BAC Information

Click to search

BAC

Clone NameB6Ng01-284J02
Chromosome9 (Build37)
Map Location 78,774,591 - 78,914,030
singlet/doubletdoublet
Overlap genenone
Upstream geneElovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456
Downstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218, LOC666490
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284J02.bB6Ng01-284J02.g
ACCGA083236GA083237
length1,1121,106
definitionB6Ng01-284J02.b B6Ng01-284J02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,774,591 - 78,775,712)(78,913,009 - 78,914,030)
sequence
gaattcaactctgaggtcttcatagtaagccagaaaagtgaaagatgatt
attataaacaatgtctacaggacagaaaccaactgaagacacatggaaga
acaagacaataagatgacttaggtgtcagaattaacagaaagatattttg
aagcgattgcatgtatttttatgggcagaaagaactatgtttcattatga
ttgaacatatgaataatctcaagagaaatggagaccaggaaaagggagaa
aataaaaatgtaaagatgggattttgttatctgatataacatatatgaaa
tagatattgcttaatttaagattatgaattgcaaaaggaggagtcagtga
acatgaccagcaatcaacagagcggggcagtcttttaaaatcaatctcac
aaaaaccttacagctttagtgagttgtagggaggcattgaagagtttacc
atttcaaagtgaatatagcctgtactgcaaaaggaaaaaaaataaatgaa
gaagaaaaagtatttgagaccgttatgattttttccctaaaatggtaaaa
aacacaaactggtaagttcaagaaactcagaaagttccaaggacaagtat
gtcttaagcacatacagtgattgatacatgtggccacaagtgcttgagag
gtgcggcaggaagatcactcttgtataagtttgagaccagcttgggtgac
agtgataccccatctcaaacatagaaaaaagacaggaaaacaaatacaaa
agcgaaaacaaaaacctatgggtatctcaggcaaactgctgaaataaaag
gtgtagaggatgcaatacaatacaatctcaagacaatttgagaaagttga
cttatgtgcggttaacaatgaggggtttagagttaattgtgatcagaagc
acgtcagaatagctgacagaaaggcagcgtgttcagaagcaaaccaaaga
cagaagcttgttaatgaggcattttgtatccagtgaaagtaccctgaaaa
gcgaaagtgaaaataatatacttccaatcaaaactaatctaacagattac
ctgcagactgcactgcaaataaggtgaggacatgttagctgaagaacaat
gcttgatgagac
gaattcacgcagttgaatccttctcaacagtctgttttacgggaacactt
cattaccatgacccgcagttctggttccggaatgagggatcttccttgca
ccggtgatggtaaccgtcccaggttttctcgtcccaggttttctcgtccc
gggatttctcgtcccaggtcttctcgtcccgtcccgggtctcagcaccaa
ctcttacacgcgttctcgcgaccggccaggaagaacacaacaaaccggaa
tcttctgtggcaaaagctttattgcttacatcttcaggagccagagagca
agagagcaagagagagaaagaaaaagaacaagaacaagaaagcaagagaa
agaatggcaaaaccccgtcccttttaaggagaattatcctccgcctagga
cgtattactccctgattggctgcagcccatcggcccagttgtcatcacgg
gaaaggcagaacacatggcgggaaaactgcccctgcacgtgtgcagatta
tttgtttaccacttagaacacagctgtcagcgccatcttataatggcaaa
tgtgagggcggctcccaacaaaggggaaaagtgatgcaattatattctaa
gtttttaaaaactctttaaaagaattataattgtaaaaatagacatcatc
aaatatcctaaatatatatctccagaatctgaacctttatagggaaaaat
tggatttctgttctttttaaaccttaagaagtaactatgactctcaaagt
ttaccaacacttacatgagaaattttaatagcttttttatgtgtatgtta
aattacatggtcaattttggagaaggtttcatgaggagctgagaagaaga
tatattctcttgttttaggtatgaaaaggttctgtagatatctgtcaagt
ctacatggtgctttggcagaagccatcctagtgggggtggacttcaggcc
accacccaactggacatactgtgtatctgggacacttctacatgcagcat
gctttgaccaggacttgagtagatggtccctaatgttgagtgagtctgcc
agactcattacctgttaaacctctctaaacagagacttcatggtctgcag
atactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_78774591_78775712
seq2: B6Ng01-284J02.b_46_1157

seq1  GAATTCAACTCTGAGGTCTTCATAGTAAGCCAGAAAAGTGAAAGATGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCTGAGGTCTTCATAGTAAGCCAGAAAAGTGAAAGATGATT  50

seq1  ATTATAAACAATGTCTACAGGACAGAAACCAACTGAAGACACATGGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAACAATGTCTACAGGACAGAAACCAACTGAAGACACATGGAAGA  100

