BAC Information

Click to search

BAC

Clone NameB6Ng01-283E22
Chromosome9 (Build37)
Map Location 28,359,272 - 28,537,769
singlet/doubletdoublet
Overlap geneOpcml
Upstream geneLOC666440, LOC100041202
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283E22.bB6Ng01-283E22.g
ACCGA082303GA082304
length1,1501,138
definitionB6Ng01-283E22.b B6Ng01-283E22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,359,272 - 28,360,440)(28,536,642 - 28,537,769)
sequence
gaattctacagtagctcttcagttataatcagaagaaaagagggcctaca
attaagggctaagaagcctgaatatttagtagttgaacacattataaaaa
gatagatacatttttcttggttagttgtgaatagtcacataataaaaaat
aataacggtgtatatacagcatgcaaagtccttgtgctctccaagatcga
tgttaacaggggcttatctcaccttcacaatgattccattcaaaagacca
gtcaaggtgtactggccccactttacaagcatggcaaaggaagcaggcta
tatgatttgctatcatttagcaaacactaaattacttgtagaaatattca
taatgcaatttttgactcattataaaatagattctgtcatatctacttat
tatttaggtagatatttttttgtttatgattaagtaatatgggctaagaa
tttgttcacaggcatcaagtcaaaggatggactttttatcaataatatgc
acactgaattttggatgtgacttgtttattacacagtgggagttagagta
ttcaataagaatttatttcctgaatcaggtccagctgctgaccactcaaa
aaccaatacatgggagaaatcagtggggacgaaatcaattttatttaatg
gctattcctaaagataaaggtctttgccctccaacaattcttttagggaa
ttctggggggaaaaaaacaggcttctgttagagggaaagaggcatgggag
caatgagcaagaaggctgtgtactaaagggaatcttcctcctatccagta
ccctccccccttcatctctagttaaaatgctacattccaatggaccttga
cctcctagggcctactatcttcagataaatatattgtttttctgcaagtt
aaaccccacagtaatttgcgttctttgtgttgacacaagtggggaaatat
gatgagagagttgcacaatctgatgtcatttgtaagcccagactcacgtg
atctataaatagaagctgttaaaggtaatatgtaatcattagtgtggctt
ctattagattagatgctgagcaaacgaaggttattaaccttgccagagga
cactcaagtattacatctcagttaccagcgattgatgttacttcagtcta


gaattctgacgccagggtgttagccctgggtttgctgatgatgctgtgca
atccagccatcttgcagtagaagagaacaggtagaaatgatcataatatt
ctttacaactacaaattgtagacgtaatcaatgataatgcacaaacagag
cccctggggaggaaagtggctttgtctatgggtatgtttctacaaaccag
cattcccaagactttggtgatcaactggtaaggaggtggttataggcagt
ggttctcaacttgtaggtcccgacctcttgccggggtgggggtggctact
gaataaacctttcccagggctcacctgaaaccatcagaaaatagagagat
ttacaatatgattcataaaagtagcaaaattacaactatgaagtagcatc
aaaaataattttatggctgagacatcaccataacgtgctgaactttatta
aaacgtctcagcattagaaaggttgagagagactgttctaaaggaatgta
caaggtcattctttgtgtcaatcatctttgattctttctgattcattccg
tatctccatcttgtaaggaattctagcctatgtggaggtttctcatcatt
attactgccacagctgcgatccaaacttttagttctcaattcaaatcaaa
ttctcaataacacaatgggcttcaatcttctccaactttctcctatgcta
ctaaaattcaaatcttcatagtagactagagtcatgcttctaatacaata
acaactaagtgacttggtggctccttcctgcatgcggaataaacagcaaa
ccattcctgtgcatgacagagaagatcctcccttgatctcattgagaatt
gacatttaaaggctgaatacattactcaatatttccatgtctatgaaaaa
aaaaataaattctgaaaaccagaaagtgtgaagctttgatctcattgtcc
agctttctgggttcttgattattccttgcatgtcctagatgaactgctta
caagcctattcatatgcagacttaattttaacccttgtagccttctgttt
ttctgctaaacaccaaaaaaaataacccattaaggatataattccagaat
tcaagctccaggccttatgttagcatgccacactgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_28359272_28360440
seq2: B6Ng01-283E22.b_44_1193

