATGGTTCTCACTGGCTATATAGCAAA  1041

seq1  TCTTGAGGCCAGCCAAAAGGATAAAATAAGTAAGTCATGTTATTGTAAGG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGGCCAGCCAAAAGGATAAAATAAGTAAGTCATGTTATTGTAAGG  1091

seq1  AGAGCAAATAATCTTCCTTCATGAGAATTC  1125
      ||||||||||||||||||||||||||||||
seq2  AGAGCAAATAATCTTCCTTCATGAGAATTC  1121

seq1: chr9_14789068_14790011
seq2: B6Ng01-278M17.g_68_1009

seq1  GAATTCCCTCAGAAGATGGAACACTGACATTCTATAAACTTCAGACACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCAGAAGATGGAACACTGACATTCTATAAACTTCAGACACCA  50

seq1  TTCTGGAAACATTGCAGGGGTTTCCTGAAGCAGCCTCGAGAAAGCACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAAACATTGCAGGGGTTTCCTGAAGCAGCCTCGAGAAAGCACTTG  100

seq1  CAATTAAAGTAAAAGGACCTTCAGAACAGAGAGCCAAGGGGCCAGGTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAAGTAAAAGGACCTTCAGAACAGAGAGCCAAGGGGCCAGGTCTG  150

seq1  ACAACTCAGTTGAAAAGTTACAGTGGTCATGAGGTCATGTTTGGAATGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCAGTTGAAAAGTTACAGTGGTCATGAGGTCATGTTTGGAATGAT  200

seq1  GGATGGCTTTGTTTCTCCCTTTGACATTTAAACATTGCTGGGCTATTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGCTTTGTTTCTCCCTTTGACATTTAAACATTGCTGGGCTATTTTT  250

seq1  ATATTCAAAGAGAAAGAAGAGGGAAGTAAATATAAGTTCCTGGTGTGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAAAGAGAAAGAAGAGGGAAGTAAATATAAGTTCCTGGTGTGACT  300

seq1  TCGGAGCTGTTACCATTCCTGGGCTGGCTTTGTCTATATGGGGAAGGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAGCTGTTACCATTCCTGGGCTGGCTTTGTCTATATGGGGAAGGGAG  350

seq1  ATCTGCCTCCTTTCCTAGCTTGCCATTTTAAAAGGCTGCCTCTCCAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCTCCTTTCCTAGCTTGCCATTTTAAAAGGCTGCCTCTCCAGGCC  400

seq1  ACTGTCCAGTGGATGCTGGGGCTGAATACTTGATTTTGACCACTGCTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCAGTGGATGCTGGGGCTGAATACTTGATTTTGACCACTGCTGGA  450

seq1  CCATGAAAGGCAGTCTGTGTTCTGGTCGAGCGCGGCTTACTCCAGGGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAAGGCAGTCTGTGTTCTGGTCGAGCGCGGCTTACTCCAGGGACA  500

seq1  TAGTAGAAAATTCTACAAGAGATGGAACCATAAACTTCACTCCCAGACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGAAAATTCTACAAGAGATGGAACCATAAACTTCACTCCCAGACAC  550

seq1  AGGCACCTGACACCATGAGCCCTCAGCTCCATCATTCTGTGGCCATCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACCTGACACCATGAGCCCTCAGCTCCATCATTCTGTGGCCATCAGT  600

seq1  CACATAGGCTGTCTGGACTCCACCCCCATAGTTACCTGGCAACAGCTCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGGCTGTCTGGACTCCACCCCCATAGTTACCTGGCAACAGCTCGG  650

seq1  CATGCTCCTCCCCACAGTTACCTGGCAACAGCAAGGTAGCCCAGCCCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCCTCCCCACAGTTACCTGGCAACAGCAAGGTAGCCCAGCCCACT  700

seq1  ATAAAAGGGGCTGCTTCGCCCCTCCTCTCTTATCTCTCTTAAGCTCTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGGGCTGCTTCGCCCCTCCTCTCTTATCTCTCTTAAGCTCTTGT  750

seq1  TCTCTTATTCTCACCTCCCTCTTTTCTTCTCCCCCTCCCTTCTCCTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTATTCTCACCTCCCTCTTTTCTTCTCCCCCTCCCTTCTCCTCTCT  800

seq1  CTCCACGTGGCCATGGCGGCCCTCTACTTCTCTACCTTTGTACTGGCTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACGTGGCCATGGCGGCCCTCTACTTCTCTACCTTTGTACTGGCTAG  850

seq1  TTTTGTGTCAACTTGACACAGCTGGAGTTATCACAGAGAAAGGATCTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGTCAACTTGACACAGCTGGAGTTATCACAGAGAAAGGATCTTCA  900

seq1  GTTGAGGAAATGCCTCCATGAGATCCAACTGTAAGGCATTTTCT  944
      ||||| |||||||||||||||||||||||||||| |||||||||
seq2  GTTGA-GAAATGCCTCCATGAGATCCAACTGTAA-GCATTTTCT  942