seq1  ACAAGACAATAAGATGACTTAGGTGTCAGAATTAACAGAAAGATATTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACAATAAGATGACTTAGGTGTCAGAATTAACAGAAAGATATTTTG  150

seq1  AAGCGATTGCATGTATTTTTATGGGCAGAAAGAACTATGTTTCATTATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGATTGCATGTATTTTTATGGGCAGAAAGAACTATGTTTCATTATGA  200

seq1  TTGAACATATGAATAATCTCAAGAGAAATGGAGACCAGGAAAAGGGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACATATGAATAATCTCAAGAGAAATGGAGACCAGGAAAAGGGAGAA  250

seq1  AATAAAAATGTAAAGATGGGATTTTGTTATCTGATATAACATATATGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATGTAAAGATGGGATTTTGTTATCTGATATAACATATATGAAA  300

seq1  TAGATATTGCTTAATTTAAGATTATGAATTGCAAAAGGAGGAGTCAGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATTGCTTAATTTAAGATTATGAATTGCAAAAGGAGGAGTCAGTGA  350

seq1  ACATGACCAGCAATCAACAGAGCGGGGCAGTCTTTTAAAATCAATCTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACCAGCAATCAACAGAGCGGGGCAGTCTTTTAAAATCAATCTCAC  400

seq1  AAAAACCTTACAGCTTTAGTGAGTTGTAGGGAGGCATTGAAGAGTTTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCTTACAGCTTTAGTGAGTTGTAGGGAGGCATTGAAGAGTTTACC  450

seq1  ATTTCAAAGTGAATATAGCCTGTACTGCAAAAGGAAAAAAAATAAATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAAGTGAATATAGCCTGTACTGCAAAAGGAAAAAAAATAAATGAA  500

seq1  GAAGAAAAAGTATTTGAGACCGTTATGATTTTTTCCCTAAAATGGTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAAGTATTTGAGACCGTTATGATTTTTTCCCTAAAATGGTAAAA  550

seq1  AACACAAACTGGTAAGTTCAAGAAACTCAGAAAGTTCCAAGGACAAGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAACTGGTAAGTTCAAGAAACTCAGAAAGTTCCAAGGACAAGTAT  600

seq1  GTCTTAAGCACATACAGTGATTGATACATGTGGCCACAAGTGCTTGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAGCACATACAGTGATTGATACATGTGGCCACAAGTGCTTGAGAG  650

seq1  GTGCGGCAGGAAGATCACTCTTGTATAAGTTTGAGACCAGCTTGGGTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGGCAGGAAGATCACTCTTGTATAAGTTTGAGACCAGCTTGGGTGAC  700

seq1  AGTGATACCCCATCTCAAACATAGAAAAAAGACAGGAAAACAAATACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATACCCCATCTCAAACATAGAAAAAAGACAGGAAAACAAATACAAA  750

seq1  AGCGAAAACAAAAACCTATGGGTATCTCAGGCAAACTGCTGAAATAAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAAAACAAAAACCTATGGGTATCTCAGGCAAACTGCTGAAATAAAAG  800

seq1  GTGTAGAGGATGCAATACAATACAATCTCAAGACAATTTGAGAAAGTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGAGGATGCAATACAATACAATCTCAAGACAATTTGAGAAAGTTGA  850

seq1  CTTATGTGCGGTTAACAATGAGGGGTTTAGAGTTAATTGTGATCAGAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTGCGGTTAACAATGAGGGGTTTAGAGTTAATTGTGATCAGAAGC  900

seq1  ACGTCAGAATAGCTGACAGAAAGGCAGCGTGTTCAGAAGCAAACCAAAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCAGAATAGCTGACAGAAAGGCAGCGTGTTCAGAAGCAAACCAAAGA  950

seq1  CAGAAGCTTGTTAATGAGGCATTTTGTATCCAGTGAAAGTACCCTGAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCTTGTTAATGAGGCATTTTGTATCCAGTGAAAGTACCCTGAAAA  1000

seq1  GCGAAAGTGAAAATAATATACTTCCAATCAAAACTAATCTAACAGATTTA  1050
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCGAAAGTGAAAATAATATACTTCCAATCAAAACTAATCTAACAGA-TTA  1049

seq1  CCCTTGGCAGACCTGCACTGCAAATAAGGTTGAGGGACATGTTAGGCCTG  1100
      ||    ||||| ||||||||||||||||| ||| |||||||||||  |||
seq2  CC---TGCAGA-CTGCACTGCAAATAAGG-TGA-GGACATGTTAG--CTG  1091

seq1  AAGACAAATGCTGGATTGAGAC  1122
      ||||  |||||| || ||||||
seq2  AAGAACAATGCTTGA-TGAGAC  1112

seq1: chr9_78913009_78914030
seq2: B6Ng01-284J02.g_478_1173 (reverse)