seq1  GAATTCTACAGTAGCTCTTCAGTTATAATCAGAAGAAAAGAGGGCCTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAGTAGCTCTTCAGTTATAATCAGAAGAAAAGAGGGCCTACA  50

seq1  ATTAAGGGCTAAGAAGCCTGAATATTTAGTAGTTGAACACATTATAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGGCTAAGAAGCCTGAATATTTAGTAGTTGAACACATTATAAAAA  100

seq1  GATAGATACATTTTTCTTGGTTAGTTGTGAATAGTCACATAATAAAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATACATTTTTCTTGGTTAGTTGTGAATAGTCACATAATAAAAAAT  150

seq1  AATAACGGTGTATATACAGCATGCAAAGTCCTTGTGCTCTCCAAGATCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACGGTGTATATACAGCATGCAAAGTCCTTGTGCTCTCCAAGATCGA  200

seq1  TGTTAACAGGGGCTTATCTCACCTTCACAATGATTCCATTCAAAAGACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACAGGGGCTTATCTCACCTTCACAATGATTCCATTCAAAAGACCA  250

seq1  GTCAAGGTGTACTGGCCCCACTTTACAAGCATGGCAAAGGAAGCAGGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGTGTACTGGCCCCACTTTACAAGCATGGCAAAGGAAGCAGGCTA  300

seq1  TATGATTTGCTATCATTTAGCAAACACTAAATTACTTGTAGAAATATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTTGCTATCATTTAGCAAACACTAAATTACTTGTAGAAATATTCA  350

seq1  TAATGCAATTTTTGACTCATTATAAAATAGATTCTGTCATATCTACTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAATTTTTGACTCATTATAAAATAGATTCTGTCATATCTACTTAT  400

seq1  TATTTAGGTAGATATTTTTTTGTTTATGATTAAGTAATATGGGCTAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGGTAGATATTTTTTTGTTTATGATTAAGTAATATGGGCTAAGAA  450

seq1  TTTGTTCACAGGCATCAAGTCAAAGGATGGACTTTTTATCAATAATATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCACAGGCATCAAGTCAAAGGATGGACTTTTTATCAATAATATGC  500

seq1  ACACTGAATTTTGGATGTGACTTGTTTATTACACAGTGGGAGTTAGAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAATTTTGGATGTGACTTGTTTATTACACAGTGGGAGTTAGAGTA  550

seq1  TTCAATAAGAATTTATTTCCTGAATCAGGTCCAGCTGCTGACCACTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAAGAATTTATTTCCTGAATCAGGTCCAGCTGCTGACCACTCAAA  600

seq1  AACCAATACATGGGAGAAATCAGTGGGGACGAAATCAATTTTATTTAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATACATGGGAGAAATCAGTGGGGACGAAATCAATTTTATTTAATG  650

seq1  GCTATTCCTAAAGATAAAGGTCTTTGCCCTCCAACAATTCTTTTAGGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTCCTAAAGATAAAGGTCTTTGCCCTCCAACAATTCTTTTAGGGAA  700

seq1  TTCTGGGGGGAAAAAAACAGGCTTCTGTTAGAGGGAAAGAGGCATGGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGGGGAAAAAAACAGGCTTCTGTTAGAGGGAAAGAGGCATGGGAG  750

seq1  CAATGAGCAAGAAGGCTGTGTACTAAAGGGAATCTTCCTCCTATCCAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGCAAGAAGGCTGTGTACTAAAGGGAATCTTCCTCCTATCCAGTA  800

seq1  CCCTCCCCCCTTCATCTCTAGTTAAAATGCTACATTCCAATGGACCTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCCCTTCATCTCTAGTTAAAATGCTACATTCCAATGGACCTTGA  850

