BAC Information

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BAC

Clone NameB6Ng01-283N20
Chromosome9 (Build37)
Map Location 40,208,129 - 40,366,966
singlet/doubletdoublet
Overlap geneGramd1b, LOC270148
Upstream geneOlfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b
Downstream gene9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx, 4931429I11Rik, Crtam, 2810457I06Rik, LOC628495
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283N20.bB6Ng01-283N20.g
ACCGA082715GA082716
length1,1091,108
definitionB6Ng01-283N20.b B6Ng01-283N20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,208,129 - 40,209,209)(40,365,845 - 40,366,966)
sequence
gaattctctttggccaccagcactgacattgtctgctgaaggcctactgt
gtgcatggtatagcctgtgctgaggagagactcagcccagctcaacatcc
atcaaacatgagaaaccctgagcaaggaattgtccgtaaatggctacatg
gtgacaagcatctgtctccacttcccatgtgtgtctcgtgggtagtaggg
ggaggtgcagagacagacagacagacagagacagagcatcaagatcaagt
caaaatcaatctctgctccctacctactttgaaatccactcagcctctga
ctaccttctttttttctccttttctctcctcacgattttgtcccattttt
cctttctccaacgctaacctttgtttccacaccaaaggagaaaggtgccc
cctctcccaacggcttgcacaagtccctatgtccccgggagccattgcaa
aggctttgtactgaactctgggtcagcacttgaacctcttcctcccagcc
agcttcctcctctccgcttgtcacagaggccaaggttcagcgtggtctgc
aaggagctgttgcagcacagctctgccaaatgaggggcctgccttaagac
aagtgtcctatatctggatgatacacacatctccgtgtcaacacccagtc
ccagagaccgagcactcggaacccagcacctttctctcaggccctccaaa
ctctttcctgactgacgttccatggcagaaacaaacgctgccatctatct
ggctacgtatgaagagcagagggggccaagtcacctctttaggaatgaca
cagtgaggcacaaactttatctcccagtcccggacctcatcagctgtcca
cctcagctttttcccttcaggcctcctgcaacacatcttgtctctctcta
acactcatctcttctctgtgtgtcactcagcagggaggtgtcatggaaag
cccaagatcccaaactatttcccaccttcccgttgaagagactctaaggc
catcctcaacccttaaacttgtcccttaccactttacttggctcttcaga
aaggccagcttcttttctccagacagggagacacgggttagtagccaggg
tcctcttga
gaattctttcaaaccaaacacaaaactactgtgtggaccaagcaaagcac
atatactgtccattttctccctgtgagctcatccaccagccgggggcctt
ggattctggactccttcttctaagaatttgagtccagaggtcttgttggc
cctcactcgtagatcttatttatttctctattatcccttcttcacactga
aacaaggctgtggctactacaggatgacggcgcttggatcccacccagct
gtgtggacttggccaatttgcttcaatcattaggaatcatttgcttcacc
tctgtaaacaaggagtgtggagctagatggtttattaatttcccaccagc
actattattttatgacctagaattttaagacttcaagcactgggcataga
catacttgcttgtaatcttagttctagggagactgaggcagaggatagca
aggtcagggttaacctggtctacgtagttaggctctagctcaaaaccaaa
ctttaagagacaaagtaaattcatttccggctgggtgatcacgttctgtt
tcaactaagaaatggccttgaggaaagtataatgcttgtactggtagaga
ttgtgtagagagcaggaaaaacagaaatggaaaatttttaatataattat
catattttgaaaaattaccatattcttggcagcatgctaattttcttata
catattattccctccagttctcacaattctgaaatataaaaccttaccct
gatttcacagtagagaaatatttatagaaagactaaatttcttcttgaac
tccacccaatttgtttgtgacagaatcgcgatgccaacctagacatccca
ctcccaagcccagactctcaccgtgctgtggaggaaacagtctgaggaag
agagcgagcgggggcagcagccaactcctttgtaattgttacatttgtca
gtgcattttccacctcctgggtgtgtgctaggcaattatgaaaaacacac
cacaaatgacacaaggggcttgacccttggggagatatctactgataaaa
ctaactattgagattcactatagccgattgcttccaggaaatatacagat
ccagtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_40208129_40209209
seq2: B6Ng01-283N20.b_49_1157