seq1  AAGTATCTGCATCTGTCTCAGTCAGCTACTGGTAGAGCTTCTCATAGGAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGCCATGCGATGCTCCTGTCTGCAATCACAACATGGCATCAGTAATAGTG  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCAGGGTTTGGTATCCACCCATGGGATGGATCCCAAGTTGGGCTGGTTAC  150
                                                        
seq2  --------------------------------------------------  0

seq1  TGGACAGCCTTTCCTTCAGTCTCTGCTTTACATTCTTATGCACCAAAGCA  200
                                                        
seq2  --------------------------------------------------  0

seq1  GCATCAAGGCCGATAGAGCAACAAGGAGAAAAGATGACTGCGTGCCTGTT  250
                                                        
seq2  --------------------------------------------------  0

seq1  GCTGCATTGGCATACTGAGTCCACTTGAGACTGAGAAGGTGGTCTTAAAA  300
                                                        
seq2  --------------------------------------------------  0

seq1  AGAACGTAAGAAAATTCTCCTTCCATCCATTCCCCAAAGAAATTTCTGCA  350
                                             || | ||||||
seq2  ---------------------------------------AAGTATCTGCA  11

seq1  GACCCATGAGG--TCTGTTTAGAG----TTTACAGGTAATGAGTCT-GCA  393
      || |||||| |  |||||||||||    || ||||||||||||||| |||
seq2  GA-CCATGAAGTCTCTGTTTAGAGAGGTTTAACAGGTAATGAGTCTGGCA  60

seq1  GACTTCACTC-ACATTA-GGAACATCTACTCAAGTCCTGGTC-AAGCATG  440
      ||| |||||| |||||| ||| |||||||||||||||||||| |||||||
seq2  GAC-TCACTCAACATTAGGGACCATCTACTCAAGTCCTGGTCAAAGCATG  109

seq1  CTGCATGTAGAAGTGT-CCAGATACACAGTATGTCCAGTT-GGTGGT-GC  487
      |||||||||||||||| ||||||||||||||||||||||| |||||| ||
seq2  CTGCATGTAGAAGTGTCCCAGATACACAGTATGTCCAGTTGGGTGGTGGC  159

seq1  CTG-AGTCCA-CCCCACTAGGATGGCCTTCTGCCAAAGCACCATGTAGAC  535
      ||| |||||| |||||||||||||| ||||||||||||||||||||||||
seq2  CTGAAGTCCACCCCCACTAGGATGG-CTTCTGCCAAAGCACCATGTAGAC  208

seq1  TTGACAGATATCTACAGAACC-TTTCATACCTAAAACAAGAGAATATATC  584
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTGACAGATATCTACAGAACCTTTTCATACCTAAAACAAGAGAATATATC  258

seq1  TTCTTCTCAGCTCCTCATGAAACCTTCTCCAAAATTGACCATGTAATTTA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCAGCTCCTCATGAAACCTTCTCCAAAATTGACCATGTAATTTA  308

seq1  ACATACACATAAAAAAGCTATTAAAATTTCTCATGTAAGTGTTGGTAAAC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACATAAAAAAGCTATTAAAATTTCTCATGTAAGTGTTGGTAAAC  358

seq1  TTTGAGAGTCATAGTTACTTCTTAAGGTTTAAAAAGAACAGAAATCCAAT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAGTCATAGTTACTTCTTAAGGTTTAAAAAGAACAGAAATCCAAT  408

seq1  TTTTCCCTATAAAGGTTCAGATTCTGGAGATATATATTTAGGATATTTGA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTATAAAGGTTCAGATTCTGGAGATATATATTTAGGATATTTGA  458

seq1  TGATGTCTATTTTTACAATTATAATTCTTTTAAAGAGTTTTTAAAAACTT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCTATTTTTACAATTATAATTCTTTTAAAGAGTTTTTAAAAACTT  508

seq1  AGAATATAATTGCATCACTTTTCCCCTTTGTTGGGAGCCGCCCTCACATT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATAATTGCATCACTTTTCCCCTTTGTTGGGAGCCGCCCTCACATT  558

seq1  TGCCATTATAAGATGGCGCTGACAGCTGTGTTCTAAGTGGTAAACAAATA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTATAAGATGGCGCTGACAGCTGTGTTCTAAGTGGTAAACAAATA  608

seq1  ATCTGCACACGTGCAGGGGCAGTTTTCCCGCCATGTGTTCTGCCTTTCCC  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCACACGTGCAGGGGCAGTTTTCCCGCCATGTGTTCTGCCTTTCCC  658

seq1  GTGATGACAACTGGGCCGATGGGCTGCAGCCAATCAGG  1022
      ||||||||||||||||||||||||||||||||||||||
seq2  GTGATGACAACTGGGCCGATGGGCTGCAGCCAATCAGG  696