seq1  CCTCCTAGGGCCTACTATCTTCAGATAAATATATTGTTTTTCTGCAAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTAGGGCCTACTATCTTCAGATAAATATATTGTTTTTCTGCAAGTT  900

seq1  AAACCCCACAGTAATTTGCGTTCTTTGTGTTGACACAAGTGGGGAAATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCACAGTAATTTGCGTTCTTTGTGTTGACACAAGTGGGGAAATAT  950

seq1  GATGAGAGAGTTGCACAATCTGATGTCATTTGTAAGGCCCCAGACTCAGG  1000
      ||||||||||||||||||||||||||||||||||||  ||||||||||  
seq2  GATGAGAGAGTTGCACAATCTGATGTCATTTGTAAG--CCCAGACTCA-C  997

seq1  GTGATCTATAAATAGAAGCTGTTTAAAGGTTAATATGTTAATCATTTAGG  1050
      ||||||||||||||||||||| ||||||| ||||||| ||||||||   |
seq2  GTGATCTATAAATAGAAGCTG-TTAAAGG-TAATATG-TAATCATT--AG  1042

seq1  TGTGGCTTCCTATTAGAATTTAGAATGCTGAGCAAAAGGAGGGTAATTAA  1100
      |||||||| ||||||||  |||| ||||||||| ||| || ||| |||||
seq2  TGTGGCTT-CTATTAGA--TTAG-ATGCTGAGC-AAACGAAGGTTATTAA  1087

seq1  CCTTG-CAGAGGACAACTC-AGTATTAACATTCTCAGTTACCAGGGCAGA  1148
      ||||| |||||||| |||| |||||| ||| ||||||||||||| |    
seq2  CCTTGCCAGAGGAC-ACTCAAGTATT-ACA-TCTCAGTTACCAGCG----  1130

seq1  TTTGAGTGTTACTTCAGTCTA  1169
       |||| |||||||||||||||
seq2  ATTGA-TGTTACTTCAGTCTA  1150


seq1: chr9_28536642_28537769
seq2: B6Ng01-283E22.g_66_1203 (reverse)

seq1  ACACAGTGTGCAATGCT-ACAT-AGGCCTGGGAGCTTGAA-TCTTGA--T  45
      ||||||||||  ||||| |||| |||||| |||||||||| ||| ||  |
seq2  ACACAGTGTGGCATGCTAACATAAGGCCT-GGAGCTTGAATTCTGGAATT  49

seq1  ATATCC-TAATGGGTATTTTTTTTTTGGTTGTTTAGCAGAAAAACAGAAA  94
      |||||| |||||||| | |||||||||| |||||||||||||||||| ||
seq2  ATATCCTTAATGGGT-TATTTTTTTTGG-TGTTTAGCAGAAAAACAG-AA  96

seq1  GGCTACAAGGG-TAAAATTAAGTCTGCATATGAATA-GCTTGTAAGCAG-  141
      ||||||||||| |||||||||||||||||||||||| |||||||||||| 
seq2  GGCTACAAGGGTTAAAATTAAGTCTGCATATGAATAGGCTTGTAAGCAGT  146

seq1  TCATCTAGGACATGC-AGGAATAATC-AGGACCCAG-AAGCTGGACAATG  188
      ||||||||||||||| |||||||||| || |||||| |||||||||||||
seq2  TCATCTAGGACATGCAAGGAATAATCAAGAACCCAGAAAGCTGGACAATG  196

seq1  AGATCAAAGCTTCACACTTTCTGGTTTTCAG-ATTTATTTTTTTTTTCAT  237
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGATCAAAGCTTCACACTTTCTGGTTTTCAGAATTTATTTTTTTTTTCAT  246

seq1  AGACATGGAAATATTGAGTAATGTATTCAGCC-TTAAATGTCAATTCTCA  286
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGACATGGAAATATTGAGTAATGTATTCAGCCTTTAAATGTCAATTCTCA  296