seq1  GAATTCTCTTTGGCCACCAGCACTGACATTGTCTGCTGAAGGCCTACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTGGCCACCAGCACTGACATTGTCTGCTGAAGGCCTACTGT  50

seq1  GTGCATGGTATAGCCTGTGCTGAGGAGAGACTCAGCCCAGCTCAACATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGGTATAGCCTGTGCTGAGGAGAGACTCAGCCCAGCTCAACATCC  100

seq1  ATCAAACATGAGAAACCCTGAGCAAGGAATTGTCCGTAAATGGCTACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACATGAGAAACCCTGAGCAAGGAATTGTCCGTAAATGGCTACATG  150

seq1  GTGACAAGCATCTGTCTCCACTTCCCATGTGTGTCTCGTGGGTAGTAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAGCATCTGTCTCCACTTCCCATGTGTGTCTCGTGGGTAGTAGGG  200

seq1  GGAGGTGCAGAGACAGACAGACAGACAGAGACAGAGCATCAAGATCAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGCAGAGACAGACAGACAGACAGAGACAGAGCATCAAGATCAAGT  250

seq1  CAAAATCAATCTCTGCTCCCTACCTACTTTGAAATCCACTCAGCCTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCAATCTCTGCTCCCTACCTACTTTGAAATCCACTCAGCCTCTGA  300

seq1  CTACCTTCTTTTTTTCTCCTTTTCTCTCCTCACGATTTTGTCCCATTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTCTTTTTTTCTCCTTTTCTCTCCTCACGATTTTGTCCCATTTTT  350

seq1  CCTTTCTCCAACGCTAACCTTTGTTTCCACACCAAAGGAGAAAGGTGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCCAACGCTAACCTTTGTTTCCACACCAAAGGAGAAAGGTGCCC  400

seq1  CCTCTCCCAACGGCTTGCACAAGTCCCTATGTCCCCGGGAGCCATTGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCAACGGCTTGCACAAGTCCCTATGTCCCCGGGAGCCATTGCAA  450

seq1  AGGCTTTGTACTGAACTCTGGGTCAGCACTTGAACCTCTTCCTCCCAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTGTACTGAACTCTGGGTCAGCACTTGAACCTCTTCCTCCCAGCC  500

seq1  AGCTTCCTCCTCTCCGCTTGTCACAGAGGCCAAGGTTCAGCGTGGTCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCTCCTCTCCGCTTGTCACAGAGGCCAAGGTTCAGCGTGGTCTGC  550

seq1  AAGGAGCTGTTGCAGCACAGCTCTGCCAAATGAGGGGCCTGCCTTAAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCTGTTGCAGCACAGCTCTGCCAAATGAGGGGCCTGCCTTAAGAC  600

seq1  AAGTGTCCTATATCTGGATGATACACACATCTCCGTGTCAACACCCAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCCTATATCTGGATGATACACACATCTCCGTGTCAACACCCAGTC  650

seq1  CCAGAGACCGAGCACTCGGAACCCAGCACCTTTCTCTCAGGCCCTCCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGACCGAGCACTCGGAACCCAGCACCTTTCTCTCAGGCCCTCCAAA  700

seq1  CTCTTTCCTGACTGACGTTCCATGGCAGAAACAAACGCTGCCATCTATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCTGACTGACGTTCCATGGCAGAAACAAACGCTGCCATCTATCT  750

seq1  GGCTACGTATGAAGAGCAGAGGGGGCCAAGTCACCTC-TTAGGAATGACA  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGCTACGTATGAAGAGCAGAGGGGGCCAAGTCACCTCTTTAGGAATGACA  800

