BAC Information

Click to search

BAC

Clone NameB6Ng01-284K20
Chromosome6 (Build37)9 (Build37)
Map Location 128,991,690 - 128,992,23658,179,966 - 58,180,420
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f
Downstream geneKlrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284K20.bB6Ng01-284K20.g
ACCGA083319GA083320
length984987
definitionB6Ng01-284K20.b B6Ng01-284K20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(128,991,690 - 128,992,236)(58,179,966 - 58,180,420)
sequence
gaattctctttcctacttccctacactactcctaccccttccaatctagt
aaacatgatgttattgtgtgttgctgtaaatctccaacccaaatgtgccc
ctgcagtaaaaacacaactcagttaatatgattacatgctgtgtgcctag
attgggcagatctaccgctataatattaccatcttctacatctatgagac
ccctcagaacttggggtttctccaggccatgtgcttctgctctgcttttc
ttcttcttcctcctcctctgtgtcctctacctcttccattttctccttct
tctctcccccacttctgctccaccttctctttatctgcccaatcatcagc
tctcctttattttataaattaaggtgggaagcaggtttataggaaatcac
ctgagtgctgactcattccttgttctcaactactcataggagaatggaat
taacatcaaatataattagccccagggatatccataacaattgtgcgctg
tttgaggatttaaatgctgatttctgtctcccccatatctgggtacagtc
cttattcagagaatctcctgtctcaatcttttgtaaacaccagctcccca
attgttccctgatgtgtcaagaaagagagcttaaacagccagtgattgag
gggagagagaatagagtggaacttcttgccagccaagggaaagagcagga
gagaaaggaagtaggggattagacacagagagaattcatgagagagcatt
agaaaaatatctgtagcagagaaagccataaaatgtaatatcttcagaat
tttggctggaggtagccagattagcatagagcagtaaaatagaataatat
ctgctcagttactgtgccctttaaagcttgataaataaaaaaactaatag
tccaatcctaacaattttgagaactagctgggtaagagaaaactgtaaca
tgctcattttaaaatgccactaacaaaccccccc
gaattcattgtttttaacagctttgaacctcttaccctttcttatcacag
gcctgcaacagttctgggaaacagagaaccctggggagatcaaaaaaacc
aaacagattttactgcgtaataaatatttatatccaatagtcacattcaa
ctatttgaaacactggagagttacccatttggcccattaaaaaactactt
tatttcttgagcggggcatatctatgccacagcatatgtgtaggagtctg
tcctctcctgctgccctgttctcctgtgatccaggccagatggtcaggat
tatgtggcaagagcttttaagccctgagtccatctcctttgaaaaaatac
aactgtaacttacttattaatttgtcttggttaaagttttgaaagaaagc
tgtcaactcttttttttattacatattttcctcaattatatttccaatgc
tagcccaaaagtcccccacaccctgccccccactttcctacccacccatt
cccatttttttggccctggcattcccctgtactggggcatataaagtttg
cgtgtccaatgggcctctctttccagtgatggccgaccaggccatctttt
gatacatatgcagctagagtcaagagctccggggtactggttagttcata
atgttgcacctacagggttgcagatctctttagctccttggatactttct
ctagctcctccattgggggccctgtgatccatccaatagctgactgagag
catccacttatgtgtttgctaggccccggcctagtctcacaagagacagc
tatatcaggttccttgcagcaaacgcttgctggtgtatgcaatgctgtca
ttgtttggaggctaattatgggatggatccctggatatggcagtctctag
atggtccatcccttttctctcagctccaaactttgtctctgtaatccttc
cattgatgattgtttccaattctaagaaggggccaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_128991690_128992236
seq2: B6Ng01-284K20.b_44_590

seq1  GAATTCTCTTTCCTACTTCCCTACACTACTCCTACCCCTTCCAATCTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTCCTACTTCCCTACACTACTCCTACCCCTTCCAATCTAGT  50

seq1  AAACATGATGTTATTGTGTGTTGCTGTAAATCTCCAACCCAAATGTGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGATGTTATTGTGTGTTGCTGTAAATCTCCAACCCAAATGTGCCC  100

seq1  CTGCAGTAAAAACACAACTCAGTTAATATGATTACATGCTGTGTGCCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTAAAAACACAACTCAGTTAATATGATTACATGCTGTGTGCCTAG  150

seq1  ATTGGGCAGATCTACCGCTATAATATTACCATCTTCTACATCTATGAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGCAGATCTACCGCTATAATATTACCATCTTCTACATCTATGAGAC  200

seq1  CCCTCAGAACTTGGGGTTTCTCCAGGCCATGTGCTTCTGCTCTGCTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGAACTTGGGGTTTCTCCAGGCCATGTGCTTCTGCTCTGCTTTTC  250