seq1  ATGAGATCAAGGGAGGATCTTCTCTGTCATGCACAGGAATGGTTTGCTGT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATCAAGGGAGGATCTTCTCTGTCATGCACAGGAATGGTTTGCTGT  346

seq1  TTATTCCGCATGCAGGAAGGAGCCACCAAGTCACTTAGTTGTTATTGTAT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCGCATGCAGGAAGGAGCCACCAAGTCACTTAGTTGTTATTGTAT  396

seq1  TAGAAGCATGACTCTAGTCTACTATGAAGATTTGAATTTTAGTAGCATAG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCATGACTCTAGTCTACTATGAAGATTTGAATTTTAGTAGCATAG  446

seq1  GAGAAAGTTGGAGAAGATTGAAGCCCATTGTGTTATTGAGAATTTGATTT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGTTGGAGAAGATTGAAGCCCATTGTGTTATTGAGAATTTGATTT  496

seq1  GAATTGAGAACTAAAAGTTTGGATCGCAGCTGTGGCAGTAATAATGATGA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAGAACTAAAAGTTTGGATCGCAGCTGTGGCAGTAATAATGATGA  546

seq1  GAAACCTCCACATAGGCTAGAATTCCTTACAAGATGGAGATACGGAATGA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTCCACATAGGCTAGAATTCCTTACAAGATGGAGATACGGAATGA  596

seq1  ATCAGAAAGAATCAAAGATGATTGACACAAAGAATGACCTTGTACATTCC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAAGAATCAAAGATGATTGACACAAAGAATGACCTTGTACATTCC  646

seq1  TTTAGAACAGTCTCTCTCAACCTTTCTAATGCTGAGACGTTTTAATAAAG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAACAGTCTCTCTCAACCTTTCTAATGCTGAGACGTTTTAATAAAG  696

seq1  TTCAGCACGTTATGGTGATGTCTCAGCCATAAAATTATTTTTGATGCTAC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCACGTTATGGTGATGTCTCAGCCATAAAATTATTTTTGATGCTAC  746

seq1  TTCATAGTTGTAATTTTGCTACTTTTATGAATCATATTGTAAATCTCTCT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGTTGTAATTTTGCTACTTTTATGAATCATATTGTAAATCTCTCT  796

seq1  ATTTTCTGATGGTTTCAGGTGAGCCCTGGGAAAGGTTTATTCAGTAGCCA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGATGGTTTCAGGTGAGCCCTGGGAAAGGTTTATTCAGTAGCCA  846

seq1  CCCCCACCCCGGCAAGAGGTCGGGACCTACAAGTTGAGAACCACTGCCTA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCCGGCAAGAGGTCGGGACCTACAAGTTGAGAACCACTGCCTA  896

seq1  TAACCACCTCCTTACCAGTTGATCACCAAAGTCTTGGGAATGCTGGTTTG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACCTCCTTACCAGTTGATCACCAAAGTCTTGGGAATGCTGGTTTG  946

seq1  TAGAAACATACCCATAGACAAAGCCACTTTCCTCCCCAGGGGCTCTGTTT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACATACCCATAGACAAAGCCACTTTCCTCCCCAGGGGCTCTGTTT  996

seq1  GTGCATTATCATTGATTACGTCTACAATTTGTAGTTGTAAAGAATATTAT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTATCATTGATTACGTCTACAATTTGTAGTTGTAAAGAATATTAT  1046

seq1  GATCATTTCTACCTGTTCTCTTCTACTGCAAGATGGCTGGATTGCACAGC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATTTCTACCTGTTCTCTTCTACTGCAAGATGGCTGGATTGCACAGC  1096

seq1  ATCATCAGCAAACCCAGGGCTAACACCCTGGCGTCAGAATTC  1128
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAGCAAACCCAGGGCTAACACCCTGGCGTCAGAATTC  1138


| Home | SequenceCutter | Blast | Download |