seq1  CAGTGAGGCACAAACTTTATCTCCCAGTCCC-GACCTCATCAGCTGTCCA  848
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAGTGAGGCACAAACTTTATCTCCCAGTCCCGGACCTCATCAGCTGTCCA  850

seq1  CCTCAGC-TTTTCCCTTCA-GCCTCCTGCAACACATC-TGTCTCTCTCTA  895
      ||||||| ||||||||||| ||||||||||||||||| ||||||||||||
seq2  CCTCAGCTTTTTCCCTTCAGGCCTCCTGCAACACATCTTGTCTCTCTCTA  900

seq1  ACACTCATCTC-TCTCTGTGTGTCACTCAGCAGGGAGGTGTCATGGAA--  942
      ||||||||||| ||||||||||||||||||||||||||||||||||||  
seq2  ACACTCATCTCTTCTCTGTGTGTCACTCAGCAGGGAGGTGTCATGGAAAG  950

seq1  GCCAAGAT-CCAAACTA-TTCCCACCT--CCG-TGAAGAGAC-CTAA-GC  985
       ||||||| |||||||| |||||||||  ||| ||||||||| |||| ||
seq2  CCCAAGATCCCAAACTATTTCCCACCTTCCCGTTGAAGAGACTCTAAGGC  1000

seq1  CAT-CTCAACCCT--AACCTG-CCCCTACCAC-TTACTTGGCTC-TCAGA  1029
      ||| |||||||||  ||| || ||| |||||| ||||||||||| |||||
seq2  CATCCTCAACCCTTAAACTTGTCCCTTACCACTTTACTTGGCTCTTCAGA  1050

seq1  AAGGCCAGCTTC--TTCCTCAGACA-GGAGACACGG--TAGTAGC--AGG  1072
      ||||||||||||  |||  |||||| ||||||||||  |||||||   ||
seq2  AAGGCCAGCTTCTTTTCTCCAGACAGGGAGACACGGGTTAGTAGCCAGGG  1100

seq1  TCCTCTTGA  1081
      |||||||||
seq2  TCCTCTTGA  1109

seq1: chr9_40365845_40366966
seq2: B6Ng01-283N20.g_66_1173 (reverse)

seq1  CACACTGGCTCTTGTATATCTCCTGGGAAGCAATCGGCTATGGTGATTTT  50
      |||||||| || ||||||| |||| |||||||||||||||| |||| | |
seq2  CACACTGGATC-TGTATATTTCCT-GGAAGCAATCGGCTATAGTGAATCT  48

seq1  TAAATATGTTTGGTTTTTTTTCCAGTAGATTATCTCCCCAA-GGTCAAGC  99
       |   ||  || ||||| |   ||||||| ||||||||||| ||||||||
seq2  CA---ATAGTTAGTTTTAT---CAGTAGA-TATCTCCCCAAGGGTCAAGC  91

seq1  CCCTTTGTGTTCATTTTGTTGTTGTTGTTTTTCAT-ATTGCCTAGCACAA  148
      ||| ||||| ||| ||||| ||   |||||||||| |||||||||||| |
seq2  CCC-TTGTG-TCA-TTTGTGGT--GTGTTTTTCATAATTGCCTAGCAC-A  135

seq1  CACCCAAGGAGTGGAAAATGCACTGACAAATGTAACAATTACAAAGGAGT  198
      |||||| |  ||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGGAGGTGGAAAATGCACTGACAAATGTAACAATTACAAAGGAGT  185

seq1  TGGCTGCTGCCCCCGCTCGCTCTCTTCCTCAGACTGTTTCCTCCACAGCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCTGCCCCCGCTCGCTCTCTTCCTCAGACTGTTTCCTCCACAGCA  235

seq1  CGGTGAGAGTCTGGGCTTTGGAAGTGGGATGTCTAGGTTGGCATCGCGAT  298
      |||||||||||||||| |||| ||||||||||||||||||||||||||||
seq2  CGGTGAGAGTCTGGGC-TTGGGAGTGGGATGTCTAGGTTGGCATCGCGAT  284