seq1  TTCTTCTTCCTCCTCCTCTGTGTCCTCTACCTCTTCCATTTTCTCCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCCTCCTCCTCTGTGTCCTCTACCTCTTCCATTTTCTCCTTCT  300

seq1  TCTCTCCCCCACTTCTGCTCCACCTTCTCTTTATCTGCCCAATCATCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCCCACTTCTGCTCCACCTTCTCTTTATCTGCCCAATCATCAGC  350

seq1  TCTCCTTTATTTTATAAATTAAGGTGGGAAGCAGGTTTATAGGAAATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTATTTTATAAATTAAGGTGGGAAGCAGGTTTATAGGAAATCAC  400

seq1  CTGAGTGCTGACTCATTCCTTGTTCTCAACTACTCATAGGAGAATGGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGCTGACTCATTCCTTGTTCTCAACTACTCATAGGAGAATGGAAT  450

seq1  TAACATCAAATATAATTAGCCCCAGGGATATCCATAACAATTGTGCGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCAAATATAATTAGCCCCAGGGATATCCATAACAATTGTGCGCTG  500

seq1  TTTGAGGATTTAAATGCTGATTTCTGTCTCCCCCATATCTGGGTACA  547
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGATTTAAATGCTGATTTCTGTCTCCCCCATATCTGGGTACA  547

seq1: chr9_58179966_58180420
seq2: B6Ng01-284K20.g_130_645

seq1  CTGGGAAACAGAGAACCCAGGGCAG----------CC-------------  27
      |||||||||||||||||| ||| ||          ||             
seq2  CTGGGAAACAGAGAACCCTGGGGAGATCAAAAAAACCAAACAGATTTTAC  50

seq1  -----------------TCTC------TCCCATTGAGCTTTGTG------  48
                       | ||      || |||| | || | ||      
seq2  TGCGTAATAAATATTTATATCCAATAGTCACATTCAACTATTTGAAACAC  100

seq1  ------GTTCCC-------CCCA--AACCTAGTCCTTTCCTCCTCAGTGA  83
            ||| ||       ||||  ||   | | ||||  | ||   |||
seq2  TGGAGAGTTACCCATTTGGCCCATTAAAAAACTACTTTATTTCT---TGA  147

seq1  ACTTGG----TCTCT-CCACA-TATAACTTGTGAAG----CTGGTCCCTC  123
       |  ||    ||| | |||||  |||   |||| ||    |||  | |||
seq2  GCGGGGCATATCTATGCCACAGCATA---TGTGTAGGAGTCTGTCCTCTC  194

seq1  CTCCTGCTTTCCAAGTCACCACTTCT-CTTACTTCCACAGTCTGCCCACT  172
      || ||||           ||  |||| ||    ||||      | |||  
seq2  CTGCTGC-----------CCTGTTCTCCTGTGATCCA------GGCCAGA  227

seq1  AGAAGACGTGAAGGAGGAGACCAACAACTTT----GGCTGGGTACTGGAG  218
       |   | |   | | ||    ||| | ||||      ||| || |   | 
seq2  TGGTCAGGATTATGTGG----CAAGAGCTTTTAAGCCCTGAGTCC---AT  270

seq1  GACCT-----AAAATCCTTCTTGGATATTTTTCTTTTTCTTTTTTTTTTT  263
        |||     ||||| |  ||    ||  || ||     | ||  ||| |
seq2  CTCCTTTGAAAAAATACAACT---GTAACTTACT-----TATTAATTTGT  312

seq1  TTTTTTTACATTTTTTTAAAAAA-------------TTTTTTATTAGGTA  300
       ||  ||| | ||||  || |||             ||||||||||  ||
seq2  CTTGGTTAAAGTTTTGAAAGAAAGCTGTCAACTCTTTTTTTTATTACATA  362

seq1  TTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCAC  350
      |||  |||| ||| |||||||||||||  |||||||||||||| ||||  
seq2  TTTTCCTCAATTATATTTCCAATGCTAGCCCAAAAGTCCCCCACACCCTG  412

seq1  CCACCCCCACTCCCCTACCCACCCACTCCC-CCTTTTTGGCCCTGGCGTT  399
      |  ||||||||  |||||||||||| ||||   |||||||||||||| ||
seq2  C--CCCCCACTTTCCTACCCACCCATTCCCATTTTTTTGGCCCTGGCATT  460

seq1  CCCCTGTACTGGGGCATATAAATTTTGCGTGTCCAATGGGCCTCTCTTTC  449
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTC  510

seq1  CAGTGA  455
      ||||||
seq2  CAGTGA  516