seq1  TCTGTCACAAACAAATTGGGTGGAGTTCAAGAAGAAATTTAGTCTTTCTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCACAAACAAATTGGGTGGAGTTCAAGAAGAAATTTAGTCTTTCTA  334

seq1  TAAATATTTCTCTACTGTGAAATCAGGGTAAGGTTTTATATTTCAGAATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTTCTCTACTGTGAAATCAGGGTAAGGTTTTATATTTCAGAATT  384

seq1  GTGAGAACTGGAGGGAATAATATGTATAAGAAAATTAGCATGCTGCCAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAACTGGAGGGAATAATATGTATAAGAAAATTAGCATGCTGCCAAG  434

seq1  AATATGGTAATTTTTCAAAATATGATAATTATATTAAAAATTTTCCATTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGTAATTTTTCAAAATATGATAATTATATTAAAAATTTTCCATTT  484

seq1  CTGTTTTTCCTGCTCTCTACACAATCTCTACCAGTACAAGCATTATACTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTTCCTGCTCTCTACACAATCTCTACCAGTACAAGCATTATACTT  534

seq1  TCCTCAAGGCCATTTCTTAGTTGAAACAGAACGTGATCACCCAGCCGGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAGGCCATTTCTTAGTTGAAACAGAACGTGATCACCCAGCCGGAA  584

seq1  ATGAATTTACTTTGTCTCTTAAAGTTTGGTTTTGAGCTAGAGCCTAACTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTTACTTTGTCTCTTAAAGTTTGGTTTTGAGCTAGAGCCTAACTA  634

seq1  CGTAGACCAGGTTAACCCTGACCTTGCTATCCTCTGCCTCAGTCTCCCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGACCAGGTTAACCCTGACCTTGCTATCCTCTGCCTCAGTCTCCCTA  684

seq1  GAACTAAGATTACAAGCAAGTATGTCTATGCCCAGTGCTTGAAGTCTTAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAGATTACAAGCAAGTATGTCTATGCCCAGTGCTTGAAGTCTTAA  734

seq1  AATTCTAGGTCATAAAATAATAGTGCTGGTGGGAAATTAATAAACCATCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAGGTCATAAAATAATAGTGCTGGTGGGAAATTAATAAACCATCT  784

seq1  AGCTCCACACTCCTTGTTTACAGAGGTGAAGCAAATGATTCCTAATGATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCACACTCCTTGTTTACAGAGGTGAAGCAAATGATTCCTAATGATT  834

seq1  GAAGCAAATTGGCCAAGTCCACACAGCTGGGTGGGATCCAAGCGCCGTCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAATTGGCCAAGTCCACACAGCTGGGTGGGATCCAAGCGCCGTCA  884

seq1  TCCTGTAGTAGCCACAGCCTTGTTTCAGTGTGAAGAAGGGATAATAGAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTAGTAGCCACAGCCTTGTTTCAGTGTGAAGAAGGGATAATAGAGA  934

seq1  AATAAATAAGATCTACGAGTGAGGGCCAACAAGACCTCTGGACTCAAATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAGATCTACGAGTGAGGGCCAACAAGACCTCTGGACTCAAATT  984

seq1  CTTAGAAGAAGGAGTCCAGAATCCAAGGCCCCCGGCTGGTGGATGAGCTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAGAAGGAGTCCAGAATCCAAGGCCCCCGGCTGGTGGATGAGCTC  1034

seq1  ACAGGGAGAAAATGGACAGTATATGTGCTTTGCTTGGTCCACACAGTAGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAGAAAATGGACAGTATATGTGCTTTGCTTGGTCCACACAGTAGT  1084

seq1  TTTGTGTTTGGTTTGAAAGAATTC  1122
      ||||||||||||||||||||||||
seq2  TTTGTGTTTGGTTTGAAAGAATTC  1108